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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058613 ID=TCONS_00058613|Name=TCONS_00058613|organism=Clytia hemisphaerica|type=transcript|length=1675bp
NNTTTTAATATGCTTTATTTGGTTCATTAAATCTTCAATTAAATACTCCA
TTGGTGGATCAACTGCCTCTTTCAGCAAAAGTGCATGGGTTGCCTCACGG
TACGTCTTTGGTTGCTTCATTTGTAAGTAGTTCATGTATCCAGAATCTAG
TCCAGCAATTATGATATCAAGTTTTGTTTGGTCGGGAACATTAAGATTTT
GAGCAAGTTTCTCAAGTCTGCACAATTACGTGCTGATTGGCTCTTCATGC
TGGGAGATTTGGTGTAAGAGTTGGCGTTTTCGATACTTGATTTGTGGCAC
GTCGAATTCATCTGTAAGTGCTTGTTTCAAATTATGGTAGTTAGCACGGA
CGTCTGCGGCAAGGGTGCGATAAAATGTAAGTGCCCTGTCTTTTAATACT
CGAGTGAGGAGCTTAGCTTTTAGCTCGTCTGTGAGCTCGTAAAATTCAAT
TGTTATTTCATAGTTGACGAAAAATTCGGTTATATCATCCGCCGGGTCGA
GTCCAAATGTTGGTAATGACGATATTTCGATTTGTCTTGGAATTACAATT
TGTGCGACAGCAGCGGCTTCATCTTGGGCTACGGCCATTTCTGCTTGCTG
TTAAAAACGTTTTATGTCTCTGTACAATTGTCTGTAATTGTTGTCGTTTT
GCCTTTTTAGGATGAATTGACGCGGTCAGATATTCCGGATTTACTGACGG
TCTCCTTTCTGATTATGGACAAGCTTCTTTATCTCGGTGTGGTTCTTGAA
TGTTCAATTAAAATTGGGTTGTTCTCAGTGTTTTGTCTTTTCCACTTCTA
ATGATCTGTCATCAATATGTTGGTTCATTAATTGGTTTCagttataattt
ttcatttaattgtTCTACttctataagaaaaaaatttgaatttcatgCAT
CGTCTTTTGTTCATTGTCTTTTAGATATCGTCTATCGTGTAttcagtttt
tgttttattatttctttttaGCTATACGTTTTGCTCGAGTCTTCTTTGCT
TcttatttctttcaaattacCGCGTAATTTGCTCGTATACATGTATACCA
GTCAAATCCCTGATTTGACCCGTAGTAGCTGAGAAGTCTCTTCATAACAC
TTCTACGCCAGCTTCTACCCAGGAGTTTCTTCTGTAACTTTATAGTCCTA
CAAGTTCATTGTtcatatattttcaattaattatTTGTGTAATGTCTAAa
ttcattttcttctctttcattGCCATGGTCTTCCTTGTTGCGTTAATTTA
GTCGTTATCCTTCAAGGGATCAATTTGATATTGATCAATCGATCGTTTTT
TCTATTGTCAATTGGTTAAAGTTCTTTCAGACTTTATCATGAGGCGTTAC
GGTAAGATGACTTCGCGAATGTGTATCTTCTATCTAACCTCTTCTCTCAA
TAATGGTAAGATAATTGTTGCTGGTTCGGTGTTATCGATTGTCATCGAAT
TTATAAATaactctctttctctctctctttgAATATCGTAATCGGTGTAA
TAAATATAGCTTAATAAAATATCTCAATTCGGTAACGAATATCAATTCCT
CTGTCTCCAGACAGGAATACCATCGTAAATAAACCATATCTCATTCAATT
GTTTCCACGAACTTAAACAACCGAACAAAGGTAAAATATCCTTTCAACTC
TTACGTTGACATCTCCCTGTGCACA Run BLAST on NCBI protein sequence of TCONS_00058613-protein >TCONS_00058613-protein ID=TCONS_00058613-protein|Name=TCONS_00058613-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
MAVAQDEAAAVAQIVIPRQIEISSLPTFGLDPADDITEFFVNYEITIEFY
ELTDELKAKLLTRVLKDRALTFYRTLAADVRANYHNLKQALTDEFDVPQI
KYRKRQLLHQISQHEEPIST Run BLAST on NCBI transcript from alignment at scaffold_311:624390..626064 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058613 ID=TCONS_00058613|Name=TCONS_00058613|organism=Clytia hemisphaerica|type=transcript|length=1675bp|location=Sequence derived from alignment at scaffold_311:624390..626064 (Clytia hemisphaerica)
TGTGCACAGGGAGATGTCAACGTAAGAGTTGAAAGGATATTTTACCTTTG
TTCGGTTGTTTAAGTTCGTGGAAACAATTGAATGAGATATGGTTTATTTA
CGATGGTATTCCTGTCTGGAGACAGAGGAATTGATATTCGTTACCGAATT
GAGATATTTTATTAAGCTATATTTATTACACCGATTACGATATTcaaaga
gagagagaaagagagttATTTATAAATTCGATGACAATCGATAACACCGA
