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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059568 ID=TCONS_00059568|Name=TCONS_00059568|organism=Clytia hemisphaerica|type=transcript|length=1111bp
aNAAAAGATGagatcttttatttttttcacagCTCTGTTGAAGAGGTTGT
GAAGCAAATGCAACTTTATGACGAAGATTATGAAATTGATTGGCATCACA
AATTAGCAAATCATTTCATCAAAAGCTCCGAAAATAATTTCCGTACATCA
GACACTATTTTATATCATCTGGTCAAAGGACAAATGAGAGATGAGATTCG
TGCTTTCTTTCGAAACGATCCACGCAGTTTACGGATAGGGCATGCTCGTA
AAAGTCTCGTATTGAAGACATTTCGGTGTACGATGAGGACTACAATACAC
GACGCTTCACTTTACGTTTGTCGGCAATGTGATATCACGAAGAAGTTACA
TCCATCTAGCGTTCTCTCCGCTGCTGAAAGTTGTTTATTATGTGGCCAAT
CAATTAAGCATGAGATCCGATTCGATGAGAAGTCGTCATCAAATTTCGTT
GGACTAAATTTAATTGATCGTGCTGCACGTGTGTGTCAGCTGCACGCTAC
ACGGGAACAGATGCTTTCACGATTGGTACAAGCACATTCTACGTTTCTGC
TACCGTGTTATAGTTGTGAGAGAAAATTTATGCCACAAACAATGGTAGCT
TTAAAATGTTGTAACTTGTGTAGGATGAACGGTAATTCATGTATTGAATT
TAatgtttaagaatttttttggtGTAATACGGACATTTTAGTCAAGCTTA
AACATGTTGTACCCTCTACCACGGAAataataccctacaatttccgCGCC
ATTGGAGAATTGACTTTGTGTTTACATCCCTCCATttgaatttcaatcca
aaaccATCACACTGGACTATTTGACATAGGAATAGAATTTTCCCACTGGT
GGTAacaagttccaccggggctgtgagacagggttgctattatttaaatc
aaaagtgtagggaaaatgtttcccagcttttttttcttgaacTAAAAAGT
TTTTATGCATAATGTAGGCTCTAAGGCTGACAGTCAAGGTTAGTGGCTTG
CAGCTTAGAATACTCTTTAATATTagaaaatatattgaatattataaatt
aaaatatttatgtcATAGTTCACATATCATTACCAAATTTAATAGAAAAC
CAATCCGAATA Run BLAST on NCBI transcript from alignment at scaffold_329:30279..34608- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059568 ID=TCONS_00059568|Name=TCONS_00059568|organism=Clytia hemisphaerica|type=transcript|length=4330bp|location=Sequence derived from alignment at scaffold_329:30279..34608- (Clytia hemisphaerica)
ANAAAAGATGAGATCTTTTATTTTTTTCACAGCTCTGTTGAAGAGGTAAA
TAGTTCAGATGAGATAGAGTTTTCATAAGATACTTTAATAATTGGTCATT
TGAAATAATGAAAATGACGCGTTCTTTAGAAAAAGTAACAAAATTGTTTT
ATTACTAGTTAACGACCAACCAAATCAAATAAGAGCTTGTAAAAACTCCA
TCTCGTCCCAAATAGTTTGTATTTTTTAAGAGCTTTTTTAACTGGTGATT
TTGAAAACTGGTAATTATCTGAAAAGTCCTATTGGGAGTACAAAAAAGGG
GGATTGAATTAAAATTTCTTCTTTAGGCCATGCGAATGCAGCTAATATGA
TGGCATGAACAAACATTGGGCTTTTCCATAAATAGCCCCTTATATTGAGG
AGGTGTGACGTCCAAGGTGGTCTGGAAAATGGAAAATCCAGGGGTGTGGT
TTTTCGTGTGTAAAGATCAAGGGTGGTCAGTAAAATAAGGTTGGAAATTC
AAAATGGTCAATAAAACGAGGTCGAAAATCCAGGGTGGTTTCTAAATGAG
AAAAAAATCCAAGGGGCTACGAAAAATTGAAAAAATATCCTAGCGTTCAC
CTTTCCCACGTTACGTCCTCGCGTAGTTCAATTTTAAAAACTACCATAAA
ATTCTCGATCTAATGAGGGGTCACCGGCCTCCCAACTCCTTTTCAAACTC
