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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059295 ID=TCONS_00059295|Name=TCONS_00059295|organism=Clytia hemisphaerica|type=transcript|length=1233bp
tcgaaattcaaaatggcggcataAGCTCTGATAAATCTCATGGAATCTTA
GTTCAAATCTCGAAATATCAACACCATCTCTCGTCATCCAACTTCAATCT
TGAAGAATCTCAACTATCAAACATTATTAAACACTTCTGTCGACAAATTT
TCAACATGACGAGACGAAGAACACCAAAAACTCCAAACTCAAATCTTAAC
TCTGGAACGACCAACATTGATGACTTGAATCTCGNGTCAACAAATTTTTC
AACATGACGAGACGAAGAACACCAAAAACTCCAAACActccaaaatcaac
aaaatcaaatcttaACTCTGGAACGACCAACATTGATGACTTGAATCTCG
AAACTCCAAGTACACCCACGACCACCCCATCACAACAATCTCCCTCCATG
TGTGATATACGTGGAAAGAAGAACCTCAATGAtcaatttcaaaatgaaga
tattgaCTTCTCAAAAGAAGAGCTCCTTGCAATAGTGAAATCTTTGAGAG
AAGAAGTCTCAACCCTAAAAGACAGGGTCAACATNCaatttcaaaatgaa
gatatctcaAAAGAAGAGCTCCTTGCAATAGTGAAATCTTTGAGAGAAGA
AGTCACAACCCTAAAAGACAGGGTCAACAGTCTCGAAGTCAATCTTATCA
AAGCTGACTCCCACATAGCAATTGTATCACGAACGTCGACCCTCTTGAAG
GAGGAACTTGATAGAGCAGAACAATACTCACGAAGAGCCTGTATAATTAT
GAGGGGTGTCCCTGCAAAGCCTGATGACACACCAACTGACCAAGAAAACA
AAGTGAAACAAATTCTAGAGGATCATGCTCCGGATGTTATACCTGCACTA
GACAAGACCCACCCGATTGGGCCAATCAGCAAAAACAATAAACAAAGTAT
GATATTACGCTTCAACAAACACTCTACTGTTAAAAGATTGTACAAAATAC
GCAAACAGATACCGAATGGCATCAAGCTCAGTCCCTCAATAACCTCGCAG
CGCTCAAGAATTTTGCAAAACATCAGATCAAAGATAGATGAAGAAGACTC
TCTATTCAACAAATGCGTAAAGTTTGTATTTGCAGACATTGAGGGCAACC
TCAAAGCATATCTATATGATAAATTACGTGGAAGAAATATCCACGACTTC
TCTGACGAAAACAGCCTAAATGAACTTATCTACGAACAAATTTTGTATTA
AACAAAGACGTTGAACATTATTCCATGAAAACT Run BLAST on NCBI protein sequence of TCONS_00059295-protein >TCONS_00059295-protein ID=TCONS_00059295-protein|Name=TCONS_00059295-protein|organism=Clytia hemisphaerica|type=polypeptide|length=315bp
MTRRRTPKTPNTPKSTKSNLNSGTTNIDDLNLETPSTPTTTPSQQSPSMC
DIRGKKNLNDQFQNEDIDFSKEELLAIVKSLREEVSTLKDRVNXQFQNED
ISKEELLAIVKSLREEVTTLKDRVNSLEVNLIKADSHIAIVSRTSTLLKE
ELDRAEQYSRRACIIMRGVPAKPDDTPTDQENKVKQILEDHAPDVIPALD
KTHPIGPISKNNKQSMILRFNKHSTVKRLYKIRKQIPNGIKLSPSITSQR
SRILQNIRSKIDEEDSLFNKCVKFVFADIEGNLKAYLYDKLRGRNIHDFS
DENSLNELIYEQILY Run BLAST on NCBI transcript from alignment at scaffold_324:86731..87963 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059295 ID=TCONS_00059295|Name=TCONS_00059295|organism=Clytia hemisphaerica|type=transcript|length=1233bp|location=Sequence derived from alignment at scaffold_324:86731..87963 (Clytia hemisphaerica)
AGTTTTCATGGAATAATGTTCAACGTCTTTGTTTAATACAAAATTTGTTC
GTAGATAAGTTCATTTAGGCTGTTTTCGTCAGAGAAGTCGTGGATATTTC
TTCCACGTAATTTATCATATAGATATGCTTTGAGGTTGCCCTCAATGTCT
GCAAATACAAACTTTACGCATTTGTTGAATAGAGAGTCTTCTTCATCTAT
CTTTGATCTGATGTTTTGCAAAATTCTTGAGCGCTGCGAGGTTATTGAGG
GACTGAGCTTGATGCCATTCGGTATCTGTTTGCGTATTTTGTACAATCTT
TTAACAGTAGAGTGTTTGTTGAAGCGTAATATCATACTTTGTTTATTGTT
TTTGCTGATTGGCCCAATCGGGTGGGTCTTGTCTAGTGCAGGTATAACAT
