|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058702 ID=TCONS_00058702|Name=TCONS_00058702|organism=Clytia hemisphaerica|type=transcript|length=8090bpRun BLAST on NCBI protein sequence of TCONS_00058702-protein >TCONS_00058702-protein ID=TCONS_00058702-protein|Name=TCONS_00058702-protein|organism=Clytia hemisphaerica|type=polypeptide|length=2042bp MSSSIVVGSSLPPQVEGQLRCFLSIKVASLAWSIPQPPKDVQIQLHWWGDRun BLAST on NCBI transcript from alignment at scaffold_313:316409..340836+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058702 ID=TCONS_00058702|Name=TCONS_00058702|organism=Clytia hemisphaerica|type=transcript|length=24428bp|location=Sequence derived from alignment at scaffold_313:316409..340836+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_313:316409..340836+ >TCONS_00058702 ID=TCONS_00058702|Name=TCONS_00058702|organism=Clytia hemisphaerica|type=CDS|length=153225bp|location=Sequence derived from alignment at scaffold_313:316409..340836+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00058702 vs. Swiss-Prot (Human)
Match: C2CD3 (C2 domain-containing protein 3 OS=Homo sapiens GN=C2CD3 PE=1 SV=4) HSP 1 Score: 402.905 bits (1034), Expect = 9.640e-113 Identity = 344/1287 (26.73%), Postives = 579/1287 (44.99%), Query Frame = 3
Query: 1704 ITVETLTILGRVKSAKVTIRNLCLTNEDQPLGT-------------------VYFIEYKFPVATTDDQVSIAA--ETICNVSKSVDSRQSIVFERISIFPLTFNEEMVTYWWNETVCVKLYVKFNRNQKQILFAEGSWKLRDXXXXXXXXXXXXCDVLSVDGKREKLGILSVDIELLFDQ---NGGKSKVA-KTMKKPM------ESSIPIRMHKQVVKNSTNSINKQQQPTLKPGTIITTKAPKRITTQQPLDALIINGQPQYYQEKQPTDRQSKHQETLLLDSLLVITEGRGITSKD---LTPPHLYCVSRAFWNKEKGQTKICWNSSDPFFQYQQILAVQFDEDCMKKMKNNLMVIEVWSKSTTANKDKLIGMAKISLHQYYLSFQNGTFKEKLLNSQYPVVSIDGWISIHDVITSQPRGHLKVIHAIGSNDQIIRFLAMKGDQSCPRIHSSYPR---NEQHRHKVAM-EDTSSQKVEHDLEITIESVKNVFENSESRQEVWGESDCYVQYHFPTQHV------GQDY-----TYDCFKSKTTLCVPNIIFNHNNKHVFTLSNNEKINNIFQQCSNRKNAI--NEIEFELWKRHYYPNIREQLIGKSTLPIVKFYALMTMHVEESVSSQSFSLPLISLDASQQE-DTPSRGSLNLFVSYKKQACFTSPSSLTRNSNGEMVGLSISILRMCSLKGCVDAFL--RPGQK------ANPFVRFYISSMKDPTLRQTNHVINSSCPVFSHHVEFPIPIV-QNKGGLVTSLAEVLDNGYLVCEAYH------CDVVEK---GEVLLASGQIPLQGLLSKNNGIRQWFAL----SNTLKKRHHHLTLS----AGIEIQIQFSXXXXXXXXXXXARSVGWKPRNDVELNSEAWLSPQQTSRLTSSMKCRVNVVIDRIWLTNDVVEECFPCFKDLKRGN-----GLKIYARYKLYDQAPVITNSYHXXXXXXXXXXXXXXXXXFQFVVEPTTSFAWYLHEELLEVQFWMTSSRRK-ERSNKLDVNDKIVGSLFVSLEEFSHSPFEPHTISDVSPLFKSDSSCICNASARICILFNQDTESDWKTLHRGAQNTRNKHSDEEDTTLETSKDEESL---------------LNNICKTKVNEQNIQTPSMADLSANNKGVQVSVQIEEALHLP---TYLSGDEHCYPSTYVTCQLPD-NNQLMTLLASTTVKPKWNFRQELRLDFDKI--KGKLIKFTVWRCVGTMVDTVKDIQIGIAKIDTTSLFHGMKSINGWYNIHNFNNQCCGQLKVAIIP 5249
