TCONS_00058797 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058797
Unique NameTCONS_00058797
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length589

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058797 ID=TCONS_00058797|Name=TCONS_00058797|organism=Clytia hemisphaerica|type=transcript|length=589bp
ATGTTTTGAGCAGAACACAGCTGACCATTCTGTCAAAGTTTTTAAAGTGC
TTCAGAAATTTGAATCAGGAGAAAATGAGGAATAATTTGCTTGAGATATC
GTTCAGCATATCATTCGTTAAACAAATCATTAGATAACgtattatttatt
aaaataaagaataaaataaaaaccaaaaatatatatataatgaAATGCAG
AATACCTTTTATTACTCATTCTTAAATCGAATTTATACCCTCAAGGAAGT
TGGACTTAAAACTTAAGGATAACATTCAATTAATTTGAGGAAAATATTGA
ACACGACTATCAATCTAATGGGATGCTCTACATAGTTCGCAAAGGGTGTG
TTGAATCAACACATTAGaatagtagaggccactatgtcttcccgtgtgca
gcagcttgtgcaaagggattttatgattgaatattgttccttgaatgtag
aagatcaaaatttgagaggtggggccgggtgtgactacccgttgccatgg
aaactgacgtcattggttactatggcaactaaaataaaaagtcgtcaaaa
ttgaaaaatttttgtttcattcgaaagagcatgaaaaat
Run BLAST on NCBI

transcript from alignment at scaffold_313:385445..386033

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058797 ID=TCONS_00058797|Name=TCONS_00058797|organism=Clytia hemisphaerica|type=transcript|length=589bp|location=Sequence derived from alignment at scaffold_313:385445..386033 (Clytia hemisphaerica)
atttttcatgctctttcgaatgaaacaaaaatttttcaattttgacgact ttttattttagttgccatagtaaccaatgacgtcagtttccatggcaacg ggtagtcacacccggccccacctctcaaattttgatcttctacattcaag gaacaatattcaatcataaaatccctttgcacaagctgctgcacacggga agacatagtggcctctactattCTAATGTGTTGATTCAACACACCCTTTG CGAACTATGTAGAGCATCCCATTAGATTGATAGTCGTGTTCAATATTTTC CTCAAATTAATTGAATGTTATCCTTAAGTTTTAAGTCCAACTTCCTTGAG GGTATAAATTCGATTTAAGAATGAGTAATAAAAGGTATTCTGCATTtcat tatatatatatttttggtttttattttattctttattttaataaataata cGTTATCTAATGATTTGTTTAACGAATGATATGCTGAACGATATCTCAAG CAAATTATTCCTCATTTTCTCCTGATTCAAATTTCTGAAGCACTTTAAAA ACTTTGACAGAATGGTCAGCTGTGTTCTGCTCAAAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037040XLOC_037040Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058797-exon-scaffold_313-1491911889:385445..386033TCONS_00058797-exon-scaffold_313-1491911889:385445..386033Clytia hemisphaericaexon
TCONS_00058797-exon-scaffold_313-1510915933:385445..386033TCONS_00058797-exon-scaffold_313-1510915933:385445..386033Clytia hemisphaericaexon
TCONS_00058797-exon-scaffold_313-1575043694:385445..386033TCONS_00058797-exon-scaffold_313-1575043694:385445..386033Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_313supercontigscaffold_313:385445..386033 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.75368 0.790767 0.90745 1.83539 5.38551 2.24187 3.14064 4.04573 1.45018 1.84712 2.33411 1.18421 3.88403 5.03068 1.628 1.77096 0.253724 0.656402 0 0 0.512828 1.19422 1.35674 1.05462 3.65161 3.61008 0.739558 1.19349 2.46857 3.04804
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058797 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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