|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059828 ID=TCONS_00059828|Name=TCONS_00059828|organism=Clytia hemisphaerica|type=transcript|length=1739bp
AAAATTCctttggtaaaaatattttttctttgaaaacttaaatatttgga
tgggtcacaggcaagaaaaaacaaaaatttatttattgataaattttttt
tctttaaagaaaaactttttgttgtCTTTGAGATTtcttaaaacattcaa
aattcagatttcaaaaagcatttgatttttcaagaatcTTTTTGTAATCT
ATTCTCAACGAGGAGTCATCAAGAATCAACCATCAGACCTTAATTTTTCT
CATCATTcttcaatattatttttttttctgaagccTTTcgtcaaaaaatc
aagaatcaaaAAAAGGGAGCACGAtccgaaaaaagaaaagatgacGAAGA
AAGTTTTCCTGTGGACTGCACCACGTTGCATAAGCACTGCTTTCGAACGT
TGCATCATGGAAATTGAACATTCGAAAATCTTCCATGAGCCCTTCTCTAA
ACCATACCATTTCGGACCAGAAAGAAAAAGCCAACGCTATTTATCTCAAC
CTGTAGACCCTACAGTATCGTACGAGGCTATGAAATCTATTCTCACAAAG
GAATATGACGGattggatttaattttttcaaaagatatggCTTACGCGAT
TGAAGATTGTTATGATATCCTTGCTGATAAAGATTTCAATAATTGGCAGC
ATACGTTTTTAATGAGAAATCCACGTAAGACGGTACCTAGTCTATACAAA
GCCTCTGTCAACAAGACTTTAACTGGATGGGAATGCTTTGATCCTCACGA
AGCAGGATTTGAACAACTACaagatttgtttgattttgtgaAGGAGAATT
TCGATAAACAACCGGTGGTTGTTGACGCAGATGATTTAATGACAGATCCA
GAATCAACAATGAAagCCTATTGTGGAGCCATTGGTATCGAATTCAAAAA
AGACATTCTAGCTTGGGAACCAGGAGAAGTTGAAGGATGGGATACGTGGA
ATGGCTGGCATGAAAACGCCTTAAAAAGTTGTGGATTTTCAAGACAAGAT
CCTGCAAAATTGATGAGATTCGAAGACCTATCAATGTACCCCAAAATTGT
CGAGGATAGTGTAAATCAATGCTTACCTTATTATACAAATCTGTCCAAAT
TCAAATTGAACCCTAATATTATGACAAATTAATCTAAAATCTTCGACACA
GTATTTAACGTTAAGATAACCGAGCGCtttggtttaactcactaaaggTT
GCTGATCGTGTATGTTcacaaaacaatatttttaagtgagttaaaccata
ctGTCTGTTTCTCTTTCAAAATCATTTGACCTTATTTAGTTGAAAAGTGG
GTCACCTGAATTTCCATGGAGAAGAACATATATATGGCAACATAATCCAA
TTTTTGCTcccgttgaaaataatcaaataaacaattctccagccataaaa
aaacatgggaatatcgatTCCCATCGAATTTCAGTCCGTAATTTTTACtc
tcactggctgaaaaaatcctactgggcCTGTGAGAAGCCTGAGAAGATGG
TGCATGACAAATATTCGTATTAAGACTTGTTATTAATTAAAGAAGCGCTG
GACAGGTGAAATTGGTTTATCTTTACCAATTTTAGTATTATTTTCAGTAG
TTTAAAGTATGCATGCACTATATAGAAATTATAAGAAAGATTTGTATTTA
ATATTTAAGTCGTAAAATATATcaagaaaatattatcaaaattaaatACT
AATATGCATGAAGGGTGAATAATGGGAATAATTTTGAAG Run BLAST on NCBI protein sequence of TCONS_00059828-protein >TCONS_00059828-protein ID=TCONS_00059828-protein|Name=TCONS_00059828-protein|organism=Clytia hemisphaerica|type=polypeptide|length=263bp
MTKKVFLWTAPRCISTAFERCIMEIEHSKIFHEPFSKPYHFGPERKSQRY
LSQPVDPTVSYEAMKSILTKEYDGLDLIFSKDMAYAIEDCYDILADKDFN
NWQHTFLMRNPRKTVPSLYKASVNKTLTGWECFDPHEAGFEQLQDLFDFV
KENFDKQPVVVDADDLMTDPESTMKAYCGAIGIEFKKDILAWEPGEVEGW
DTWNGWHENALKSCGFSRQDPAKLMRFEDLSMYPKIVEDSVNQCLPYYTN
LSKFKLNPNIMTN Run BLAST on NCBI transcript from alignment at scaffold_331:721672..724132+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059828 ID=TCONS_00059828|Name=TCONS_00059828|organism=Clytia hemisphaerica|type=transcript|length=2461bp|location=Sequence derived from alignment at scaffold_331:721672..724132+ (Clytia hemisphaerica)
AAAATTCctttggtaaaaatattttttctttgaaaacttaaatatttgga