ACCAGCAACAATTATCTTACCATTATTGAGAGAAGAGGTTAGATAGAAGA
TACACATTCGCGAAGTCATCTTACCGTAACGCCTCATGATAAAGTCTGAA
AGAACTTTAACCAATTGACAATAGAAAAAACGATCGATTGATCAATATCA
AATTGATCCCTTGAAGGATAACGACTAAATTAACGCAACAAGGAAGACCA
TGGCaatgaaagagaagaaaatgaatTTAGACATTACACAAataattaat
tgaaaatatatgaACAATGAACTTGTAGGACTATAAAGTTACAGAAGAAA
CTCCTGGGTAGAAGCTGGCGTAGAAGTGTTATGAAGAGACTTCTCAGCTA
CTACGGGTCAAATCAGGGATTTGACTGGTATACATGTATACGAGCAAATT
ACGCGgtaatttgaaagaaataagAAGCAAAGAAGACTCGAGCAAAACGT
ATAGCtaaaaagaaataataaaacaaaaactgaaTACACGATAGACGATA
TCTAAAAGACAATGAACAAAAGACGATGcatgaaattcaaatttttttct
tatagaaGTAGAacaattaaatgaaaaattataactGAAACCAATTAATG
AACCAACATATTGATGACAGATCATTAGAAGTGGAAAAGACAAAACACTG
AGAACAACCCAATTTTAATTGAACATTCAAGAACCACACCGAGATAAAGA
AGCTTGTCCATAATCAGAAAGGAGACCGTCAGTAAATCCGGAATATCTGA
CCGCGTCAATTCATCCTAAAAAGGCAAAACGACAACAATTACAGACAATT
GTACAGAGACATAAAACGTTTTTAACAGCAAGCAGAAATGGCCGTAGCCC
AAGATGAAGCCGCTGCTGTCGCACAAATTGTAATTCCAAGACAAATCGAA
ATATCGTCATTACCAACATTTGGACTCGACCCGGCGGATGATATAACCGA
ATTTTTCGTCAACTATGAAATAACAATTGAATTTTACGAGCTCACAGACG
AGCTAAAAGCTAAGCTCCTCACTCGAGTATTAAAAGACAGGGCACTTACA
TTTTATCGCACCCTTGCCGCAGACGTCCGTGCTAACTACCATAATTTGAA
ACAAGCACTTACAGATGAATTCGACGTGCCACAAATCAAGTATCGAAAAC
GCCAACTCTTACACCAAATCTCCCAGCATGAAGAGCCAATCAGCACGTAA
TTGTGCAGACTTGAGAAACTTGCTCAAAATCTTAATGTTCCCGACCAAAC
AAAACTTGATATCATAATTGCTGGACTAGATTCTGGATACATGAACTACT
TACAAATGAAGCAACCAAAGACGTACCGTGAGGCAACCCATGCACTTTTG
CTGAAAGAGGCAGTTGATCCACCAATGGAGTATTTAATTGAAGATTTAAT
GAACCAAATAAAGCATATTAAAANN Coding sequence (CDS) from alignment at scaffold_311:624390..626064 >TCONS_00058613 ID=TCONS_00058613|Name=TCONS_00058613|organism=Clytia hemisphaerica|type=CDS|length=363bp|location=Sequence derived from alignment at scaffold_311:624390..626064 (Clytia hemisphaerica)
ATGGCCGTAGCCCAAGATGAAGCCGCTGCTGTCGCACAAATTGTAATTCC
AAGACAAATCGAAATATCGTCATTACCAACATTTGGACTCGACCCGGCGG
ATGATATAACCGAATTTTTCGTCAACTATGAAATAACAATTGAATTTTAC
GAGCTCACAGACGAGCTAAAAGCTAAGCTCCTCACTCGAGTATTAAAAGA
CAGGGCACTTACATTTTATCGCACCCTTGCCGCAGACGTCCGTGCTAACT
ACCATAATTTGAAACAAGCACTTACAGATGAATTCGACGTGCCACAAATC
AAGTATCGAAAACGCCAACTCTTACACCAAATCTCCCAGCATGAAGAGCC
AATCAGCACGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058613-exon-scaffold_311-1491911889:624390..626064 | TCONS_00058613-exon-scaffold_311-1491911889:624390..626064 | Clytia hemisphaerica | exon |
| TCONS_00058613-exon-scaffold_311-1510915933:624390..626064 | TCONS_00058613-exon-scaffold_311-1510915933:624390..626064 | Clytia hemisphaerica | exon |
| TCONS_00058613-exon-scaffold_311-1575043694:624390..626064 | TCONS_00058613-exon-scaffold_311-1575043694:624390..626064 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_311 | supercontig | scaffold_311:624390..626064 . |
Blast
The following BLAST results are available for this feature:
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