TCONS_00059566 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059566
Unique NameTCONS_00059566
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3183

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059566 ID=TCONS_00059566|Name=TCONS_00059566|organism=Clytia hemisphaerica|type=transcript|length=3183bp
TAATATCGGTTTAGAATTCCGTCATAAAATGGTGCATCGCTTGAAAGATT
TACGGGAAGCTTACACAGTTGAAGAACTTCAAGCTAATGGCTCAGAAAAG
TTTAATTCAACCAGATTGGAAAGTATTCTATTTTTCAATGGATTGGTTGA
ACATTTCTGCTAAGAAAATAAAATCGAGATGAAACTACATATTCCAAACA
AATACAAGTCATTGTATGAATGGATGTGTTTTACTTCGccttcctttgaa
aatgaacTATTAGATGAAGTTGATTCAAAGATCTTCCCAAGGAGTTCACT
TCCCTTAGAGAAGATGAAGAAATACCATGGTCTTGAGATGAAAGGTACCA
TTCCATTGAAATATATTGCATTGGTGAAGTGCAATTAGAAGAGCATAAAT
CGTTGGATAGACATTTATCACAGTTACCGAAAACGTTTGGTCGCACTGCC
ATGAGAataaacaacaacaacaaaagaattACGTAAACAAAAGACCAATT
GTGTTCAAAGAATCAAGTTCAAATGGATATCAATTTATTACCAGATGAGA
TACTAGAAATAATCATTGCGTTCTCGGAAAAGGAAGATGCAAAAGCTTTA
TCACGAACATCAAAAAGAATGTATAATCTTACTATTGAACGAATTTGGTC
AAAACCAAGATTTTATGGGAAACGAGATCATTCTTTCTTGACAAAAATAA
CGAAATTTCCGATTAAAGAGTTGCATACAAACGATTTTAATTGTCTTTGG
TCCAAAATTTGTGATATCGTTTCTGGACTTGACTTATTACATATTGATTA
TAACGACAATGATGAAACCTTTGAAGACAGATTAGACGATATTTGTGAAA
TTGCAAAACCACCAATTGTTCTGCACACAAATGCCCTTAATATGAAATAC
AGAGACgactttgatttgtttttgaacGGAATTCTCGGCGGTGCTTGTTC
GATACGAAAGTTGATAATCAATCCCAAGTTTAGTAGCGATGAAAGAAGAA
ACTGTGCTTGGTCACCTAAACAACTTGAAATGGTCagtgaaaaagttttc
attgaGGAAATTTTGTCGAGTTCTTTATCGATCACTGATTTTGATGAGCT
TGTTAAAGTTTTGTGTAAACTTAAAGGAACACGTGTCAATATTTCTGAAA
CGTTCAATAACCAATATATTTTAACTGTTGAAGATTTGGATAAACTTGCA
TCGAATAACATAAAAGTTTTCAAGATTGATTGTGTTGCCCTTGAATATGG
TTTGTCGAGTGATGGCCTTACAAAGTTTGCTCCtgtactttcaaaatttc
aatctttGGAAGAGTTTAGCATTCGTCATGCTTACTGCCAAGATCCAATA
CCTATTCAGTTATTTATTGGTTTACCGCTAATTACGCTTTCTACAACACA
GATTCGTTGGGAAGCTGGTAAAATTGCTGAGATTGTTAAATTATTATCTG
AAATCAAAACCCTGACCCATTTAGACTTAATAAAAAGTAATCATTCAGAT
TATAAACTTTCCCTTGCGgattttgaacttttcaaaattttaccagTAGT
AATGTTTTTGGAGTTGGAAGCTTTAGATTTGACAAAGAAAAACGTTCCAG
AATTTCGTAACATCATGCTTgagatgaaaattgaagatattTACTGGTCT
TCTACGGGTGAATATtcgaattttgatatttctctaAAATCACATGGACC
AGATGATTACAAAACCATTTAAATCATTTAAAGATCAGGATNAGGAGCTA
gtctttttttcattattttattctGTTCCCTCTAGACAataataaaagaa
gaaaaatatacaGAAAGGGAAATATAAAAGATAACTAAagtgcaaccgat
atgaaccGAGAAAGCACACTTGAAGAAGCAATTCGTAATACCAGAAATTT
ATTGGGCGTTTCAATTAACCTCAGGAAGAAAAAGTTTGAACAATATCTTT
CAGATGCTACAAAACAATTCGAATAAGCGATAACACAATCAAAACATATT
TTAGAAACATCAATCACAATTGCAAGGAGATCACTTGAAGATGTCATTTC
ACAGTTGTCTTTAAATCCATCATTGACTCAGATCAATGCGAATTCTAAAA
GAGGTTTAAAGGAAGATGAACGCGAATTGAAAATTTCTAGACAAGAACGC
TCTTGTACTAGTGATAATCCAATTAATCACAACTACCTCAGCACCACTAT
AAAACAAGGGTTTGCAGATGATATTGATATTTCAACCACTGGTGATGACA
TTTCCTTTAGTCAACAACGCTGACCTGCTGAGAATTTTAAGTATACCCCA
