TCONS_00059365 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059365
Unique NameTCONS_00059365
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length805

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059365 ID=TCONS_00059365|Name=TCONS_00059365|organism=Clytia hemisphaerica|type=transcript|length=805bp
aaaatgggaaGTCAATTCTCTAAAATCGTCGGCAAGAATAAAGAGTGGAC
AAAATGCATTTTTGCCCTCACTTTTCATGGGAGGAGGGCCTTGCTGCAGA
TCTTACACGATCCTGCCTATCAAGGTCTTCCTATTGATGAGAAAAAACTG
TATCAGTTTTTTCTTGCAAATAAAACAACACTGGACAAGTTGCTcaaaaa
gaacattttgaagAAAGACCAGTATGAACTTCTTTTACCTCTTGGGAAAC
AAGAAACATCGTCAAAACTTTTCGACATCACCCTTTTGGCattattgata
agaaattttgtaaatattccGAAACCTCAAGGAGGATGGGGAATCAAAGA
GCCCCAAGCTGGCGATATGTCTATTGCCGCTTTTGTCATTTTAATTCGTG
AACTGAGAAATGAGATATTGCATGGTACACCAGAGAACTTCCTTCGACCA
CATTATTTCCAGAACACTTGGACTAAGATTCGTGGTAGCTTAGTTGGTGT
CAAGTATAATGGAATCACTGACTTTGATAGCATATTAAACGACAAAGTTG
TATTTGATTTAAACGATGGAAAGATGTTCATCGAGGGTTTGGTTGAAGAC
TTGAAAGAGGATCTCAAAAACAAGATTGATCAAGAAAAGCAAGATATATT
ACTTAACATTTTGGATCAAGTGGACAAAAAgatcaaagaaaacaaagcaC
AAGAAGTGAAAGAGATTGTTGAACCGGACATCTTCAGGGTCGAGAAGATT
ACACCAAAAGAGGTTGCATTCACAACTGAAGAAGCTTCCATTATCTACAC
TGTTC
Run BLAST on NCBI

protein sequence of TCONS_00059365-protein

>TCONS_00059365-protein ID=TCONS_00059365-protein|Name=TCONS_00059365-protein|organism=Clytia hemisphaerica|type=polypeptide|length=268bp
KMGSQFSKIVGKNKEWTKCIFALTFHGRRALLQILHDPAYQGLPIDEKKL
YQFFLANKTTLDKLLKKNILKKDQYELLLPLGKQETSSKLFDITLLALLI
RNFVNIPKPQGGWGIKEPQAGDMSIAAFVILIRELRNEILHGTPENFLRP
HYFQNTWTKIRGSLVGVKYNGITDFDSILNDKVVFDLNDGKMFIEGLVED
LKEDLKNKIDQEKQDILLNILDQVDKKIKENKAQEVKEIVEPDIFRVEKI
TPKEVAFTTEEASIIYTV
Run BLAST on NCBI