GAGATATCGCAAGAAGAAAAACCAAACAGTATAGTACTTCTCGCTCCATA
ACTTGTTTTTTTCTTAAGGGCGTGTCTCAGGGTGCAAAACATCAAATTGT
ATGTAGAATCATGTATTTTTCAACGTGTTTTGATAATTTTGCACTAAACA
GGTTGTGAAGCAAATGCAACTTTATGACGAAGATTATGAAATTGATTGGC
ATCACAAATTAGCAAATCATTTCATCAAAAGCTCCGAAAATAATTTCCGT
ACATCAGACACTATTTTATATCATCTGGTCAAAGGACAAATGAGAGATGA
GATTCGTGCTTTCTTTCGAAACGATCCACGCAGTTTACGGATAGGGCATG
CTCGTAAAAGTCTCGTATTGAAGGTACCAATTCTTCTTGTTTAATTTCTT
GAATGCACTATTTAAAGTTTACCTAAAGTTTAAAGCATATATCTACCTAG
GAAGTCTTTGTAACTAAAGTCTGTCTCAATATAATATGCAACTTTTGTGT
GAATTTGAATTAGATACAGTATATGGCCCCCAAAACGGAGAAGGCCCCCA
AAACGAAGGTTTCTGACTTGTAGATTTATCAGAATCAAATGAGTTTTGTT
TATTTTGAAAGAATGATGATTATACTTTAAAATGAGCATGTTTTTGATGG
TTTGAGACAGATTCAAAATAACAAATTTGCGTCTGAAGGAAATATTTTAA
CACCAAAATTAGATCAAAATTGCATATAACTCACTCTAGCTCCTTGGATA
TTGAAAATAAGTTATGAAAATAGGGTATAGGAAACACCTAATGCCCTCCA
GAAAATGCAGATATATCTGTGACTTTAGAGGATGGGTAAAAGATATAGCA
TCTTAAAGGTCAACCAGTATTTAGGGACCCTAGAATCAACATTGATAAAA
CATAAAATTCTAAACATGAGAAACAGCAAAAAGTCTTGGAATTGCATTCC
TATCAGCTTGAGTTAATAGCTTATAACAAAAAATTAATATTATGTATAAA
AATTTTCGCTGAGTCAGCAAAAACGGCAAATTCTGTCATTTTTTTGCAAA
ATATAGGAGAAAAATACCTTTAAAGCTTAATATTTTCAGTTTCAGTTAAG
CTTTTTTTCTAAAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNTTTCAGTTTGGACTTTGCAATATCG
AAAATCTTGAAATATTTCATAAAAATCATAAATTTTATATCCATCGGGTC
GTAAATTTAAGGGTAAACACAAATAAGTTCATAGTTTTCCCCCCTATTAC
CACTGAGCTTAATAATTTTGATTTTAACTACACCTACATTTTGGGGGCCC
CAAACCTCCGTTTTGACAACCAGGGGTATACTGTAAAAATTTTATCAAAC
AAATTTATGCCCAAAACATTCTAAATCACATTTGAAAACTATGGTCAAAA
TTTTGTATTCATATCTTAAAGATATCTCGAGAAATTGCTAAAATTGCAAA
CCTCCGTTTTGGGGGCCATTAGAAAAAAGTTACCTATCTTTAAGCGATTG
AAAAATATTGTTGAAATTGAAAATTATGAAAAAGAACTTCCGGGAAATAA
AGTAGAGATGTTAAAGTTTTTCATGCAGCAAAAACTTTTGTAAAACCTCT
TTTCCTCTAGATTTGAGAGAAATTTTAAATTTAATCGACGTTTTGGGGGC
CACATACTGTAGTGGTTTTGTGCTTGTTTAAAAGATAAACAGGAGTATTA
TTGATAAGATAAAAAAATGAAGATCGAAAATGAAAAAGAAAACCAACCTC
AGTTATCATTTTCACACGAGTGATTCTTTGATCACAACATCATCAATGTG
AAAAAAAGTTTTCAAAAAGATTTATTCAATCGAAAGATATAGTTCAGAGA
TTATCACTGATTAACTTTCCAAACGATTTAAAAAAACACCAAAAATATCC
CCTTTTCAAATCAACTAGGGAAAAGTTTTAAGCTGACATCACTTCCGTAA
TGCTAGTGGAACCTAATAGCTTAATATAGTAAGTAAGTAAGTCTGCGATT
GCAGTCGGAAGCGGCCCGATAAGGCTCTTTTTTCGATAGCTCTGTCTGCC
CGAAGGTAGGGGAGGGTGCCAGTCTTTTCTCTTGGATTGTTCCACTTTCC
CTTCAAACTTCTCTTTATTGCCGAGAATCAAGCAGAGAGGCATCAAGTAC
CATTTTGTGAATCTTTAGTATGACCCGGCTTTGGGGTTGAACCCACAACC
TTGCGCACCGTAGCCGGATGCTCTATTGCACTACAGTCGCTGCTTAATAA
GATTTTGATATAATTATTACTATATTTGTCTTGTAGACATTTCGGTGTAC
GATGAGGACTACAATACACGACGCTTCACTTTACGTTTGTCGGCAATGTG