CGTAATGATGAGACATCCCAAAAACAATATTTGGCAGACATTTCAATGCC
ATTATACAGTGAAGAAAACTCGCCCCTTAGTCAACACTGTCCAGCAAATG
AACTGCTAACTCCTTCAGTGGAACCTATAGGTCAGCAATCACAGACAAGC
TTGGACCATAATCGGGTACACATTGATTTGTTGTGCAACCTGCTACCAAA
TGTTATCGGTTTAGAATTCCGTCATAAAATGGTGCATCGCTTGAAAGATT
TACGGGAAGCTTACACAGTTGAAGACCTTCAAGCTAATGGCTCAGAAAAG
TTTAATTCAACCAGATTGGATAGTATTCTATTTTTCAATGGATTGGTTGA
ACATTTttgcaaagaaaataaaaacgaaTACAAGTCATTGTATGAATTGG
TGTGGTTTTCTTCGccttcctttgaaaatgaagTATTAGATGAAGTTGGT
TCAAATATCTTCCCAAGGAGTTCACTTCCCATAGAGAAGATGAAGAAATA
CCATGGCATGGAGATGAAAGGTACCATTCCATTAAAATATATCGTACAAT
TAGTACAATTAGAAGAGCATAAATTGTTGGATATACATTTATCAAAATTA
CCTAAGATGGCTGTTCGCACTGACTTCAGAGTAAGAATACTTAACTTACT
TCAAACATATCTTTTACAATTTCATTGTTGTGTGGTGATTTTTTCATTGG
AGATGCTTCAGATCCGGCGGAAGCAGTGAGACTGGGGAGACTCCCCATTG
TTGCGTAAATGAGATTTTTCCcctcaaattcctagcgaattttatctcat
tttgagagAGGAAGAATGTGATCTTTTAACAATATAGTGAACACAGATTC
TTTTCCTTCCCTTAGATAGTCTTAGTATTCGAG
Run BLAST on NCBI

protein sequence of TCONS_00059566-protein

>TCONS_00059566-protein ID=TCONS_00059566-protein|Name=TCONS_00059566-protein|organism=Clytia hemisphaerica|type=polypeptide|length=399bp
MDINLLPDEILEIIIAFSEKEDAKALSRTSKRMYNLTIERIWSKPRFYGK
RDHSFLTKITKFPIKELHTNDFNCLWSKICDIVSGLDLLHIDYNDNDETF
EDRLDDICEIAKPPIVLHTNALNMKYRDDFDLFLNGILGGACSIRKLIIN
PKFSSDERRNCAWSPKQLEMVSEKVFIEEILSSSLSITDFDELVKVLCKL
KGTRVNISETFNNQYILTVEDLDKLASNNIKVFKIDCVALEYGLSSDGLT
KFAPVLSKFQSLEEFSIRHAYCQDPIPIQLFIGLPLITLSTTQIRWEAGK
IAEIVKLLSEIKTLTHLDLIKSNHSDYKLSLADFELFKILPVVMFLELEA
LDLTKKNVPEFRNIMLEMKIEDIYWSSTGEYSNFDISLKSHGPDDYKTI
Run BLAST on NCBI

transcript from alignment at scaffold_329:817807..830109+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059566 ID=TCONS_00059566|Name=TCONS_00059566|organism=Clytia hemisphaerica|type=transcript|length=12303bp|location=Sequence derived from alignment at scaffold_329:817807..830109+ (Clytia hemisphaerica)
TAATATCGGTTTAGAATTCCGTCATAAAATGGTGCATCGCTTGAAAGATT TACGGGAAGCTTACACAGTTGAAGAACTTCAAGCTAATGGCTCAGAAAAG GTattgtttaatttttagttagggaattacatgtttttctttcataagCA AAACGTTTATGAGAATATaaaggctcagtttttggtaccttaacaatggc tctattgtttgagaacaatagaatgctaagcataatgcgagcctgatata gggacagacacttgcttataaaaaaaatgtaagtgTTTATTCCTGAGAAA ATGTTATTCTGTTTACAGCTAAGGGTAACATTTTATAAGCAGTTCACTAT AATATTTGTAAACACGGCCAGTCttacattttcatcttaaaacaACTTTT CTGAAGTGATTACTTACGGATTTGAGGCCAACAAATTGCTTGCACTTGCC GAATTGGACTGGCAGAGTTGTGAAGTCTTTCAGGTTTCTCAGAGGATACT CACTGTATAACAAAGAAGGAAAATTGTCTTTATGGAAGAATACAATCGAT TTTGAAAAGGTGGCTCTTTATCCAAACCGAAtgatttttattagtttttt tttcataaagggCGGGTGAATGTGACTAAGCCAAACCTGAAAGACTTCCA GTAGCTTAGACAAGAGGAGCCACagtacattttatttttattttacgaat gGATAAAAACAGTGTCATGAAAATCTgcacacaaattttgcgccccacTT GTCTTCGCTTCTGAATTTTTATCCCCAGAACAAGTCAATTTTCTTTCCAT TTCAGTTTAATTCAACCAGATTGGAAAGTATTCTATTTTTCAATGGATTG