TCONS_00059625 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059625
Unique NameTCONS_00059625
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length804

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059625 ID=TCONS_00059625|Name=TCONS_00059625|organism=Clytia hemisphaerica|type=transcript|length=804bp
TCACCTTGCCTCACTAACACACAGTTGATTGTTAGTGTGAAGGATTCGAT
CAGACTTGTAATATTTGAATCTCAAGCACTACTCGCATGCAATGCAGTTG
GGAGGAATGGTAATAGCCTCTCCACCTACGCTGATAGGTAAAAAGAAGTT
TTATAACTTATTTTCAGTGCCCTATATATTCTTCACAAGGGAAATTGGTC
AGAAGTTACGGTATTTTGGAACggatgaaaaatttctaaaaatacaCGAG
CAAACTACGTTATAAGAGAAATGGTTCTCATTTATCGTTCTTTCTTACGC
ACGTTATTCGGTCAATCAAAAGTATATTTTCCATATTGAAGCTTTGAACA
AGGCTAAAGGAAGTAAAAATGTTGGCTTCACTGTTTGAAATTCTTTGAAT
ATTTCCTCCCTACACAGTACTCATCACCACGTCACATCAGGGAATCAAAT
AGTTTCAGCTTCATGGTTTCAGATTGCCTAATATTATGGTTCCAATAGTT
CAAATGTCATCTTGTTGTTATTTCTGGAATGTAAcataatttcaatcaat
ttaacTAATTCAATTCTTATTGCCATACAAACACAAAAACTAGCAAGAAC
AAATTCAGCTAAATTGAAgggaaaaataatcaaaactcaATCAAATCTAA
ATATGCATTTCCTGTGTTTTTAGTGTGTGAAAAATCGACTTCATTACACT
AATTATAAATTACCTCATTAATGTTGCCAAACTCATTACATAACTAGCAA
CAAGACCTGTCTACGGTAGACTGACTTTAACGACTTTCCACATCTCGAAA
GCAC
Run BLAST on NCBI

transcript from alignment at scaffold_329:89965..90768

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059625 ID=TCONS_00059625|Name=TCONS_00059625|organism=Clytia hemisphaerica|type=transcript|length=804bp|location=Sequence derived from alignment at scaffold_329:89965..90768 (Clytia hemisphaerica)
GTGCTTTCGAGATGTGGAAAGTCGTTAAAGTCAGTCTACCGTAGACAGGT
CTTGTTGCTAGTTATGTAATGAGTTTGGCAACATTAATGAGGTAATTTAT
AATTAGTGTAATGAAGTCGATTTTTCACACACTAAAAACACAGGAAATGC
ATATTTAGATTTGATtgagttttgattatttttcccTTCAATTTAGCTGA
ATTTGTTCTTGCTAGTTTTTGTGTTTGTATGGCAATAAGAATTGAATTAg
ttaaattgattgaaattatgTTACATTCCAGAAATAACAACAAGATGACA
TTTGAACTATTGGAACCATAATATTAGGCAATCTGAAACCATGAAGCTGA
AACTATTTGATTCCCTGATGTGACGTGGTGATGAGTACTGTGTAGGGAGG
AAATATTCAAAGAATTTCAAACAGTGAAGCCAACATTTTTACTTCCTTTA
GCCTTGTTCAAAGCTTCAATATGGAAAATATACTTTTGATTGACCGAATA
ACGTGCGTAAGAAAGAACGATAAATGAGAACCATTTCTCTTATAACGTAG
TTTGCTCGtgtatttttagaaatttttcatccGTTCCAAAATACCGTAAC
TTCTGACCAATTTCCCTTGTGAAGAATATATAGGGCACTGAAAATAAGTT
ATAAAACTTCTTTTTACCTATCAGCGTAGGTGGAGAGGCTATTACCATTC
CTCCCAACTGCATTGCATGCGAGTAGTGCTTGAGATTCAAATATTACAAG
TCTGATCGAATCCTTCACACTAACAATCAACTGTGTGTTAGTGAGGCAAG
GTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037505XLOC_037505Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059625-exon-scaffold_329-1491911889:89965..90768TCONS_00059625-exon-scaffold_329-1491911889:89965..90768Clytia hemisphaericaexon
TCONS_00059625-exon-scaffold_329-1510915933:89965..90768TCONS_00059625-exon-scaffold_329-1510915933:89965..90768Clytia hemisphaericaexon
TCONS_00059625-exon-scaffold_329-1575043694:89965..90768TCONS_00059625-exon-scaffold_329-1575043694:89965..90768Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_329supercontigscaffold_329:89965..90768 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.0635408	0.153318	0.0717674	0	0	0	0	0	0	0	0.0363347	0	0	0	0	0.1153	0.168719	0.0683665	0	0.0640183	0	0	0	0	0.0674277
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059625 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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