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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058728 ID=TCONS_00058728|Name=TCONS_00058728|organism=Clytia hemisphaerica|type=transcript|length=2305bpRun BLAST on NCBI protein sequence of TCONS_00058728-protein >TCONS_00058728-protein ID=TCONS_00058728-protein|Name=TCONS_00058728-protein|organism=Clytia hemisphaerica|type=polypeptide|length=523bp MSSRADKAAKGQKDKHHAILRELVQEPTNKTCAECLAKGPRWSSWSLGVFRun BLAST on NCBI transcript from alignment at scaffold_313:550852..565548+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058728 ID=TCONS_00058728|Name=TCONS_00058728|organism=Clytia hemisphaerica|type=transcript|length=14697bp|location=Sequence derived from alignment at scaffold_313:550852..565548+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_313:550852..565548+ >TCONS_00058728 ID=TCONS_00058728|Name=TCONS_00058728|organism=Clytia hemisphaerica|type=CDS|length=14148bp|location=Sequence derived from alignment at scaffold_313:550852..565548+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00058728 vs. Swiss-Prot (Human)
Match: SMAP2 (Stromal membrane-associated protein 2 OS=Homo sapiens GN=SMAP2 PE=1 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 3.642e-45 Identity = 110/308 (35.71%), Postives = 154/308 (50.00%), Query Frame = 1
Query: 205 DKHHAILRELVQEPTNKTCAECLAKGPRWSSWSLGVFVCIRCAGIHRNLGVHISKMKSIDLDSWTPEQLQNVLRWGNKRAAEYYECYLPKDFTRPQATHALEAFIRNKYEKKLYIKKDGEPPENPQSKVDRLKNDSRXXXXXXXXXXSTASRQRRAEKKVDLSKPATTASSNNTILNMAKTEPKKSSPATANTLSAEQHQKSHSMNDLLSLDHPTPTANAEVKHSASSNDLLNFGGWS------------DPVPAASSANADPFXXXXXXXXXXXXXDLFANAPAQTTPEAPAKSAKESILSLYGSST 1092
D++ A+L L+ E NK CA+C +KGPRW+SW++GVF+CIRCAGIHRNLGVHIS++KS++LD WT EQ+Q + GN +A YE YLP+ F RPQ A+E FIR+KYEKK Y+ + + + K D+ K S EK + + + +KK D P K+ PK ++P DLL LD P + A K S + L+ +P A SA + P N +LF +++ + +K+SILSLYGS T
Sbjct: 10 DRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEMGNGKANRLYEAYLPETFRRPQIDPAVEGFIRDKYEKKKYMDRSLDINAFRKEKDDKWKRGSEPVPEKKLEPV-VFEKVKMPQKKEDPQLP-------------RKSSPKSTAPVM----------------DLLGLDAPVACSIANSKTSNTLEKDLDLLASVPSPSSSGSRKVVGSMPTAGSAGSVP-----------ENLNLFPEPGSKSEEIGKKQLSKDSILSLYGSQT 276 The following BLAST results are available for this feature:
BLAST of TCONS_00058728 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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