GTTGAACATTTCTGCTAAGAAAATAAAATCGAGATGAAACTACATATTCC AAACAAATACAAGTCATTGTATGAATGGATGTGTTTTACTTCGccttcct ttgaaaatgaacTATTAGATGAAGTTGATTCAAAGATCTTCCCAAGGAGT TCACTTCCCTTAGAGAAGATGAAGAAATACCATGGTCTTGAGATGAAAGG TACCATTCCATTGAAATATATTGCATTGGTGAAGTGCAATTAGAAGAGCA TAAATCGTTGGATAGACATTTATCACAGTTACCGAAAACGTTTGGTCGCA CTGCCATGAGAGTAAGAATACTTTACCAACTTCAAATATATCTTATACGA TTTCATTGTTGTGAGGTGATTTTCTCATTAGAGATGCTTCAGACCCGGTG GAAGCAGTGAGACTGGGGAGACTCCCCATTGTTGCGTAAATGAGATTTTT CCcctcaaattcctagcgaattttatctcattttgagccttcagcctgcT CTCTCTTACAGGAGAGGAAGATTGTGATCTTTTAACAATATAGTGAACGC AGGTTCTTTTCCTTCCCTTAGATAGTCTTAGTATTCATTCCAGTATTTCC ATCAATGGTTTTTaccatacacgcttttttttataagaatacactttata agaatgtccatgatgaaaatggccaaaaaattaagaatatgctaagaatc accatcatggaattttgctactcaagctaagaatgctattgttagagcat tttcaattataaattgtcaattacccccaagtaaggcccactcctttcac aaaaatgccatgcTTGAGACGCATGTACTAAATGTTATATCTAGTCTGAA TATTAGAACCATAACCtaagaatgctgtaagaatattttaggatgatttt cccaaaaaagttaagaatatccatgatgaaatggatttacaccattctta tataaaaaaaagcgtgtatcattGATTTTGTGGTTTTTGGGTTTGTTTTC TCTAGTTTTTAGGTTCAAAACTTTCATTTGGAAAGGTGGATTTTGGTCTT TAACAACAAAACTGTAATGCTTTTTTCATGTCTCTCCCTTTCAGATAGCC CAAAAGAAGACTTTTGAGGTCTTTAACAATCAAATTGAAAGTTATTGTAA TAAACGGGTTTTGAATATCCAGGAATTTGTTAAAAATATgagaaagaata aagaaatcGAAATGGAAGATGTACTGTCTAATCAAGATACAGGACATACT ATGgaatataataataatagtaataataatatACTAAGCCTTCAATTTGT ATAGTCAGAATGTTTGTACAGATTTGTATGTCAGGTCTGCGGCTGAAATC TTACTTTGTGTTTTACTGGAAAACGAAAATGGTGTCTTCACAATCAAGTC TTCCAAAGGAGAATGGATCCTATATTTAGCAAACTAATTGAACTTAATTA ATGatgaaatttgtgtttttgataTAATGAGGTAATCTCGTCGTTTTGAG TTCTCGGTGTTAATTGAATGAAAACTAAcacatgaaaaaattttcgattt ccaaggctggaaatttcaagttttcttagttggaaaaaagataaaatcca atggaaaatccaacctggaaatgtgggacattctccaaggctggaaattt caagttttcttagttggaaaaaagataaaatccaatggaaaatccaacct ggaaatgtgggacattctccaaggttggaaattttgcattttccatggca tagaattttcaaaaatttagttggaaaaaagccaaaatccaaatttaaca aggctggaattttttaaaattcagttggaaaaaagccaaaatccaaattt aacaaggctggaattttttaaaattcagttggaaaaaaagacaaaatcca aatttaacaaggttggaattttcaaaaattcagttggaaaaaagccaaaa tccaaatttaacaaggttggaattttttggccacttttttttctcaatgt gTTCTTAGAGTATGTTTCAGTCAGatattttgatctgttctgattagagA TTTGTAAATCATTCAGAAATGATTATGTGTTCTAAcgcgagacaggggta taatcaaggttATCTAGCGCGATCTTGTTGCCTAGCAACCCAAGTAAGTT TCAAAACACATCTTTTGTGGAAAATAACGAACATCTTGCGAGTACTCtct ggtacctaatagccggggggtttggaataagcaaagggattggaaaaaat ctcaacacTTGATAAGCGGGAAGGAGGGGGTGGCAATAAAAATGTCgtag gtggaaaattttcaaaaaggagGGTAATATATGGAATGCCATAGCTGCTA TAAGTGCACTTTACGCAAGAcctcttttttcaatttccaatggaaatttg aaagGGACTttgccaaaaaatatttttgaaccaAACTTAAAAAGTCAAGT AACtacttttcatatttttactgGTATCAAAGAAGTGCTAATAATGCTTA TTTTAACCGATATGCTTAATTTGGCagttaaaaaggaaaaaatcgtTAAA ATGTAATTTCTCAATAGTGTCATCcgtgaaattaaatccccgtGAAATGA TAAAATGTCGCGGATAAGTTCAACCGCGAAGTTTAATCCCTGCGTAAATT