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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058870 ID=TCONS_00058870|Name=TCONS_00058870|organism=Clytia hemisphaerica|type=transcript|length=1237bp
AGAAAACTACTTGAATAGAGATTATTTGCTGAAACTGCTCAAAAAAAGCT
AgagtaaaataacaaaaagtaaTAAGTAGCTAAGGGGGGAGAAAACCTGC
TGAATAACATGAAATATGATGgTTCCGCTTCAATTGAACCACTTCCAAAA
AAGGAACAACCTTCGGCCTTAATCATCGTCAACCACGAGGCTCTAGATCA
AGACACCctctacaacaacaacaataacagcAACCAGACCTTGCAACAGG
AACGTCCCATAACACCTGTTATTCGTGTGTGGGAAGGTGATTTCGAACTT
GTCGACCCGTGCAGTGGAAACAGCTTAGAAGCAGAATCGATCGTTGAAAA
TCAGGGCGTTGAAACTCAATCAGCACCTGATAAATCGTTCTCAGCTTGGC
AAGAAAAGGAAAACGGTATTAACGTATCACACAAATCAACTTCAATGTCG
AACCACGAAACTCTCGGATTGATGTCCAAAGATGCTGAGGACGAAGGAGA
TATAGAGCTTGATGAAATCGTCAGCTTTGATAGATCAACCGAAAGCAGTT
CTACCGTCTTAGAGAAAGAAGGACTACTGAAAGCTACACAAAAAGATGAT
GATCAGGCTAGTTTATCTAGCCTGGAAGAACACCAAACACCCTCGTTTGC
GTCCTCCAGGCTTCGGACTTCGGTTGATAGCGTCCAGGAGAATTACACTC
GTCAGCATAGCGAACCAGTGGTTATAGAAGCAAgtgattttgttgttgaa
aaCTTATCCACTGTTAAAGAAACAAATACGAACATAAACAGAGAGGATCG
GGTTTCATCGACAAGCAGTAGCAATGTCAGCAAAACTGAATATCAACATG
ATAATCACAAGAGTCAAACATTTGTTAACGAAAACATTGAAATGTCTGAA
CTAACAGTTGTCGAAGATAGAGAGGATTTGAGGAAAACATCTCTTGCTTC
ATCACATACTGATGAAGAAACACATCTATTTCAAACGTCAACTCCACATA
GAGataataCAGTGATGACGGACGTTGACGTGGTACAAGGTGTCCAAGAC
GTCTCTTACAACAACGACGACGACAATGTATCTGTAGCCTCCGAAACGTC
TGAAGGATCTGAATTTCTCGGTTCGTTGGGAATTTACATAGCTGAAGGGA
CTTGGGATTCCGACCTTCGCGTTGATTTGGATTTACAACTAGGCCGCGAT
GAATGGCAAACTCGATTTTCGAACATTGAAGGAGGTA Run BLAST on NCBI transcript from alignment at scaffold_314:151928..157048- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058870 ID=TCONS_00058870|Name=TCONS_00058870|organism=Clytia hemisphaerica|type=transcript|length=5121bp|location=Sequence derived from alignment at scaffold_314:151928..157048- (Clytia hemisphaerica)
AGAAAACTACTTGAATAGAGATTATTTGCTGAAACTGCTCAAAAAAAGCT
AGAGTAAAATAACAAAAAGTAATAAGTAGCTAAGGGGGGAGAAAACCTGC
TGAATAACATGAAATATGATGGTACGTAAATATTTAATCTCAAAGATTTT
TTTCTTGTCTTGCTTATCACACGCAAAATCATTTTGATTGTATATATGAT
AAAGAGCTCTTCAGGGGAGTCGTTTGCTACATTTCATGCGTGTATGTTTT
ATGTTTTTAAATGGGTTTGTCTGAACTGATCGATATGATGATTTCGCCTA
AAATTTTATCGCCCAAGTTTTTATTGAAAGGTAGGTGATGATTTTGTTGT
