TCONS_00059211 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059211
Unique NameTCONS_00059211
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length684

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059211 ID=TCONS_00059211|Name=TCONS_00059211|organism=Clytia hemisphaerica|type=transcript|length=684bp
taacaaTTTGATttcgatattttgaaaaattaagataCTGTACATTTCAA
CAAAATTatactaaaaaattaaaatgatagAAAGACTTCAAATTATAAAA
GCCACAGCCATCGAGGAAAAAAAGCCGAACGAACTTTAAAATCTCTGGAG
AAACAGACAGAAATAGTCTAGGTTATTTCTGTAGGAATCAgactttgata
aaaaatattttgcctgCAAGAATTAGCAAATTCAAAATTGACGAGTTGTG
ATCGTACCaaaatttttgacatattttttgtAGGTTTACCTTTTATAACG
CCCTATCAATAgggtacaaaaaatcagaactCAAAAAATTTCTACAAAGA
ACTATTTCCTGTGTCAGGCGGCGAAATTTCGAAAGTCATCACCGAAGCTA
CGACAAACATATCTTTGCCTTTGAAAGTCACcgtgaaaaaattatcattg
tTATTACCCGTCGTGCATTGCACCGCCGCGTGGATGCCATCATCAAACAA
AGCACCGATAAATACCTGAGCCACGATCTTATAATTGTCTTCCGTGATTT
GCACGATACGTGATTGGATAGATTCGCTGAGCGTGCGACACCATTGGTTC
ACATTCTCTGCGTGATATNggtgattttgggaccctttgagagacttttt
cctaaattttggtccattttttctaaattttggt
Run BLAST on NCBI

protein sequence of TCONS_00059211-protein

>TCONS_00059211-protein ID=TCONS_00059211-protein|Name=TCONS_00059211-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
PKFRKNGPKFRKKSLKGSQNHXYHAENVNQWCRTLSESIQSRIVQITEDN
YKIVAQVFIGALFDDGIHAAVQCTTGNNNDNFFTVTFKGKDMFVVASVMT
FEISPPDTGNSSL
Run BLAST on NCBI

transcript from alignment at scaffold_319:216871..217554

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059211 ID=TCONS_00059211|Name=TCONS_00059211|organism=Clytia hemisphaerica|type=transcript|length=684bp|location=Sequence derived from alignment at scaffold_319:216871..217554 (Clytia hemisphaerica)
accaaaatttagaaaaaatggaccaaaatttaggaaaaagtctctcaaag
ggtcccaaaatcaccNATATCACGCAGAGAATGTGAACCAATGGTGTCGC
ACGCTCAGCGAATCTATCCAATCACGTATCGTGCAAATCACGGAAGACAA
TTATAAGATCGTGGCTCAGGTATTTATCGGTGCTTTGTTTGATGATGGCA
TCCACGCGGCGGTGCAATGCACGACGGGTAATAacaatgataattttttc
acgGTGACTTTCAAAGGCAAAGATATGTTTGTCGTAGCTTCGGTGATGAC
TTTCGAAATTTCGCCGCCTGACACAGGAAATAGTTCTTTGTAGAAATTTT
TTGagttctgattttttgtacccTATTGATAGGGCGTTATAAAAGGTAAA
CCTacaaaaaatatgtcaaaaattttGGTACGATCACAACTCGTCAATTT
TGAATTTGCTAATTCTTGcaggcaaaatattttttatcaaagtcTGATTC
CTACAGAAATAACCTAGACTATTTCTGTCTGTTTCTCCAGAGATTTTAAA
GTTCGTTCGGCTTTTTTTCCTCGATGGCTGTGGCTTTTATAATTTGAAGT
CTTTctatcattttaattttttagtatAATTTTGTTGAAATGTACAGtat
cttaatttttcaaaatatcgaaATCAAAttgtta

Coding sequence (CDS) from alignment at scaffold_319:216871..217554

>TCONS_00059211 ID=TCONS_00059211|Name=TCONS_00059211|organism=Clytia hemisphaerica|type=CDS|length=342bp|location=Sequence derived from alignment at scaffold_319:216871..217554 (Clytia hemisphaerica)
ccaaaatttagaaaaaatggaccaaaatttaggaaaaagtctctcaaagg
gtcccaaaatcaccNATATCACGCAGAGAATGTGAACCAATGGTGTCGCA
CGCTCAGCGAATCTATCCAATCACGTATCGTGCAAATCACGGAAGACAAT
TATAAGATCGTGGCTCAGGTATTTATCGGTGCTTTGTTTGATGATGGCAT
CCACGCGGCGGTGCAATGCACGACGGGTAATAacaatgataattttttca
cgGTGACTTTCAAAGGCAAAGATATGTTTGTCGTAGCTTCGGTGATGACT
TTCGAAATTTCGCCGCCTGACACAGGAAATAGTTCTTTGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037288XLOC_037288Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059211-proteinTCONS_00059211-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059211-exon-scaffold_319-1491911889:216871..217554TCONS_00059211-exon-scaffold_319-1491911889:216871..217554Clytia hemisphaericaexon
TCONS_00059211-exon-scaffold_319-1510915933:216871..217554TCONS_00059211-exon-scaffold_319-1510915933:216871..217554Clytia hemisphaericaexon
TCONS_00059211-exon-scaffold_319-1575043694:216871..217554TCONS_00059211-exon-scaffold_319-1575043694:216871..217554Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_319supercontigscaffold_319:216871..217554 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.35264	2.05877	0.984464	1.60988	2.99782	2.47795	12.0425	14.5726	4.56645	3.51347	3.7327	4.6397	3.26318	3.63534	1.10836	1.42406	6.99974	2.7187	5.28713	7.57468	3.58628	3.33962	5.29994	3.98092	2.99387	3.89604	3.65786	4.44629	8.46029	9.21302
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005334Tctex
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059211 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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