TCONS_00059017 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059017
Unique NameTCONS_00059017
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length436

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059017 ID=TCONS_00059017|Name=TCONS_00059017|organism=Clytia hemisphaerica|type=transcript|length=436bp
AACATAAAAAgagggggcgccaaaaacaaaaagcttctaaaaagggcgcc
aaattctgcttggccaccccagaaaaattttcccaccacgccactgcgGT
AATAATATAATTTACTGTGATTTGAGTAGATACCTTTCTTCCTCCATAAG
GTACTATAAAACGTTTCCATATTCTATTATTTACAAAGAATAACCCTAAA
ACATATCATCAATAAATAACAAATATATATTGCGTATACTAagaacctaa
aaatttatattcaacgtaaaaaaaatcttgattatTTTTCTGATTAAGCC
AGGCTACAAATAGAATAGGCAAAACCATTTTCAATAGTCAACATTTAAAA
AAGGTAACAgcgtgtttttaaaaacaacagTTGGCAATTTTTGATACAGG
AAAATTCCAGCTTTTCCAGAACCTACTCGAGGAAAG
Run BLAST on NCBI

transcript from alignment at scaffold_315:110284..110719

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059017 ID=TCONS_00059017|Name=TCONS_00059017|organism=Clytia hemisphaerica|type=transcript|length=436bp|location=Sequence derived from alignment at scaffold_315:110284..110719 (Clytia hemisphaerica)
CTTTCCTCGAGTAGGTTCTGGAAAAGCTGGAATTTTCCTGTATCAAAAAT
TGCCAActgttgtttttaaaaacacgcTGTTACCTTTTTTAAATGTTGAC
TATTGAAAATGGTTTTGCCTATTCTATTTGTAGCCTGGCTTAATCAGAAA
AataatcaagattttttttacgttgaatataaatttttaggttctTAGTA
TACGCAATATATATTTGTTATTTATTGATGATATGTTTTAGGGTTATTCT
TTGTAAATAATAGAATATGGAAACGTTTTATAGTACCTTATGGAGGAAGA
AAGGTATCTACTCAAATCACAGTAAATTATATTATTACcgcagtggcgtg
gtgggaaaatttttctggggtggccaagcagaatttggcgccctttttag
aagctttttgtttttggcgccccctcTTTTTATGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037168XLOC_037168Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059017-exon-scaffold_315-1491911889:110284..110719TCONS_00059017-exon-scaffold_315-1491911889:110284..110719Clytia hemisphaericaexon
TCONS_00059017-exon-scaffold_315-1510915933:110284..110719TCONS_00059017-exon-scaffold_315-1510915933:110284..110719Clytia hemisphaericaexon
TCONS_00059017-exon-scaffold_315-1575043694:110284..110719TCONS_00059017-exon-scaffold_315-1575043694:110284..110719Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_315supercontigscaffold_315:110284..110719 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.625158	0.304814	0.353918	0.346254	1.68612	0.73743	1.05356	0.752452	0.790214	1.14194	0.170882	0.936792	0.896372	0.215892	0.709971	0.285715	0.594924	0.976383	0.538359	0.929396	2.71997	2.4323	1.97118	2.11793	0	0.463768	2.88826	0.736568	2.2551	1.59064
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059017 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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