TCONS_00059757 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059757
Unique NameTCONS_00059757
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1882

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059757 ID=TCONS_00059757|Name=TCONS_00059757|organism=Clytia hemisphaerica|type=transcript|length=1882bp
aaaagaatcaacaagccatcaacatcgataaattacacacatttcctcat
aAACTTTTAagattatctgccattatgactttcttgaagcggttccgaaa
ttaaccaatcgggttaggtatcggaattcctatgggagttcttttccgag
atttgtaaaatagcttagtcagcaaaaaaacttttcccggaggtttgagg
aataaacagaactgttatcatttgttttttatttaaccatatatttaaat
ttgcgctcaaaaacacttaaataaataagttaataatatttaATATACTa
cttgtatctctcagaaaataaacacttacagaacgacatagtttatcatt
tggaatacccccgtgttTGGNATTCCTGGCAAAAAAGAATGGCGTGTTTT
CAATCGCAAtggaaaagaaattgaagaatttACTGAAGAATTAGCTCAAT
CTACCAACAGTATCAAAGCAACAATGTTCCCCCCTTCAAAGAAAGTTGCT
GATGATATCAATTTGGAAAGGTGTATGCGAATCTACCCACACTTGCAGAA
TACCGGTGGTTTCTTTATTGCTgttttggaaaagaaaaatgatcttCCCT
GGCAAAAGAGCAAACGCGTTTGGAAAAGCCTACCTTGGGATGAATGTAAC
ACCAAAGAGTCAAAACTTGATGAATCAGAGGCTAAATCAACTGAACAGGT
TGCCGAAAATACAGAGGAAACAATAACTGTTGAAGCCAGCGAGGATGAGA
ATCGTGGGGAAGAAACTGCCAGTGATGACGAGCCAGCATCAAAACAACCT
TGCATTGATGAGGAATCTCTCAATAAACCTGATGAATCTCTCAATAAGGA
TGGTGAATCTCAACCGACTAAAGTAAAAAGAGGGGCAATCAAAGAAGATC
CTTATATCTTTCTTGATGACTCTGACAAAGATCTCTCTGATATTCGAAAA
TTTTATGGACTTTCCCCTGAATTACCTTCCAAACAATTTCTTGTGAGGAG
CACTGGTGCAATTAAAAAGAGACATATTTATCTTGTGTCGGAAAAAGTTC
ATCAAGTAATGagtgaaaataaacacttaaaaATTATCAACACTGGTGTA
AAAATAGTCACCCGTTCACCATTTAGAGCAGGTCAAGCAGAACATGGTGT
AGAGTTTAGACTTGTTCAGGATGGTCTTCAACTtgttgaaaagtttttga
aaaatagaattgTACCTATTCGATCTGGTGATCTTGTTAAtctgatttca
aattttgaagccaAAACAGCAGGATTTGATCTGGAAACACAAGCTACCAT
GGAGAAGATTGATATGGGTTGTGTGGTTTGGCATTTGGATACTTCAAAGA
CAAAGGAAGGTGAGATATCGTTGTCAAGCGACCTTTTCCTGTGTGGTCAC
ATGGGGAGAAATGCTGTCCAAGTCATGTTGAATAAGGAGGACCGAAGGCA
CTACCTTAGACTGCTTGGTGTTCCAATACCAGAGGAATTGGGAAGGGTTG
TCAAGGGTCCAAGTTGGGGAGACCAGCCagccaaagaaaatcaacaggGC
GAAAACACTGATGAAAAACCAAAGGATGTGCTTGAAGAACAAAAAGCTCC
AGCTGAAGTGGCTCTATGATTACCATTGTAATTTTATTACCTgcctaatt
tttaaaatttaacaaTTTTACTAGTTTTTAAAAGATTCTTTTAATCAAAG
GACCAGTTATTATAATTTGATCTTTCAATAATTTGTGTGTATTTGATTAG
ACCATGAAaggatttgttttgtttttgttctttgCTTTAGCAACCTTAAA
CTAGACTGTATGACAAGAGAATCCTGTTAATCTATCAAAGTTTTTTCATT
TAACTTTTGCATAATTCGCCAAAGGAAATGCT
Run BLAST on NCBI