TATCCGTTTAAAGTAACAGTCTTTCAATGTTTTCAAGTCCTAACATCATA AATCTCGGGATATTCTTTGGATCTTAAGCATTCTAAACCTTATTCTGTTT TCTTAACTAGATAAACAACAAAAGAATTACGTAAACAAAAGACCAATTGT GTTCAAAGAATCAAGCTCAAATGGATATCAATTTATTACCAGATGANNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNTGTAGGGATTCTCATGCTTGGTTGAGTTACGTAATT TCGGTCATTATGGGAGCAAACATTCGAataggctcttccagaaaatggaA AGATATATTGGATATATGGTCcggaaaatagtcaaaaaattcaaaatttg ccttgattGGGGGCAAAACTGCTCTGTTTAGGGGTATTTATGAATGTCCG GTGGTCAAAAGTCTCAATGTCCAATCTGTAGATGCATTCCTTACACAATT CGTATGTTGGCTTcgataatggcggaaattacgtaacatGAAAATCTCTC TGCGCAACGGTACTATATTTAAATGGACGTCCTTCTTTTCAAGATGCATC CTTAAGATTAAGGACGATTTTCCCACTGATTATTACCAATCTATTTTCCG TAAACGTTGATTTACTTTAATGGGACGAATTTCTGCAGGGAATAAATTTC GCGGGCTTTGCAAAAAGGCCTTTccaaggaaatatttttgaagaaaactt aAAAACTCAAGTAACTATACTTTACATATTGTTTACTGGTAAAAAAGCAG TGCTAATAATCCTTTTTTCGATAACCGACATGCTTAATTTGGCAGTTAAA AGGCAaaaaaccatgaaaatattATCTCTCAATAGTGTCATCcgtgaaat taagtccccgtgaaatgaaaaaaattcgcaGATAAGTTTAACAGCGAagt ttaatccccgcgaaaatttattcttttaaagTAACAgtctttcaagtttt tcaagttCTTACAGGGCTcaaaataacggtcggacattggacattgtccg acccaaatagcttcatgtccgacccaaaaatcataattttcaagctaaag caaccctgatcggacattttgtcccacccacttgaaatcgttatttcgag ccttatCATAAATCTCGGGATATTCTTTGGATCTTAAACATTCTAAACCT TACTGTCTTTTCTTCACTAgataaacaacaacaaaaaaaaaacacgtaaa CAAAAGTGTTCAAAGAATCAAGCTCAAATGGATATCAATTTATTACCAGA TGAGATACTAGAAATAATCATTGCGTTCTCGGAAAAGGAAGATGCAAAAG CTTTATCACGAACATCAAAAAGAATGTATAATCTTACTATTGAACGAATT NAAGCTTTATCACGAACATCAAAAAGAATGTATATTCTTACTATAGAACG AATTTGGTCAAAACCAAGATTTTATGGGAAACGAAATCATTCCTTCTTGT CAAAAATAACGAAATTTCCTATTAAAGAATTGCATACAAATGAGTTTAAT TGTCTTTGGTCTAATATTTGTGATATCGTTTCTGGGCTTGAGTTAATACA TATTGATAATAACAACAATAATGCAACCTTTAAAGACAGATTAGACGATA TTTGTGAAATTGCAAAACCATCAATTGTTCTGCACACAAATGCCCTTAAT ATGAAATACAGAGACgactttgatttgtttttgaaagaaattctcGGCGG TGCTTGTTCGATACGAAAGTTGATAATCAATCACAAGTTTAGTAGTGATG AAAGAAGAAACTGTGCTTGGTCACCTAAACAACTTGAAATGGtcaatgaa aaagttttcattgaGGAACTTTTGTTGAGTTGTTTATCGATCACTGATTT TGATGAGCTTCTTAAAGTTTTGTGTAAACTTAAAGGAACACGTGTCAACA TTTCCAAAACAAGCTTCAATAACCAATATCTTTTAACTGTTGAAGATTTG GATAAACTTGCAACGAATAacataaaagttttcaaaattgattgTGTTGC CCTTGNNNNNNNNNNNNNNNNNNTGCTCctgtaatttcaaaatttcaatc tttGGAAGATTTTAACATTCGTCATGCTTACTGCAAAGATCCAATACCTA TTCAGTTATTTACCGATTTACCGATAATTATACGCTTTCTACAGCACAGA TTTGTTGGGAAGCTGGTAAAATTGCTGAGattgttaaaatattatctGAA ATCAAAACCCTGACTGATTTAGACTTGGAGGTAAATAATCATTCAGATTA TAAACTTTCCCTTGCGGATTTTGAACgtttcaaaattttaccaaTAGTCA TGTGTTTGGACTTGGATGCTTTAGATTTGACAAAGGAAAACGTTCCAGAA TTTCGTAAAATCATGCTTgagatgaaaattgaagatatATACTGGTCTTC TACGGGTGAATATtcgaattttgatatttctctaAAATCACATGGACCAG ATGATTACAAAACCATTTAAATCATTTAAAGATCAGGANNNNNNNNNNNN NNNNNNNNNNNGAAGATATTTACTGGTCTTCTACGGGTGAATATtcgaat tttgatatttctctaAAATCACATGGACCAGATGATTACAAAACCATTTA