transcript from alignment at scaffold_326:494440..497439-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059365 ID=TCONS_00059365|Name=TCONS_00059365|organism=Clytia hemisphaerica|type=transcript|length=3000bp|location=Sequence derived from alignment at scaffold_326:494440..497439- (Clytia hemisphaerica)
AAAATGGGAAGTCAATTCTCTAAAATCGTCGGCAAGAATAAAGAGTGGAC
AAAATGCATTTTTGCCCTCACTTTTCATGGGAGGAGGGCCTTGCTGCAGA
TCTTACACGATCCTGCCTATCAAGGTCTTCCTATTGATGAGAAAAAACTG
TATCAGTTTTTTCTTGCAAATAAAACAACACTGGACAAGTTGCTCAAAAA
GAACATTTTGAAGAAAGACCAGTATGAACTTCTTTTACCTCTTGGGAAAC
AAGAAACATCGTCAAAACTTTTCGACATCACCCTTTTGGCATTATTGATA
AGAAATTTTGTAAATATTCCGAAACCTCAAGGAGGATGGGGAATCAAAGA
GCCCCAAGCTGGCGATATGTCTATTGCCGCTTTTGTCATTTTAATTCGTG
AACTGAGAAATGAGATATTGCATGGTACACCAGAGAACTTCCTTCGACCA
CATTATTTCCAGAACACTTGGACTAAGATTCGTGGTAGCTTAGTTGGTGT
CAAGTATAATGGAATCACTGACTTTGATAGCATATTAAACGACAAAGTTG
TATTTGATTTAAACGATGGAAAGATGTTCATCGAGGGTTTGGTTGAAGAC
TTGAAAGAGGATCTCAAAAACAAGATTGATCAAGAAAAGCAAGATATATT
ACTTAACATTTTGGATCAAGTGGACAAAAAGATCAAAGAAAACAAAGCAC
AAGAAGTGAAAGAGATTGTTGAACCGGACATCTTCAGGTAAGTGGATTTT
CAAATCTATTCCTCTTGACTACCGTGAGAATCGTATTTTTGTCTTTTCTT
TGCTAGGGTAACCTTTAACTCCGCTTTGACAGTTTGATCTGTATTTGCAG
ATTGAACATAAAAGTTAGAATACTAAAGATTTTAAAAGGCACCCTCCACA
GCCAGGACTAATAAACGACTCTGTAACGTAAAGAGGCCAGTGTCATATAT
TGTAGGAATGACCGTTTCTAGGTATCTTTCCAAATGCTATAGTCAGTTTG
ATAATTCATCGGAAATACTCCGAAATCTTTCAATCTCTTTTGTTAATTTT
TTTGTCACAAAGAAATGGAAGTGGGAGAAAGATTTCCTAACCTTTAAAAT
TACTCAAACTAGTCAAAAATATCAGATTATTTGCAACCTGTTCAATAAAG
CAGAAAAATCAGTACAGTACTGTGCAAAGAGTTGAAATCCTCCAATTTTC
AAATATTCTAAAGTTCCTTATTACGCGATCACGAATGGTGGCGGTCTTGG
TTGACCCTGCTGACAAGAAGTATATATGCCGGGTTGTTATTTTATTTTTT
CATTATATGGTCCCTTGGGACATGGAACCAGTTTTTGTCAAGTTGGTAAA
CTAAAGCTTTGAAGGGGTAACAGCGGATACCCCTTAAAACCAACAACAAA
AAAGTACCCCCTATATCTTGATAGGGAAATCAGTATAAAGGCTGAAACTT
TTTCTTCAATATTCAAGGAGCTAGAGTGAGTTATATGCAATTTTTATCTA
ATTTTGGTGTTAAAATATTTCCTTCAGACGCAAATATGTTATTTTGAATC
TGTCTCAAACCATCAAAAGCATGCTCATTTTTAAGTATAACCATAGTATA
AGAAAGCCGCGGCTTTCTTATACTATGTTATAACCATCATTCTTAACCAT
CATTCTTTCAAAATAAACAAAAATCGTTTAATTCTGATAAATGTAAAAGT
CAGAATCCTCATTTTAATGACGACCTCCGTTTTGGGGGCCGTCTCTGTAC
TGATTGTCCGTTTTTGAAAAATTGGATTATAGGGGGAAATTTTCCAACTT
TGAGCCCTCCCGCATTTTGATGAGGCGAAGTTGACAGCTACGTGTTAGTT
GATAATTTTCGAATCTGAGTTTAATCATGAACATATAAACGACTGGACAC
CTATCTTCTATTGTGCCTTTGAAGCGAGCTTCGTTGCCGCCTGTATTTCA
AATTTGGTTTAAAAAATCCAACAATATTCCGTCCGTGGCAACTTTATTTC
TGTGAATTACTTAGGTAAAAGGATTGAAACATACTCGTAATTCACAAAAG
TAATTCATAAGTTTGCAATATATTTTATTAACATTTTTCAACGCTGAAAT
GCAGAATTTCAAATGTGTGTATACTTTTGAATCACTTTTGTCACTCGAAT
AATTTTTTTTATGACTAGAAAAAAATAGTATGCCAAAGTTCAGAGCCTGT
GTTATAAGAATATCCTTATGTGAATCCCATACTCTCTAAAATTATTCCAT
ACTTTTGAGTCGAAATTTAGAAATAATAGCCGGAGTTTTAACAAGCCGAC
GATGATTTTGCCTCTGTTATCTTTGTTATGATATAAATAAAAGACTCGAA
AAGAGTAGAACAACAGGGACTTTTGTCGAAGTTATGACATTGTTAGCAAG
GTATTCCCAAGAGATAAACCATCAAAATTTATTGTTTCATTTTATGATTT
TAACGAGGCGGCAACGAAGCTAGCAGTGTCATCTTCAAAAATACAAAGGA
GATGGATGTCCAGTTGTTTATATGTTCATGGTTTAATTGATGCTTATACG
TAATTGATNAGATGACATGATTTCAAGTTAGGAAAGGAGATTCCTCGAGA
TCGCCAATCGATGATGACAAAAGAAAAGTGATTATAATTGAATTCCCATA
TCAACAAAGTAATACTTAAATCTTAAACTTAAACTTTCAGGTCTGAACAC
GACCTAAAGGTTTAACAACTAAACGTGAGATTTGGTTAAGTTTTAAGTAA
GTTAATGCTCGTAAAAACCGCCATTAGCTTCTGGGGCTTAGTTCTTTATG
TTTTTGTTTACATCGCATATATTATTCTTTCGTGAATAACAAAGGATCAA
AGAAAATTTGTGACAGTACTTTCCAGAGCGATTGTATCAATCTTATGAAA
ATAGCTTGCAATTTTTTCCTCATCTTTTGAAGGGTCGAGAAGATTACACC
AAAAGAGGTTGCATTCACAACTGAAGAAGCTTCCATTATCTACACTGTTC

