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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059186 ID=TCONS_00059186|Name=TCONS_00059186|organism=Clytia hemisphaerica|type=transcript|length=1813bpRun BLAST on NCBI transcript from alignment at scaffold_319:236694..250360- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00059186 ID=TCONS_00059186|Name=TCONS_00059186|organism=Clytia hemisphaerica|type=transcript|length=13667bp|location=Sequence derived from alignment at scaffold_319:236694..250360- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00059186 vs. Swiss-Prot (Human)
Match: TCTE1 (T-complex-associated testis-expressed protein 1 OS=Homo sapiens GN=TCTE1 PE=2 SV=1) HSP 1 Score: 316.62 bits (810), Expect = 8.367e-100 Identity = 167/354 (47.18%), Postives = 235/354 (66.38%), Query Frame = 3
Query: 141 MRRIIAEDPEWNLATVPNLADICLKHIVSNFGEKPLLNELIQQDRNHVLKNLPVNIPLSTTANLITDEDYWRRCCTARWKICDVSCYAQSWRRMFFEKNLQECIEKFVPGTTDPKQLEDLLLLSGKFIHCLKINNLLPPIKEPQKTGDDDFSDSESETG-EEVNMDHFDFTTAVPHLPNLEELHLCYGVRDCGMNFEWDLFEFTNRDCSMLAKAVKDCKKIKLFHLHKSKVNDEKARVLISHMLDHPSLTTLDLSYNKLSNSSARALGKLLNNRSILSHLALVDNNIGPQGAAAIAHALGXXXXXXXXXXXXXXXEDEGCQSILRVLLKNNTLEEIHLGSNNITHKSTPLLAQV 1199
MRRIIAEDPEW+LA VP L ++C++HI+ NF + P+L +++ + + VL +L ++PL+ TANLI E+YW RCC RW +C V+ + SW+RMFFE++L+ ++ F+PGTTDP + DLL L ++ + ++ LPP++ P + D SDS SE EE +DH+ V L +LEEL L Y V+DCGMNFEW+LF FT RDC LA A+K C +K+F L +SKV+D+KAR++I +LDHP L LDLS N + + AR KLL++ S L L L +N + GA ++AHAL NT L +LNLRLN +EDEG Q++ L N L +HLG N ++ + LL+QV
Sbjct: 61 MRRIIAEDPEWSLAIVPLLTELCIQHIIRNFQKNPILKQMLPEHQQKVLNHLSPDLPLAVTANLIDSENYWLRCCMHRWPVCHVAHHGGSWKRMFFERHLENLLKHFIPGTTDPAVILDLLPLCRNYVRRVHVDQFLPPVQLPAQLRPGDQSDSGSEGEMEEPTVDHYQLGDLVAGLSHLEELDLVYDVKDCGMNFEWNLFLFTYRDCLSLAAAIKACHTLKIFKLTRSKVDDDKARIIIRSLLDHPVLEELDLSQNLIGDRGARGAAKLLSH-SRLRVLNLANNQVRAPGAQSLAHALAHNTNLISLNLRLNCIEDEGGQALAHALQTNKCLTTLHLGGNELSEPTATLLSQV 413 HSP 2 Score: 92.0485 bits (227), Expect = 1.585e-19 Identity = 41/92 (44.57%), Postives = 61/92 (66.30%), Query Frame = 2
Query: 1217 NNTLEEIHLGSNNITHKSTPLLAQVLVYNKSVKNMNLSCNKFNEEGGKTIQEGMEDNGTIVQMDMRMTDIGQECEYSISQLLKKNREAIRRK 1492
N L +HLG N ++ + LL+QVL N ++ ++NLSCN +GGK + EGM DN T+++ D+R++D+ QE EY I Q L NREA R++
Sbjct: 389 NKCLTTLHLGGNELSEPTATLLSQVLAINTTLTSINLSCNHIGLDGGKQLLEGMSDNKTLLEFDLRLSDVAQESEYLIGQALYANREAARQR 480 The following BLAST results are available for this feature:
BLAST of TCONS_00059186 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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