protein sequence of TCONS_00059757-protein

>TCONS_00059757-protein ID=TCONS_00059757-protein|Name=TCONS_00059757-protein|organism=Clytia hemisphaerica|type=polypeptide|length=381bp
MFPPSKKVADDINLERCMRIYPHLQNTGGFFIAVLEKKNDLPWQKSKRVW
KSLPWDECNTKESKLDESEAKSTEQVAENTEETITVEASEDENRGEETAS
DDEPASKQPCIDEESLNKPDESLNKDGESQPTKVKRGAIKEDPYIFLDDS
DKDLSDIRKFYGLSPELPSKQFLVRSTGAIKKRHIYLVSEKVHQVMSENK
HLKIINTGVKIVTRSPFRAGQAEHGVEFRLVQDGLQLVEKFLKNRIVPIR
SGDLVNLISNFEAKTAGFDLETQATMEKIDMGCVVWHLDTSKTKEGEISL
SSDLFLCGHMGRNAVQVMLNKEDRRHYLRLLGVPIPEELGRVVKGPSWGD
QPAKENQQGENTDEKPKDVLEEQKAPAEVAL
Run BLAST on NCBI

transcript from alignment at scaffold_330:53081..54962

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059757 ID=TCONS_00059757|Name=TCONS_00059757|organism=Clytia hemisphaerica|type=transcript|length=1882bp|location=Sequence derived from alignment at scaffold_330:53081..54962 (Clytia hemisphaerica)
AGCATTTCCTTTGGCGAATTATGCAAAAGTTAAATGAAAAAACTTTGATA
GATTAACAGGATTCTCTTGTCATACAGTCTAGTTTAAGGTTGCTAAAGca
aagaacaaaaacaaaacaaatcctTTCATGGTCTAATCAAATACACACAA
ATTATTGAAAGATCAAATTATAATAACTGGTCCTTTGATTAAAAGAATCT
TTTAAAAACTAGTAAAAttgttaaattttaaaaattaggcAGGTAATAAA
ATTACAATGGTAATCATAGAGCCACTTCAGCTGGAGCTTTTTGTTCTTCA
AGCACATCCTTTGGTTTTTCATCAGTGTTTTCGCcctgttgattttcttt
ggctGGCTGGTCTCCCCAACTTGGACCCTTGACAACCCTTCCCAATTCCT
CTGGTATTGGAACACCAAGCAGTCTAAGGTAGTGCCTTCGGTCCTCCTTA
TTCAACATGACTTGGACAGCATTTCTCCCCATGTGACCACACAGGAAAAG
GTCGCTTGACAACGATATCTCACCTTCCTTTGTCTTTGAAGTATCCAAAT
GCCAAACCACACAACCCATATCAATCTTCTCCATGGTAGCTTGTGTTTCC
AGATCAAATCCTGCTGTTTtggcttcaaaatttgaaatcagaTTAACAAG
ATCACCAGATCGAATAGGTAcaattctatttttcaaaaacttttcaacaA
GTTGAAGACCATCCTGAACAAGTCTAAACTCTACACCATGTTCTGCTTGA
CCTGCTCTAAATGGTGAACGGGTGACTATTTTTACACCAGTGTTGATAAT
ttttaagtgtttattttcactCATTACTTGATGAACTTTTTCCGACACAA
GATAAATATGTCTCTTTTTAATTGCACCAGTGCTCCTCACAAGAAATTGT
TTGGAAGGTAATTCAGGGGAAAGTCCATAAAATTTTCGAATATCAGAGAG
ATCTTTGTCAGAGTCATCAAGAAAGATATAAGGATCTTCTTTGATTGCCC
CTCTTTTTACTTTAGTCGGTTGAGATTCACCATCCTTATTGAGAGATTCA
TCAGGTTTATTGAGAGATTCCTCATCAATGCAAGGTTGTTTTGATGCTGG
CTCGTCATCACTGGCAGTTTCTTCCCCACGATTCTCATCCTCGCTGGCTT
CAACAGTTATTGTTTCCTCTGTATTTTCGGCAACCTGTTCAGTTGATTTA
GCCTCTGATTCATCAAGTTTTGACTCTTTGGTGTTACATTCATCCCAAGG
TAGGCTTTTCCAAACGCGTTTGCTCTTTTGCCAGGGaagatcatttttct
tttccaaaacAGCAATAAAGAAACCACCGGTATTCTGCAAGTGTGGGTAG
ATTCGCATACACCTTTCCAAATTGATATCATCAGCAACTTTCTTTGAAGG
GGGGAACATTGTTGCTTTGATACTGTTGGTAGATTGAGCTAATTCTTCAG
TaaattcttcaatttcttttccaTTGCGATTGAAAACACGCCATTCTTTT
TTGCCAGGAATNCCAaacacgggggtattccaaatgataaactatgtcgt
tctgtaagtgtttattttctgagagatacaagtAGTATATtaaatattat
taacttatttatttaagtgtttttgagcgcaaatttaaatatatggttaa
ataaaaaacaaatgataacagttctgtttattcctcaaacctccgggaaa
agtttttttgctgactaagctattttacaaatctcggaaaagaactccca
taggaattccgatacctaacccgattggttaatttcggaaccgcttcaag
aaagtcataatggcagataatctTAAAAGTTtatgaggaaatgtgtgtaa
tttatcgatgttgatggcttgttgattctttt