AATCATTTAAAGATCAGGATACAGTATGCCATACTTATAAGGGNATATTT ACTGGTCTTCTACGGGTGAATATtcgaattttgatatttctctaAAATCA CATGGACCAGATGATTACAAAACCATTTAAATCATTTAAAGATCAGGATA CAGTATGCCATGCTGATAAGGACGGTATGCATAAACCTGCCACCCAAATC TTccgagtgaatatagttggacagaagtttttatttctttaatttttatt ttatttcactgatgattggtgcctgagcaccatgaaactctgagtttgaa acatagatattgtgtcaactctttattaaatttctttaaatatagataac ctccaagcagctcttcgtgctccacacattccacgcatgcgctctaaagg gaatggttctgcaagaagacctgcgaaggttctcgggttttctttgatgg ccgacactctgaaatttcagagtactTTTCACGATTCAATCGCGGGCATT CGCATAGAATTTATCGATTTACTCGGGCCGTCTTTGGATGCGTGGGCTAA AGAAAACCGATTCTACTGCGACCGTGGCTTTCTTGCTCCGAACCAAATTT CAAGATGGCGCCTGAAATTCACGTTTTGGCTAttggtcaatgttttgatt ttttttatggaTTCTGAGACTTATAAAGGAAAGTTCAATGTTCCAaatgt tgtttatttattttagtgtAGCTCTGACATACACCCACAGAANNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATCCTT TTAAAGTAACAGtctttcaaggttttcaagtcCTAACATCATAAATCTCG GGATATTCTTTGGATCTTAAACATTCTAAACCTTGTTCTCTTTCCTTAAC TAgataaacaacaacaacaaaagaattACGTAAACAAAAGACCAATTGTG TTCAAAGAATCAAGTTCAAATGGATATCAATTTATTACCAGATGAGATAC TAGAAATAATCATTGCGTTCTCGGAAAAGGAAGATGCAAAAGCTTTATCA CGAACATCAAAAAGAATGTATAATCTTACTATTGAACGAATTNCATTGCG TTCTCGGAAAAGGAAGATGCTAAAGCTTTATCACAAACATCAAAAAGAAT GTATAATCTTACTATTGAACGAATTTGGTCAAAACCAAGATTTTATGGGA AACGAGATCATTCTTTCTTGACAAAAATAACGAAATTTCCGATTAAAGAG TTGCATACAAACGATTTTAATTGTCTTTGGTCCAAAATTTGTGATATCGT TTCTGGACTTGACTTATTACATATTGATTATAACGACAATGATGAAACCT TTGAAGACAGATTAGACGATATTTGTGAAATTGCAAAACCACCAATTGTT CTGCACACAAATGCCCTTAATATGAAATACAGAGACgactttgatttgtt tttgaacGGAATTCTCGGCGGTGCTTGTTCGATACGAAAGTTGATAATCA ATCCCAAGTTTAGTAGCGATGAAAGAAGAAACTGTGCTTGGTCACCTAAA CAACTTGAAATGGTCagtgaaaaagttttcattgaGGAAATTTTGTCGAG TTCTTTATCGATCACTGATTTTGATGAGCTTGTTAAAGTTTTGTGTAAAC TTAAAGGAACACGTGTCAATATTTCTGAAACGTTCAATAACCAATATATT TTAACTGTTGAAGATTTGGATAAACTTGCATCGAATAACATAAAAGTTTT CAAGATTGATTGTGTTGCCCTTGAATATGGTTTGTCGAGTGATGGCCTTA CAAAGTTTGCTCCtgtactttcaaaatttcaatctttGGAAGAGTTTAGC ATTCGTCATGCTTACTGCCAAGATCCAATACCTATTCAGTTATTTATTGG TTTACCGCTAATTACGCTTTCTACAACACAGATTCGTTGGGAAGCTGGTA AAATTGCTGAGATTGTTAAATTATTATCTGAAATCAAAACCCTGACCCAT TTAGACTTAATAAAAAGTAATCATTCAGATTATAAACTTTCCCTTGCGga ttttgaacttttcaaaattttaccagTAGTAATGTTTTTGGAGTTGGAAG CTTTAGATTTGACAAAGAAAAACGTTCCAGAATTTCGTAACATCATGCTT gagatgaaaattgaagatattTACTGGTCTTCTACGGGTGAATATtcgaa ttttgatatttctctaAAATCACATGGACCAGATGATTACAAAACCATTT AAATCATTTAAAGATCAGGATNAGGAGCTAgtctttttttcattatttta ttctGTTCCCTCTAGACAataataaaagaagaaaaatatacaGAAAGGGA AATATAAAAGATAACTAAagtgcaaccgatatgaaccGAGAAAGCACACT TGAAGAAGCAATTCGTAATACCAGAAATTTATTGGGCGTTTCAATTAACC TCAGGAAGAAAAAGTTTGAACAATATCTTTCAGATGCTACAAAACAATTC GAATAAGCGATAACACAATCAAAACATATTTTAGAAACATCAATCACAAT TGCAAGGAGATCACTTGAAGATGTCATTTCACAGTTGTCTTTAAATCCAT