TTTTGGATTTTTTTCAAAACACTTTTGCCGAGCAAGCTTTTCTTTTTTGA
GTTTTACACAGGGCCCACGCCATTCAAGGGGGGAGTATCTCCCTCACTTT
TTTAAAAATAAATATATGTTTCCAACTTTCCACAAAATTGAAATTCATGC
GTTCTTTCAAAAGCTTAATTGCTGGGCAAAATCAGTCTGAAATAAGGTCA
TTAGATATATTAGGGTGACTGTCGAAATCGCAATGTTTTCCCAAATCATG
GCTGAGCCTTCTTAGTATATAGACTTTTTTTCTTGTTTTTACAATTTGCC
GAGACCATTTTATCTTTGATATTTTATATTCAAGTTTACGCTTTTTTTTT
GAACAACCCACATTTTCGGCTCAGGAATGGAGTTGTTAAGGATTTTCCGG
ATTTCAGCCAAAAAGTTGCTTATGGGTTTTGAGCCAAAAATGACTAGCAA
CTTCAAAGATTTTGGCTTTTTATCTCTTTTTATGTCCAAAATACCTCAAA
TTAGGTGTTCAAATACCATCTGTTCACAATCTAATGCCAAATAATGTCGA
AAATGTCTCTTTTTTTTAAGTATTTTTGGTTGCTTTCCCGGTTCATGCTC
AGTTTCAGGGCTAGGTTGCTAATGCTAAAAGTAGTGGCTTATGTTTTTAC
TATTGACTAACTCGGTTGGTTGCTTTTAAGAAGAATGTGTACTTTCAAGT
CCAAATTATTTGCTTCTTATTCACAGTCACTTTATTAGAAATATCTTCGT
TGAATATTCTCTAAAGATGAGGAAATAACCTGGGTTGCAATAAGGCATTG
AGACGATGAGTAGATTTAGCCAATTCTCAAAGAAAATGTATATGCCAATT
GTATAGAAAACGTTTTGTTGACTTACACAAATGTGTAGTTAAAACTGTCC
CCTAATTAGTAAACCAATATCCAGCCATTACAGATTATATGCTTCTTTAT
AAGAACATTTTAAGATTACGTTGAGGCTCTATTGTTCTCATTTTTTCTTG
TTAGGTTTACTGCATCATTTTATCACGTACGAAAATCTGAGATTTCCTAT
GTTACAAATAACTTTAAAAGAAATATTTTCTTCAACAGTTTTCGTTTCTA
TTAAACCAATTAAAAGCTCGTAGAATGCAGAGCTCTTTTTATAAATACCT
ACAAATCCCCTATAGAAAACTTCCCGGCTTAGCACGAGTCCATTCGACTG
ATCCTATAAAGCTAAGAGTCAATTTTATTATAAGAATCTGAGATTGGATG
AGATATAATTTCTACAATGTATAGCAATGTGTCCTCCCGTAATGCCTTTA
TGGCAACTCCTGAACTTGGGCACAGGATGTACGGTTACACATTTTGTGGA
TTGCATTGTGGAGTCACAAGAGTGCTCAAACTGCGAGCAGCGAGCAATAC
ATAATGCAAATAGTGAGCGTCTTAAATGAAGACTCTCCACCCAATCCAGG
AGTGCTCAAACTACAAAAGCAGTGAGCCAATATACAATGTATAGCAATGT
GCCCTCCCGGTTATTACCTAATTTCTAGATTGATTAGGTTTAGGAAGAAA
TGGAGGTTTCCAAGATTTTCACTTTTTTCAAATTTGGGATCATCTCGACC
TTTTTTAGTAGAATGCAGAAATTAATACATTGATGTTGTCTTTCGATGCA
ATGTAAAGCTGTTTCGATAGATGTACTTCAATAAACTGAACGCAAGTTGT
GTGCTTATTTTACCACATCTTTCTAAAGATTTATCTTTCAAAGCTTATAA
AACCCTTTTGTATGAAAATTGGTTTAAACGCTTGTCATCATTGCATACTG
TAGTGTACATATGACTCGTCATGGCATGTATTTGTCATTCTTATTTGCTC
TAATACGATTATTCTTATAAACTTTTCATCAAACTATCAAAATTTGTCAA
CGACATTCTCCCCTATCATATTTCTAATAGGTGGTAAAAACTTCCTACTC
TTTGAGCAGAAAGAGTTTCATTTCATGAGGGTTTTAAAAACGTATTTAAC
GATTATCGGCACCCCTGCATTCTTTGAATTTACTCTACTTTTTACATTTA
GTCGGCCAGTTTTGTATTTAATTAACATCATATCTTCTTGTAAAATTTCA