CCGGAGCATGATCCTCTAGAATTTGTTTCACTTTGTTTTCTTGGTCAGTT
GGTGTGTCATCAGGCTTTGCAGGGACACCCCTCATAATTATACAGGCTCT
TCGTGAGTATTGTTCTGCTCTATCAAGTTCCTCCTTCAAGAGGGTCGACG
TTCGTGATACAATTGCTATGTGGGAGTCAGCTTTGATAAGATTGACTTCG
AGACTGTTGACCCTGTCTTTTAGGGTTGTGACTTCTTCTCTCAAAGATTT
CACTATTGCAAGGAGCTCTTCTTTtgagatatcttcattttgaaattGNA
TGTTGACCCTGTCTTTTAGGGTTGAGACTTCTTCTCTCAAAGATTTCACT
ATTGCAAGGAGCTCTTCTTTTGAGAAGtcaatatcttcattttgaaattg
aTCATTGAGGTTCTTCTTTCCACGTATATCACACATGGAGGGAGATTGTT
GTGATGGGGTGGTCGTGGGTGTACTTGGAGTTTCGAGATTCAAGTCATCA
ATGTTGGTCGTTCCAGAGTtaagatttgattttgttgattttggagTGTT
TGGAGTTTTTGGTGTTCTTCGTCTCGTCATGTTGAAAAATTTGTTGACNC
GAGATTCAAGTCATCAATGTTGGTCGTTCCAGAGTTAAGATTTGAGTTTG
GAGTTTTTGGTGTTCTTCGTCTCGTCATGTTGAAAATTTGTCGACAGAAG
TGTTTAATAATGTTTGATAGTTGAGATTCTTCAAGATTGAAGTTGGATGA
CGAGAGATGGTGTTGATATTTCGAGATTTGAACTAAGATTCCATGAGATT
TATCAGAGCTtatgccgccattttgaatttcga Coding sequence (CDS) from alignment at scaffold_324:86731..87963 >TCONS_00059295 ID=TCONS_00059295|Name=TCONS_00059295|organism=Clytia hemisphaerica|type=CDS|length=948bp|location=Sequence derived from alignment at scaffold_324:86731..87963 (Clytia hemisphaerica)
TTAATACAAAATTTGTTCGTAGATAAGTTCATTTAGGCTGTTTTCGTCAG
AGAAGTCGTGGATATTTCTTCCACGTAATTTATCATATAGATATGCTTTG
AGGTTGCCCTCAATGTCTGCAAATACAAACTTTACGCATTTGTTGAATAG
AGAGTCTTCTTCATCTATCTTTGATCTGATGTTTTGCAAAATTCTTGAGC
GCTGCGAGGTTATTGAGGGACTGAGCTTGATGCCATTCGGTATCTGTTTG
CGTATTTTGTACAATCTTTTAACAGTAGAGTGTTTGTTGAAGCGTAATAT
CATACTTTGTTTATTGTTTTTGCTGATTGGCCCAATCGGGTGGGTCTTGT
CTAGTGCAGGTATAACATCCGGAGCATGATCCTCTAGAATTTGTTTCACT
TTGTTTTCTTGGTCAGTTGGTGTGTCATCAGGCTTTGCAGGGACACCCCT
CATAATTATACAGGCTCTTCGTGAGTATTGTTCTGCTCTATCAAGTTCCT
CCTTCAAGAGGGTCGACGTTCGTGATACAATTGCTATGTGGGAGTCAGCT
TTGATAAGATTGACTTCGAGACTGTTGACCCTGTCTTTTAGGGTTGTGAC
TTCTTCTCTCAAAGATTTCACTATTGCAAGGAGCTCTTCTTTtgagatat
cttcattttgaaattGNATGTTGACCCTGTCTTTTAGGGTTGAGACTTCT
TCTCTCAAAGATTTCACTATTGCAAGGAGCTCTTCTTTTGAGAAGtcaat
atcttcattttgaaattgaTCATTGAGGTTCTTCTTTCCACGTATATCAC
ACATGGAGGGAGATTGTTGTGATGGGGTGGTCGTGGGTGTACTTGGAGTT
TCGAGATTCAAGTCATCAATGTTGGTCGTTCCAGAGTtaagatttgattt
tgttgattttggagTGTTTGGAGTTTTTGGTGTTCTTCGTCTCGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059295-exon-scaffold_324-1491911889:86731..87963 | TCONS_00059295-exon-scaffold_324-1491911889:86731..87963 | Clytia hemisphaerica | exon |
| TCONS_00059295-exon-scaffold_324-1510915933:86731..87963 | TCONS_00059295-exon-scaffold_324-1510915933:86731..87963 | Clytia hemisphaerica | exon |
| TCONS_00059295-exon-scaffold_324-1575043694:86731..87963 | TCONS_00059295-exon-scaffold_324-1575043694:86731..87963 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_324 | supercontig | scaffold_324:86731..87963 . |
Blast
The following BLAST results are available for this feature:
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