CATTGACTCAGATCAATGCGAATTCTAAAAGAGGTTTAAAGGAAGATGAA CGCGAATTGAAAATTTCTAGACAAGAACGCTCTTGTACTAGTGATAATCC AATTAATCACAACTACCTCAGCACCACTATAAAACAAGGGTTTGCAGATG ATATTGATATTTCAACCACTGGTGATGACATTTCCTTTAGTCAACAACGC TGACCTGCTGAGAATTTTAAGTATACCCCACGTAATGATGAGACATCCCA AAAACAATATTTGGCAGACATTTCAATGCCATTATACAGTGAAGAAAACT CGCCCCTTAGTCAACACTGTCCAGCAAATGAACTGCTAACTCCTTCAGTG GAACCTATAGGTCAGCAATCACAGACAAGCTTGGACCATAATCGGGTACA CATTGATTTGTTGTGCAACCTGCTACCAAATGTTATCGGTTTAGAATTCC GTCATAAAATGGTGCATCGCTTGAAAGATTTACGGGAAGCTTACACAGTT GAAGACCTTCAAGCTAATGGCTCAGAAAAGGTattgtttaatttttagtt agggaattacatgtttttttcttttataagcaaaacatttataagcatat gaaggctcagtttttggtaccttaacaatggctctattgtttgagaacaa tagaatgctaagcataatgcctGATATAGAAGCAGACACTTATAAAATAC ACGTAAGTGTTTATTCTTGAGAAATGTTATTCTGTTTGTTACATCATGGG TAACGTTTTATGTGCAGTACACTATAATATTTGTAAACACACCTAGTTTT ATATTTTGATCTCAGAATGATTTTTATGAAGTGATTACGGATTTGAGGCC AACAAATTGGTTTGCACTTGCCGATTTCTTACTAGTTGTTAAGTAGAAGT CTACCAGGTTCATCAAGGGAggcgtccacatagtacgtacgcactaaagg GGGGAGTCATCttaaaagcgtatgcttgcgtacggaaatgtacgtacgca gagaaaatcttttcatagcccttttttgcttgttttttgtcgatttttac gCTTCTtttacgcatcaaggaaaaaaaaagtttcttaataaaaattgagt ttcatgtatgaattaaaggtccgaaccaaacgatttgaattcgaaatttt cttcaaccgaggggggtTGTGGatgaaaagtacgtacttaccaggggggg ggtaaagccatttgcgtacgcttgcgtacagggggtatccgattttcgac attttagtgcgtacgtactatgtggacgccCCAAGGATACTTATAACAAA GAAAGGAAATTTGTTATTATGGAAGAATACAATCGATTTTGAAAAGGTGA CTCTTTATCCACTCACTCCCAGTTTTTAGGGTTTTATATGAGACCTTTTA GATGCTAATTTGAAGAAAGACCTTATCAGTCTGAATTCAAACCTTTTAGA TTTAGTTTTGAGACCTTAGCCGGTTATGATTTTATTTGTCTCTTTTTTTC TCATAGAGGGCGGGGGAATGCCAAACCTGAAAGACTTCCAGCAGCGTAGA CAAGATAGAGGGCGCAAAATAACCACAGTATATTATCTTattattatcaa attttgcgcccctcttgtctacgctactgaatGTTTTCCTCAGAACAATT CAATTTTCGTTCCATTTCAGTTTAATTCAACCAGATTGGATAGTATTCTA TTTTTCAATGGATTGGTTGAACATTTttgcaaagaaaataaaaacgaaTA CAAGTCATTGTATGAATTGGTGTGGTTTTCTTCGccttcctttgaaaatg aagTATTAGATGAAGTTGGTTCAAATATCTTCCCAAGGAGTTCACTTCCC ATAGAGAAGATGAAGAAATACCATGGCATGGAGATGAAAGGTACCATTCC ATTAAAATATATCGTACAATTAGTACAATTAGAAGAGCATAAATTGTTGG ATATACATTTATCAAAATTACCTAAGATGGCTGTTCGCACTGACTTCAGA GTAAGAATACTTAACTTACTTCAAACATATCTTTTACAATTTCATTGTTG TGTGGTGATTTTTTCATTGGAGATGCTTCAGATCCGGCGGAAGCAGTGAG ACTGGGGAGACTCCCCATTGTTGCGTAAATGAGATTTTTCCcctcaaatt cctagcgaattttatctcattttgagagAGGAAGAATGTGATCTTTTAAC AATATAGTGAACACAGATTCTTTTCCTTCCCTTAGATAGTCTTAGTATTC GAG

Coding sequence (CDS) from alignment at scaffold_329:817807..830109+

>TCONS_00059566 ID=TCONS_00059566|Name=TCONS_00059566|organism=Clytia hemisphaerica|type=CDS|length=2400bp|location=Sequence derived from alignment at scaffold_329:817807..830109+ (Clytia hemisphaerica)
ATGGATATCAATTTATTACCAGATGAGATACTAGAAATAATCATTGCGTT
CTCGGAAAAGGAAGATGCAAAAGCTTTATCACGAACATCAAAAAGAATGT
ATAATCTTACTATTGAACGAATTTGGTCAAAACCAAGATTTTATGGGAAA