GGCAACATGCCATAAAAACCAATAATTTTTGGCTAAGCCTTGCCTGTTTT
GAAAACTTTAAAGATTTTTATCTAATGAACAAACTTTTGTCGGCTGATAT
TTTCGCGATTTCCACGAATGTCGTAAATTTCGCGATTTTTCCACCTCGCG
AAAGTTTTTGCTCGCAAAAGTTTGAACGCCTAAAGTAATTTCTGTAACCA
GAGGCCTAGATTGTTTTGGATTTTCTCCTTGATTTAGGCCAATGTTTGTT
TTTCTTAATTTTCTCATAAAAAGTGTTTATTACTTCCCTGTCAAGGGAAA
GTGACCCAAATTTTGAGACGGTTCAATCTTTTCGCGATAAAAATTGATCC
TGACTTTTCATCATCCGACAAAATATTTTCCCTATTAGAAAACGATTCCA
AATTTTTCCCGGTATATATCTAACGCGATTGTTTTTCTCTGATATTTCAT
GCTTATGCTCTTCATAATTCTGCTCTTTCGCAGTTGTTGGCCATTGAAAT
TCAGGAAAGAATTTCTCCATCTTTACACAAATCGCTAGTTTCAATTATCA
CATTCTTGATAAAATCGTCCCGTGCAAGTTTCATTTTCCTTGAAGATGAA
CTTTTTTTTTCATTTTTTGCAGGTTCCGCTTCAATTGAACCACTTCCAAA
AAAGGAACAACCTTCGGCCTTAATCATCGTCAACCACGAGGCTCTAGATC
AAGACACCCTCTACAACAACAACAATAACAGCAACCAGACCTTGCAACAG
GAACGTCCCATAACACCTGTTATTCGTGTGTGGGAAGGTGATTTCGAACT
TGTCGACCCGTGCAGTGGAAACAGCTTAGAAGCAGAATCGATCGTTGAAA
ATCAGGGCGTTGAAACTCAATCAGCACCTGATAAATCGTTCTCAGCTTGG
CAAGAAAAGGAAAACGGTATTAACGTATCACACAAATCAACTTCAATGTC
GAACCACGAAACTCTCGGATTGATGTCCAAAGATGCTGAGGACGAAGGAG
ATATAGAGCTTGATGAAATCGTCAGCTTTGATAGATCAACCGAAAGCAGT
TCTACCGTCTTAGAGAAAGAAGGACTACTGAAAGCTACACAAAAAGATGA
TGATCAGGCTAGTTTATCTAGCCTGGAAGAACACCAAACACCCTCGTTTG
CGTCCTCCAGGCTTCGGACTTCGGTTGATAGCGTCCAGGAGAATTACACT
CGTCAGCATAGCGAACCAGTGGTTATAGAAGCAAGTGATTTTGTTGTTGA
AAACTTATCCACTGTTAAAGAAACAAATACGAACATAAACAGAGAGGATC
GGGTTTCATCGACAAGCAGTAGCAATGTCAGCAAAACTGAATATCAACAT
GATAATCACAAGAGTCAAACATTTGTTAACGAAAACATTGAAATGTCTGA
ACTAACAGTTGTCGAAGATAGAGAGGATTTGAGGAAAACATCTCTTGCTT
CATCACATACTGATGAAGAAACACATCTATTTCAAACGTCAACTCCACAT
AGAGGTTTGTCTCTCCCTTTTGTTGATTTTTAAGATTTGCTTTCGAGAAC
TTTTAACCTTGCAAAGTACTACTTGCGATCCAGCTAGACGCTTTTATTAA
CATAGGATGGGATTCAAGGCTGGAAAAGTACAGATTTACTGTCGTATAGC
AATAAAGATCAAGCAGATTTACGGCCTCAGCTCTAACTAATACCCTGTCT
CGTCTATCCGGTGAAAAGCCGCGCTAAAGCTATAAGAAGACAAGCTTTTC
AATATCCCTATCAACAAGTGAACTCATGTTTGGCCTACTAGTAGAAAACC
TTCCCTTTTTGATTTAAGATGATATCTATATTTAAAAGCTTGTCAGTGGG
GTACAATATTTGTTTTGATTTCCACTTTTTTTCGTTATTATACATGAATC
CCTCTAAACGTCAAATTTTCATTTTGTTCTTCTCTCACCCTCGTTGATTT
ATAAAGTTGTTACTACTATGCATAGTACTGCAAAGAAAACTTTCAATAAG
ATCTCTTGACAGAATTTTTTTTTGACTTTTAGCAAAGTTACAAGTGATTT
GCTGTTCTTATAAAAATAGTTTTAAAACTAATGGCTTTTTAAATAAAGGT
ATAAAAATTGATAGGAATTTTGGCTTAGATTAAAAAGATAACTTTTCTCT