Coding sequence (CDS) from alignment at scaffold_330:53081..54962

>TCONS_00059757 ID=TCONS_00059757|Name=TCONS_00059757|organism=Clytia hemisphaerica|type=CDS|length=1146bp|location=Sequence derived from alignment at scaffold_330:53081..54962 (Clytia hemisphaerica)
TCATAGAGCCACTTCAGCTGGAGCTTTTTGTTCTTCAAGCACATCCTTTG
GTTTTTCATCAGTGTTTTCGCcctgttgattttctttggctGGCTGGTCT
CCCCAACTTGGACCCTTGACAACCCTTCCCAATTCCTCTGGTATTGGAAC
ACCAAGCAGTCTAAGGTAGTGCCTTCGGTCCTCCTTATTCAACATGACTT
GGACAGCATTTCTCCCCATGTGACCACACAGGAAAAGGTCGCTTGACAAC
GATATCTCACCTTCCTTTGTCTTTGAAGTATCCAAATGCCAAACCACACA
ACCCATATCAATCTTCTCCATGGTAGCTTGTGTTTCCAGATCAAATCCTG
CTGTTTtggcttcaaaatttgaaatcagaTTAACAAGATCACCAGATCGA
ATAGGTAcaattctatttttcaaaaacttttcaacaAGTTGAAGACCATC
CTGAACAAGTCTAAACTCTACACCATGTTCTGCTTGACCTGCTCTAAATG
GTGAACGGGTGACTATTTTTACACCAGTGTTGATAATttttaagtgttta
ttttcactCATTACTTGATGAACTTTTTCCGACACAAGATAAATATGTCT
CTTTTTAATTGCACCAGTGCTCCTCACAAGAAATTGTTTGGAAGGTAATT
CAGGGGAAAGTCCATAAAATTTTCGAATATCAGAGAGATCTTTGTCAGAG
TCATCAAGAAAGATATAAGGATCTTCTTTGATTGCCCCTCTTTTTACTTT
AGTCGGTTGAGATTCACCATCCTTATTGAGAGATTCATCAGGTTTATTGA
GAGATTCCTCATCAATGCAAGGTTGTTTTGATGCTGGCTCGTCATCACTG
GCAGTTTCTTCCCCACGATTCTCATCCTCGCTGGCTTCAACAGTTATTGT
TTCCTCTGTATTTTCGGCAACCTGTTCAGTTGATTTAGCCTCTGATTCAT
CAAGTTTTGACTCTTTGGTGTTACATTCATCCCAAGGTAGGCTTTTCCAA
ACGCGTTTGCTCTTTTGCCAGGGaagatcatttttcttttccaaaacAGC
AATAAAGAAACCACCGGTATTCTGCAAGTGTGGGTAGATTCGCATACACC
TTTCCAAATTGATATCATCAGCAACTTTCTTTGAAGGGGGGAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037586XLOC_037586Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059757-proteinTCONS_00059757-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059757-exon-scaffold_330-1491911889:53081..54962TCONS_00059757-exon-scaffold_330-1491911889:53081..54962Clytia hemisphaericaexon
TCONS_00059757-exon-scaffold_330-1510915933:53081..54962TCONS_00059757-exon-scaffold_330-1510915933:53081..54962Clytia hemisphaericaexon
TCONS_00059757-exon-scaffold_330-1575043694:53081..54962TCONS_00059757-exon-scaffold_330-1575043694:53081..54962Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_330supercontigscaffold_330:53081..54962 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.1504	13.2035	12.7397	12.75	116.018	88.3137	51.0291	55.6741	28.1117	36.7524	20.7111	17.2179	17.5245	18.9649	21.4759	19.55	30.8464	21.9796	4.03511	5.40682	28.5992	28.0276	76.8094	64.9228	23.7835	29.1966	11.6128	11.1842	58.0845	67.8519