++V+ L +LGR S ++ I + + D P T +F+EY FPV ++ + A + ++ S + + F++ +FP+ F M+ +WWN + ++YVK +K + S LR +++S L + V +G+ G L V +EL+ D G +K++ T P+ ++P + ++N+ + T K + K + P + + P + T+ +K + LLL LL++ +G+ S + +P ++Y + F +E ++ I W ++ P F + Q++ V ++++KNN+MVIE W+K + +DKL+G+ K+ LHQ+Y+SF++ LL++QYPVV++D ++ + DV + G L+V A+GS++QI+ +K ++ S P ++ VAM ED + +EH EI IE VK + + + VWGE+DCYVQY+FP QH G ++ T F++ TTLCVP+ IFN + H L + + + + + ++FE+W R+YYPN+R+Q + K TLP+ + A++T E V Q+F+LPL +++E S G L++ + Y++ SP + V +S+ I+R C L+ A P + N V ++S + R+T+ V S CP FSHHVEF +V Q+ G LAE+L+ ++ YH D++ E LL ++P + LL K +GI W+ + L H L L G+E+ I F++ DR ++ A +GW N + + R+ V + R+WL P L G+ Y RYK YD T KES +++ + S + V S WY EE LE+Q W ER ++ D +GS +V L T+S V PLF ++S + A+ R+ ++ + S + H + HS+ E L DE L C + E + ADL VS+ +E A+HL + L+ + PS V+ D ++ + T + T P WNF+Q+ RL + + + + F VW ++ IG A +D + L G + + GWYNI +F+ +C GQ+KVA+ P
Sbjct: 527 LSVDRLALLGRTHSVRIIIETMGVP-PDSPQMTPGKKSYAGPPPKVTTAKKRTFFVEYHFPVGFSESGLGKTALITEVVRLASSKITDGKVKFQQRFVFPVQFGGPMIEHWWNSNLTFQIYVKKTPQKKPEVIGSVSLSLRAVIQSELLSFSDQLPVQQENGQ-SPFGPLKVTMELITDNKDFTGINTKLSGNTHYTPLCAPTSPNKALPELNQDMTCTKNPQNLNQIHEETAKKAQNLVLPNRKSPSPVAPHPSTFV-ATPASHNLVNQTNGTTK-ESALLLHVLLMVPDGKDFISGESEKQSPCNVYLNCKLFSTEEVTRSVIAWGTTQPVFNFSQVIPVSLSSKYLERLKNNVMVIETWNKVRSPGQDKLLGLVKLPLHQFYMSFKDAKISRLLLDAQYPVVAVDSYMPVIDVFSGHQNGSLRVFLAMGSSNQIMALQRLKNEEGTLPPFSPRPAHFLDQPTAASVAMAEDRGNGLMEHCFEIHIEMVKGL---APLQATVWGEADCYVQYYFPVQHSQSSVLKGPEFLENGITLKPFRTATTLCVPDPIFNSEHHHSLLLPAEVPVQRLLLSAFSAQGLVPGGGVQFEIWCRYYYPNVRDQKVAKGTLPLSRICAMVTTQHREDVGIQTFNLPLTPRIENRKELRNQSSGLLDVGLRYRR-----SPRTAEGVLAARTVSISVQIIRACGLQAAAKALAEREPALQFSATVGVNASVTTHLSFLPQGEQRRTHPVACSFCPEFSHHVEFTCNLVTQHCSGEACFLAELLEFAEVIFAVYHENTKSASDIISIESCKEYLLGVVKVPTKELLIKRSGITGWYPIILPEDGGLP---HGLELMQKIVGGLELSISFTHRGDRERVLEAAEHLGWSFENSL----------KDFVRMDEGEPATVTISTPRLWL---------PIHCVLLAGHNHIHKNTYCYLRYKFYDHEAFWTPLKKPKESVNKKQIMVTFKASKRAEVTRGPSLLWYFREERLEIQVWRAYGNDSVERPHQ---TDSWIGSAYVDLARLGERSARTLTVSGVYPLFGRNASNLSGAALRVHVVLS-SLSSHLEPTHELDSMDCSSHSESEQ--LPRRNDEVQLSPPEVISCHQKSPASTQVPCSSTTAEVRLTQEGPADLDGT---FAVSILVERAMHLSLKGSPLTERKVSIPSCCVSFATADESSPVYTQVVENTDSPIWNFQQQSRLSKELLLDPQQTLVFKVWH------KGDEERVIGFASVDLSPLLSGFQFVCGWYNITDFSGECQGQIKVAVSP 1764 HSP 2 Score: 118.627 bits (296), Expect = 4.141e-26 Identity = 60/173 (34.68%), Postives = 103/173 (59.54%), Query Frame = 3
Query: 60 SSIVVGSSLPPQVEGQLRCFLSIKVASLAWSIPQPPKDVQIQLHWWGDKAEGNLLRPQ--VDSDPNYAAVTEKVSEIHFPIRCGPRQFNSYVQDMGMLHMDVIYGHHKTKFAKLDIKDIGKLTTSKPVSGSYPIICTIAPFKSKQVGQLSVTVAFKTVSDTYNVTSSIVPTTD 572
S I +SLPP VEGQLRCFL + V + W I +PP V +++ WWG+ ++G L P+ + ++P T + + IRCGP+QF SY+ DM +L ++VI ++ I + +L+ + ++G + I+ + SK++G+L V++A + +S+TY+ + +PTTD
Sbjct: 21 SDISPSTSLPPLVEGQLRCFLKLTVNRVIWKIAKPPTCVLVRVRWWGETSDGTLFCPRDALQTEPKAVRTTTR-----YAIRCGPKQFTSYLTDMAVLVLEVITKLDGLPIGRVQINGLAQLSPTHQINGFFTIVSST----SKKLGELQVSLALEPLSETYD-SYHPLPTTD 183 The following BLAST results are available for this feature:
BLAST of TCONS_00058702 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.