ATATCACGAAGAAGTTACATCCATCTAGCGTTCTCTCCGCTGCTGAAAGT
TGTTTATTATGTGGCCAATCAATTAAGCATGAGATCCGATTCGATGAGAA
GTCGTCATCAAATTTCGTTGGACTAAATTTAATTGATCGTGCTGCACGTG
TGTGTCAGCTGCACGCTACACGGGAACAGATGCTTTCACGATTGGTACAA
GCACATTCTACGTTTCTGCTACCGTGTTATAGTTGTGAGAGAAAATTTAT
GCCACAAACAATGGTAGCTTTAAAATGTTGTAACTTGTGTAGGATGAACG
GTAATTCATGTATTGAATTTAATGTTTAAGAATTTTTTTGGTGTAATACG
GACATTTTAGTCAAGCTTAAACATGTTGTACCCTCTACCACGGAAATAAT
ACCCTACAATTTCCGCGCCATTGGAGAATTGACTTTGTGTTTACATCCCT
CCATTTGAATTTCAATCCAAAACCATCACACTGGACTATTTGACATAGGA
ATAGAATTTTCCCACTGGTGGTAACAAGTTCCACCGGGGCTGTGAGACAG
GGTTGCTATTATTTAAATCAAAAGTGTAGGGAAAATGTTTCCCAGCTTTT
TTTTCTTGAACTAAAAAGTTTTTATGCATAATGTAGGCTCTAAGGCTGAC
AGTCAAGGTTAGTGGCTTGCAGCTTAGAATACTCTTTAATATTAGAAAAT
ATATTGAATATTATAAATTAAAATATTTATGTCATAGTTCACATATCATT
ACCAAATTTAATAGAAAACCAATCCGAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059568-exon-scaffold_329-1575043694:34564..34608 | TCONS_00059568-exon-scaffold_329-1575043694:34564..34608 | Clytia hemisphaerica | exon |
| TCONS_00059568-exon-scaffold_329-1575043694:33536..33757 | TCONS_00059568-exon-scaffold_329-1575043694:33536..33757 | Clytia hemisphaerica | exon |
| TCONS_00059568-exon-scaffold_329-1575043694:30279..31122 | TCONS_00059568-exon-scaffold_329-1575043694:30279..31122 | Clytia hemisphaerica | exon |
| TCONS_00059568-exon-scaffold_329-1510915933:34564..34608 | TCONS_00059568-exon-scaffold_329-1510915933:34564..34608 | Clytia hemisphaerica | exon |
| TCONS_00059568-exon-scaffold_329-1510915933:33536..33757 | TCONS_00059568-exon-scaffold_329-1510915933:33536..33757 | Clytia hemisphaerica | exon |
| TCONS_00059568-exon-scaffold_329-1510915933:30279..31122 | TCONS_00059568-exon-scaffold_329-1510915933:30279..31122 | Clytia hemisphaerica | exon |
| TCONS_00059568-exon-scaffold_329-1491911889:34564..34608 | TCONS_00059568-exon-scaffold_329-1491911889:34564..34608 | Clytia hemisphaerica | exon |
| TCONS_00059568-exon-scaffold_329-1491911889:33536..33757 | TCONS_00059568-exon-scaffold_329-1491911889:33536..33757 | Clytia hemisphaerica | exon |
| TCONS_00059568-exon-scaffold_329-1491911889:30279..31122 | TCONS_00059568-exon-scaffold_329-1491911889:30279..31122 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_329 | supercontig | scaffold_329:30279..34608 - |
Blast
The following BLAST results are available for this feature:
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