CGAGATCATTCTTTCTTGACAAAAATAACGAAATTTCCGATTAAAGAGTT
GCATACAAACGATTTTAATTGTCTTTGGTCCAAAATTTGTGATATCGTTT
CTGGACTTGACTTATTACATATTGATTATAACGACAATGATGAAACCTTT
GAAGACAGATTAGACGATATTTGTGAAATTGCAAAACCACCAATTGTTCT
GCACACAAATGCCCTTAATATGAAATACAGAGACgactttgatttgtttt
tgaacGGAATTCTCGGCGGTGCTTGTTCGATACGAAAGTTGATAATCAAT
CCCAAGTTTAGTAGCGATGAAAGAAGAAACTGTGCTTGGTCACCTAAACA
ACTTGAAATGGTCagtgaaaaagttttcattgaGGAAATTTTGTCGAGTT
CTTTATCGATCACTGATTTTGATGAGCTTGTTAAAGTTTTGTGTAAACTT
AAAGGAACACGTGTCAATATTTCTGAAACGTTCAATAACCAATATATTTT
AACTGTTGAAGATTTGGATAAACTTGCATCGAATAACATAAAAGTTTTCA
AGATTGATTGTGTTGCCCTTGAATATGGTTTGTCGAGTGATGGCCTTACA
AAGTTTGCTCCtgtactttcaaaatttcaatctttGGAAGAGTTTAGCAT
TCGTCATGCTTACTGCCAAGATCCAATACCTATTCAGTTATTTATTGGTT
TACCGCTAATTACGCTTTCTACAACACAGATTCGTTGGGAAGCTGGTAAA
ATTGCTGAGATTGTTAAATTATTATCTGAAATCAAAACCCTGACCCATTT
AGACTTAATAAAAAGTAATCATTCAGATTATAAACTTTCCCTTGCGgatt
ttgaacttttcaaaattttaccagTAGTAATGTTTTTGGAGTTGGAAGCT
TTAGATTTGACAAAGAAAAACGTTCCAGAATTTCGTAACATCATGCTTga
gatgaaaattgaagatattTACTGGTCTTCTACGGGTGAATATtcgaatt
ttgatatttctctaAAATCACATGGACCAGATGATTACAAAACCATTTAA
ATGGATATCAATTTATTACCAGATGAGATACTAGAAATAATCATTGCGTT
CTCGGAAAAGGAAGATGCAAAAGCTTTATCACGAACATCAAAAAGAATGT
ATAATCTTACTATTGAACGAATTTGGTCAAAACCAAGATTTTATGGGAAA
CGAGATCATTCTTTCTTGACAAAAATAACGAAATTTCCGATTAAAGAGTT
GCATACAAACGATTTTAATTGTCTTTGGTCCAAAATTTGTGATATCGTTT
CTGGACTTGACTTATTACATATTGATTATAACGACAATGATGAAACCTTT
GAAGACAGATTAGACGATATTTGTGAAATTGCAAAACCACCAATTGTTCT
GCACACAAATGCCCTTAATATGAAATACAGAGACgactttgatttgtttt
tgaacGGAATTCTCGGCGGTGCTTGTTCGATACGAAAGTTGATAATCAAT
CCCAAGTTTAGTAGCGATGAAAGAAGAAACTGTGCTTGGTCACCTAAACA
ACTTGAAATGGTCagtgaaaaagttttcattgaGGAAATTTTGTCGAGTT
CTTTATCGATCACTGATTTTGATGAGCTTGTTAAAGTTTTGTGTAAACTT
AAAGGAACACGTGTCAATATTTCTGAAACGTTCAATAACCAATATATTTT
AACTGTTGAAGATTTGGATAAACTTGCATCGAATAACATAAAAGTTTTCA
AGATTGATTGTGTTGCCCTTGAATATGGTTTGTCGAGTGATGGCCTTACA
AAGTTTGCTCCtgtactttcaaaatttcaatctttGGAAGAGTTTAGCAT
TCGTCATGCTTACTGCCAAGATCCAATACCTATTCAGTTATTTATTGGTT
TACCGCTAATTACGCTTTCTACAACACAGATTCGTTGGGAAGCTGGTAAA
ATTGCTGAGATTGTTAAATTATTATCTGAAATCAAAACCCTGACCCATTT
AGACTTAATAAAAAGTAATCATTCAGATTATAAACTTTCCCTTGCGgatt
ttgaacttttcaaaattttaccagTAGTAATGTTTTTGGAGTTGGAAGCT
TTAGATTTGACAAAGAAAAACGTTCCAGAATTTCGTAACATCATGCTTga
gatgaaaattgaagatattTACTGGTCTTCTACGGGTGAATATtcgaatt
ttgatatttctctaAAATCACATGGACCAGATGATTACAAAACCATTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037478XLOC_037478Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059566-proteinTCONS_00059566-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059566-exon-scaffold_329-1491911889:817807..817906TCONS_00059566-exon-scaffold_329-1491911889:817807..817906Clytia hemisphaericaexon