Coding sequence (CDS) from alignment at scaffold_326:494440..497439-

>TCONS_00059365 ID=TCONS_00059365|Name=TCONS_00059365|organism=Clytia hemisphaerica|type=CDS|length=1608bp|location=Sequence derived from alignment at scaffold_326:494440..497439- (Clytia hemisphaerica)
GGTCGAGAAGATTACACCAAAAGAGGTTGCATTCACAACTGAAGAAGCTT
CCATTATCTACACTGTTAAAATGGGAAGTCAATTCTCTAAAATCGTCGGC
AAGAATAAAGAGTGGACAAAATGCATTTTTGCCCTCACTTTTCATGGGAG
GAGGGCCTTGCTGCAGATCTTACACGATCCTGCCTATCAAGGTCTTCCTA
TTGATGAGAAAAAACTGTATCAGTTTTTTCTTGCAAATAAAACAACACTG
GACAAGTTGCTCAAAAAGAACATTTTGAAGAAAGACCAGTATGAACTTCT
TTTACCTCTTGGGAAACAAGAAACATCGTCAAAACTTTTCGACATCACCC
TTTTGGCATTATTGATAAGAAATTTTGTAAATATTCCGAAACCTCAAGGA
GGATGGGGAATCAAAGAGCCCCAAGCTGGCGATATGTCTATTGCCGCTTT
TGTCATTTTAATTCGTGAACTGAGAAATGAGATATTGCATGGTACACCAG
AGAACTTCCTTCGACCACATTATTTCCAGAACACTTGGACTAAGATTCGT
GGTAGCTTAGTTGGTGTCAAGTATAATGGAATCACTGACTTTGATAGCAT
ATTAAACGACAAAGTTGTATTTGATTTAAACGATGGAAAGATGTTCATCG
AGGGTTTGGTTGAAGACTTGAAAGAGGATCTCAAAAACAAGATTGATCAA
GAAAAGCAAGATATATTACTTAACATTTTGGATCAAGTGGACAAAAAGAT
CAAAGAAAACAAAGCACAAGAAGTGAAAGAGATTGTTGAACCGGACATCT
TCAGGGTCGAGAAGATTACACCAAAAGAGGTTGCATTCACAACTGAAGAA
GCTTCCATTATCTACACTGTTAAAATGGGAAGTCAATTCTCTAAAATCGT
CGGCAAGAATAAAGAGTGGACAAAATGCATTTTTGCCCTCACTTTTCATG
GGAGGAGGGCCTTGCTGCAGATCTTACACGATCCTGCCTATCAAGGTCTT
CCTATTGATGAGAAAAAACTGTATCAGTTTTTTCTTGCAAATAAAACAAC
ACTGGACAAGTTGCTCAAAAAGAACATTTTGAAGAAAGACCAGTATGAAC
TTCTTTTACCTCTTGGGAAACAAGAAACATCGTCAAAACTTTTCGACATC
ACCCTTTTGGCATTATTGATAAGAAATTTTGTAAATATTCCGAAACCTCA
AGGAGGATGGGGAATCAAAGAGCCCCAAGCTGGCGATATGTCTATTGCCG
CTTTTGTCATTTTAATTCGTGAACTGAGAAATGAGATATTGCATGGTACA
CCAGAGAACTTCCTTCGACCACATTATTTCCAGAACACTTGGACTAAGAT
TCGTGGTAGCTTAGTTGGTGTCAAGTATAATGGAATCACTGACTTTGATA
GCATATTAAACGACAAAGTTGTATTTGATTTAAACGATGGAAAGATGTTC
ATCGAGGGTTTGGTTGAAGACTTGAAAGAGGATCTCAAAAACAAGATTGA
TCAAGAAAAGCAAGATATATTACTTAACATTTTGGATCAAGTGGACAAAA
AGATCAAAGAAAACAAAGCACAAGAAGTGAAAGAGATTGTTGAACCGGAC
ATCTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037371XLOC_037371Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059365-proteinTCONS_00059365-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059365-exon-scaffold_326-1575043694:496703..497439TCONS_00059365-exon-scaffold_326-1575043694:496703..497439Clytia hemisphaericaexon
TCONS_00059365-exon-scaffold_326-1575043694:494440..494507TCONS_00059365-exon-scaffold_326-1575043694:494440..494507Clytia hemisphaericaexon
TCONS_00059365-exon-scaffold_326-1510915933:496703..497439TCONS_00059365-exon-scaffold_326-1510915933:496703..497439Clytia hemisphaericaexon
TCONS_00059365-exon-scaffold_326-1510915933:494440..494507TCONS_00059365-exon-scaffold_326-1510915933:494440..494507Clytia hemisphaericaexon
TCONS_00059365-exon-scaffold_326-1491911889:496703..497439TCONS_00059365-exon-scaffold_326-1491911889:496703..497439Clytia hemisphaericaexon
TCONS_00059365-exon-scaffold_326-1491911889:494440..494507TCONS_00059365-exon-scaffold_326-1491911889:494440..494507Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_326supercontigscaffold_326:494440..497439 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.119053	0.0580476	0	0	0	0.240034	0.249696	0.421144	0.282764	0.594645	0.67721	0.125316	3.48401	2.44208	0.296065	0.491708	0.161752	0.601352	2.32738	2.70923	0.895475	1.00423	0.31983	0.72955	1.48647	1.47702	3.4766	6.04369	1.69024	0.703825
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059365 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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