TTGAACATTCTCTGCGATGCTTTTCGACGATTGTGTGTGAGAGAGAGATT
AGATACCGACTTATATTTCCTTGTTTAGAGAGATGTGAAAGAGGATAGTA
CATTTGGAAATTCTTTCTAGGGAGTATAAAAGATTGGAGAAGATTCAAAG
CACGTTATTTTATGAGATGTTCCAAAAAAGTTGATACAAAAACACCCGAA
TGATTGGTATTCTAGACTACCAAGTGATCTTCAAAAAGTTTTATTTTCCC
AACTCAAAAAACAAAATTTCAAATCTTTTTTTTTTAGATAATACAGTGAT
GACGGACGTTGACGTGGTACAAGGTGTCCAAGACGTCTCTTACAACAACG
ACGACGACAATGTATCTGTAGCCTCCGAAACGTCTGAAGGATCTGAATTT
CTCGGTTCGTTGGGAATTTACATAGCTGAAGGGACTTGGGATTCCGACCT
TCGCGTTGATTTGGATTTACAACTAGGCCGCGATGAATGGCAAACTCGAT
TTTCGAACATTGAAGGAGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058870-exon-scaffold_314-1575043694:156928..157048 | TCONS_00058870-exon-scaffold_314-1575043694:156928..157048 | Clytia hemisphaerica | exon |
| TCONS_00058870-exon-scaffold_314-1575043694:153095..153976 | TCONS_00058870-exon-scaffold_314-1575043694:153095..153976 | Clytia hemisphaerica | exon |
| TCONS_00058870-exon-scaffold_314-1575043694:151928..152161 | TCONS_00058870-exon-scaffold_314-1575043694:151928..152161 | Clytia hemisphaerica | exon |
| TCONS_00058870-exon-scaffold_314-1510915933:156928..157048 | TCONS_00058870-exon-scaffold_314-1510915933:156928..157048 | Clytia hemisphaerica | exon |
| TCONS_00058870-exon-scaffold_314-1510915933:153095..153976 | TCONS_00058870-exon-scaffold_314-1510915933:153095..153976 | Clytia hemisphaerica | exon |
| TCONS_00058870-exon-scaffold_314-1510915933:151928..152161 | TCONS_00058870-exon-scaffold_314-1510915933:151928..152161 | Clytia hemisphaerica | exon |
| TCONS_00058870-exon-scaffold_314-1491911889:156928..157048 | TCONS_00058870-exon-scaffold_314-1491911889:156928..157048 | Clytia hemisphaerica | exon |
| TCONS_00058870-exon-scaffold_314-1491911889:153095..153976 | TCONS_00058870-exon-scaffold_314-1491911889:153095..153976 | Clytia hemisphaerica | exon |
| TCONS_00058870-exon-scaffold_314-1491911889:151928..152161 | TCONS_00058870-exon-scaffold_314-1491911889:151928..152161 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_314 | supercontig | scaffold_314:151928..157048 - |
Blast
The following BLAST results are available for this feature:
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