TCONS_00059566-exon-scaffold_329-1510915933:817807..817906TCONS_00059566-exon-scaffold_329-1510915933:817807..817906Clytia hemisphaericaexon
TCONS_00059566-exon-scaffold_329-1575043694:817807..817906TCONS_00059566-exon-scaffold_329-1575043694:817807..817906Clytia hemisphaericaexon
TCONS_00059566-exon-scaffold_329-1491911889:818612..818967TCONS_00059566-exon-scaffold_329-1491911889:818612..818967Clytia hemisphaericaexon
TCONS_00059566-exon-scaffold_329-1510915933:818612..818967TCONS_00059566-exon-scaffold_329-1510915933:818612..818967Clytia hemisphaericaexon
TCONS_00059566-exon-scaffold_329-1575043694:818612..818967TCONS_00059566-exon-scaffold_329-1575043694:818612..818967Clytia hemisphaericaexon
TCONS_00059566-exon-scaffold_329-1491911889:826160..826311TCONS_00059566-exon-scaffold_329-1491911889:826160..826311Clytia hemisphaericaexon
TCONS_00059566-exon-scaffold_329-1510915933:826160..826311TCONS_00059566-exon-scaffold_329-1510915933:826160..826311Clytia hemisphaericaexon
TCONS_00059566-exon-scaffold_329-1575043694:826160..826311TCONS_00059566-exon-scaffold_329-1575043694:826160..826311Clytia hemisphaericaexon
TCONS_00059566-exon-scaffold_329-1491911889:826395..828386TCONS_00059566-exon-scaffold_329-1491911889:826395..828386Clytia hemisphaericaexon
TCONS_00059566-exon-scaffold_329-1510915933:826395..828386TCONS_00059566-exon-scaffold_329-1510915933:826395..828386Clytia hemisphaericaexon
TCONS_00059566-exon-scaffold_329-1575043694:826395..828386TCONS_00059566-exon-scaffold_329-1575043694:826395..828386Clytia hemisphaericaexon
TCONS_00059566-exon-scaffold_329-1491911889:829527..830109TCONS_00059566-exon-scaffold_329-1491911889:829527..830109Clytia hemisphaericaexon
TCONS_00059566-exon-scaffold_329-1510915933:829527..830109TCONS_00059566-exon-scaffold_329-1510915933:829527..830109Clytia hemisphaericaexon
TCONS_00059566-exon-scaffold_329-1575043694:829527..830109TCONS_00059566-exon-scaffold_329-1575043694:829527..830109Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_329supercontigscaffold_329:817807..830109 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (2.54481 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.54481 2.10905 0.507365 0 0.640982 0.0667866 0.483815 0.728383 0.540851 0.167049 0 0 0.687655 0 0.636493 0.985953 0.234442 0.567101 0.259825 0.404839 0.741904 0.831036 1.38211 1.5739 0.808288 0.754521 0.420143 0.385782 0.461172 0.697279
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR032675L_dom-like
IPR001810F-box_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059566 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
50010001500200025003000Sequence
Match NameE-valueIdentityDescription
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