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001678MeTrfase_RsmB/NOP2
Vocabulary: Molecular Function
TermDefinition
GO:0008168methyltransferase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008168 methyltransferase activity
Blast
[Close]
BLAST of TCONS_00059757 vs. Swiss-Prot (Human)
Match: NSUN2 (tRNA (cytosine(34)-C(5))-methyltransferase OS=Homo sapiens GN=NSUN2 PE=1 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 3.822e-44
Identity = 129/423 (30.50%), Postives = 201/423 (47.52%), Query Frame = 3 
Query:  372 IPGKKEWRVFNRNGKEIEEFTEELAQSTNSIKATMFPP-SKKVADDINLERCMRIYPHLQNTGGFFIAVLEKKNDLPWQK--SKRVWKSLPWDECNTKESKLDESEAKSTEQVA------ENTEETITVEASED-ENRGEETASDDEPASKQPCIDEESLNKPDESLNKDGESQPT---KVKRGAIKEDPYIFLDDSDKDLSDIRKFYGLSPELPSKQFLVRSTGAIKKRHIYLVSEKVHQVMSENKH-LKIINTGVKIVTRSPFRAGQAEHGVEFRLVQDGLQLVEKFLKNRIVPIRSGDLVNLISNFEAKTAGFDLETQATMEKIDMGCVVWHLDTSKTKEGEISLSSDLFLCGHMGRNAVQVMLNKEDRRHYLRLLGVPIPEELGRVVKGPSWGDQPAKENQQGENTDEKPKDVLEEQKA 1598
            +PG  +W+V  ++G+   ++          I+ TMFPP   +    ++LERC+RI PH QNTGGFF+AVL KK+ +PW K   K   KS    E +T+ S  D +E K T+           T +T    A+ED EN G +                           KDG   P    K+K    KEDP++F+ + D     I KFY L P  P    L R+T   KKR +Y+VS+++  V+  N   +K+INTG+K+  R+   +G+ E    FRL Q+G+  +  F+ +RI+ +   D+  L++           ET +  + +  G +V  L          +L   + LCG  G+ +++  + K +R HYLR++G+   E LG   K     +     N+   +T +   DV E Q+A
Sbjct:  358 MPGITQWKVMTKDGQWFTDWDAVPHSRHTQIRPTMFPPKDPEKLQAMHLERCLRILPHHQNTGGFFVAVLVKKSSMPWNKRQPKLQGKSAETRE-STQLSPADLTEGKPTDPSKLESPSFTGTGDTEIAHATEDLENNGSK---------------------------KDGVCGPPPSKKMKLFGFKEDPFVFIPEDDPLFPPIEKFYALDPSFPRMNLLTRTTEG-KKRQLYMVSKELRNVLLNNSEKMKVINTGIKVWCRN--NSGE-EFDCAFRLAQEGIYTLYPFINSRIITVSMEDVKILLTQENPFFRKLSSETYSQAKDLAKGSIV--LKYEPDSANPDALQCPIVLCGWRGKASIRTFVPKNERLHYLRMMGL---EVLGEKKK-----EGVILTNESAASTGQPDNDVTEGQRA 738
The following BLAST results are available for this feature:
BLAST of TCONS_00059757 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NSUN23.822e-4430.50tRNA (cytosine(34)-C(5))-methyltransferase OS=Homo... [more]
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