TCONS_00059101 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059101
Unique NameTCONS_00059101
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length511

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059101 ID=TCONS_00059101|Name=TCONS_00059101|organism=Clytia hemisphaerica|type=transcript|length=511bp
CTTTGGGTCAGGTGTGGCAAAGTATAGCCCTAACTCCTCATATAAAATAT
TTGAACTTTATACCTAATGCTACatgcaagcacttaagctaaagtcccgc
AATAGCAGGACAGAAAGACAGAATtagttttctaaaatttgcaaaaaaag
ccACAATAgtagatctttcaaattttgaaaatgttccaGAAATGAAATAG
GATAATTAATAACTAAATCCTGTCCACTGATGATCTGGAGCACTATTTTA
AGGTGCGCACTTGTCAGGATTTTTGGCACAGAACAAGGAAGTATTCATCA
AAATGAACgtcaatgcattagtacttacctttaaatcattcaaatctttt
catttttttaaaatcaatcagaaattatcagggaaacaaataaaaaaact
gCATCTAAATATctcttttctttccaaagatatcaTTTATGTTTTTTTCG
CCGTCTAGGTGAAAACACGACTTAGCACTGATTTACGGCACCAGAAAATT
CTTGACCCACA
Run BLAST on NCBI

transcript from alignment at scaffold_316:188284..188794

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059101 ID=TCONS_00059101|Name=TCONS_00059101|organism=Clytia hemisphaerica|type=transcript|length=511bp|location=Sequence derived from alignment at scaffold_316:188284..188794 (Clytia hemisphaerica)
TGTGGGTCAAGAATTTTCTGGTGCCGTAAATCAGTGCTAAGTCGTGTTTT
CACCTAGACGGCGAAAAAAACATAAAtgatatctttggaaagaaaagagA
TATTTAGATGcagtttttttatttgtttccctgataatttctgattgatt
ttaaaaaaatgaaaagatttgaatgatttaaaggtaagtactaatgcatt
gacGTTCATTTTGATGAATACTTCCTTGTTCTGTGCCAAAAATCCTGACA
AGTGCGCACCTTAAAATAGTGCTCCAGATCATCAGTGGACAGGATTTAGT
TATTAATTATCCTATTTCATTTCtggaacattttcaaaatttgaaagatc
tacTATTGTggctttttttgcaaattttagaaaactaATTCTGTCTTTCT
GTCCTGCTATTgcgggactttagcttaagtgcttgcatGTAGCATTAGGT
ATAAAGTTCAAATATTTTATATGAGGAGTTAGGGCTATACTTTGCCACAC
CTGACCCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037220XLOC_037220Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059101-exon-scaffold_316-1491911889:188284..188794TCONS_00059101-exon-scaffold_316-1491911889:188284..188794Clytia hemisphaericaexon
TCONS_00059101-exon-scaffold_316-1510915933:188284..188794TCONS_00059101-exon-scaffold_316-1510915933:188284..188794Clytia hemisphaericaexon
TCONS_00059101-exon-scaffold_316-1575043694:188284..188794TCONS_00059101-exon-scaffold_316-1575043694:188284..188794Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_316supercontigscaffold_316:188284..188794 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.64466	1.37469	0.266025	0.780791	0.158423	0.250376	0	0.141396	0.0989947	0.490484	0.119019	0.391192	0	0.162277	0.266827	0.357933	0	0.542344	0.12488	0	0	0.332409	0.538783	0	0.504515	0.450268	0	0	0	0.265692
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059101 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top