tgggtcacaggcaagaaaaaacaaaaatttatttattgataaattttttt
tctttaaagaaaaactttttgttgtCTTTGAGATTtcttaaaacattcaa
aattcagatttcaaaaagcatttgatttttcaagaatcTTTTTGTAATCT
ATTCTCAACGAGGAGTCATCAAGAATCAACCATCAGACCTTAATTTTTCT
CATCATTcttcaatattatttttttttctgaagccTTTcgtcaaaaaatc
aagaatcaaaAAAAGGGTAAGTTTTTTATACTTTGAGGTCTTTGAGAAAT
GTTATTATTTATACATATATACTTTTTTGAGCACAGTTCTCGTTGTGATC
AGCGCACGCGCACACACCAAGAAAAGAATTGACTTTAAATTTTTGCATTG
TATCCGGGCTTGGTCAAAAACGTGGCGGAACTCCTAGATCCAGACCTTCC
GGTATACAACCGTAATCTTTGGACAGTAGCACTTACTAGGTAAAGGGGCA
AAACTAAACCAAAGGGAGATGGATGTTTAACAACCCCCTGAGACTGATGG
AATTCTTTGTATTACTGAAGAATAGCTAGTAAGTTTTATAACTTAAAAAC
TTCGTAGTAAATCTCAGTCTTATTATTTTAGGAGCACGAtccgaaaaaag
aaaagatgacGAAGAAAGTTTTCCTGTGGACTGCACCACGTTGCATAAGC
ACTGCTTTCGAACGTTGCATCATGGAAATTGAACATTCGAAAATCTTCCA
TGAGCCCTTCTCTAAACCATACCATTTCGGACCAGAAAGAAAAAGCCAAC
GCTATTTATCTCAACCTGTAGACCCTACAGTATCGTACGAGGCTATGAAA
TCTATTCTCACAAAGGAATATGACGGattggatttaattttttcaaaaga
tatggCTTACGCGATTGAAGATTGTTATGATATCCTTGCTGATAAAGATT
TCAATAATTGGCAGCATACGTTTTTAATGAGAAATCCACGTAAGACGGTA
CCTAGTCTATACAAAGCCTCTGTCAACAAGACTTTAACTGGATGGGAATG
CTTTGATCCTCACGAAGCAGGATTTGAACAACTACaagatttgtttgatt
ttgtgaAGGAGAATTTCGATAAACAACCGGTGGTTGTTGACGCAGATGAT
TTAATGACAGATCCAGAATCAACAATGAAaggtatacgtttttttataag
aacaaactatataaggcttcgatgggcaaaatgttaagaacaagttgaga
acactTTAAGACCCAAAacatttcttaggaaaatggtcaaaaatattata
taaGTTTATAAGCATACTCAGTTTTTGgaacctaaacaatggctctattg
tttaagaacattataataCTCTGAATACTAAGCTTAATGCGAGCCTGGTA
TAGGGGAAGGcacttgcttattaaaaaagcaTGTATTTCAAAAGAATCCT
TGTTCCAATAAGAATGCCCTCACTTTTTAGCCTATTGTGGAGCCATTGGT
ATCGAATTCAAAAAAGACATTCTAGCTTGGGAACCAGGAGAAGTTGAAGG
TTGGGATACGTGGAATGGCTGGCATGAAAACGCCTTAAAAAGTTGTGGNA
GTTGAAGGATGGGATACGTGGAATGGCTGGCATGAAAACGCCTTAAAAAG
TTGTGGATTTTCAAGACAAGATCCTGCAAAATTGATGAGATTCGAAGACC
TATCAATGTACCCCAAAATTGTCGAGGATAGTGTAAATCAATGCTTACCT
TATTATACAAATCTGTCCAAATTCAAATTGAACCCTAATATTATGACAAA
TTAATCTAAAATCTTCGACACAGTATTTAACGTTAAGATAACCGAGCGCt
ttggtttaactcactaaaggTTGCTGATCGTGTATGTTcacaaaacaata
tttttaagtgagttaaaccatactGTCTGTTTCTCTTTCAAAATCATTTG
ACCTTATTTAGTTGAAAAGTGGGTCACCTGAATTTCCATGGAGAAGAACA
TATATATGGCAACATAATCCAATTTTTGCTcccgttgaaaataatcaaat
aaacaattctccagccataaaaaaacatgggaatatcgatTCCCATCGAA
TTTCAGTCCGTAATTTTTACtctcactggctgaaaaaatcctactgggcC
TGTGAGAAGCCTGAGAAGATGGTGCATGACAAATATTCGTATTAAGACTT
GTTATTAATTAAAGAAGCGCTGGACAGGTGAAATTGGTTTATCTTTACCA
ATTTTAGTATTATTTTCAGTAGTTTAAAGTATGCATGCACTATATAGAAA
TTATAAGAAAGATTTGTATTTAATATTTAAGTCGTAAAATATATcaagaa
aatattatcaaaattaaatACTAATATGCATGAAGGGTGAATAATGGGAA
TAATTTTGAAG Coding sequence (CDS) from alignment at scaffold_331:721672..724132+ >TCONS_00059828 ID=TCONS_00059828|Name=TCONS_00059828|organism=Clytia hemisphaerica|type=CDS|length=2376bp|location=Sequence derived from alignment at scaffold_331:721672..724132+ (Clytia hemisphaerica)
atgacGAAGAAAGTTTTCCTGTGGACTGCACCACGTTGCATAAGCACTGC
TTTCGAACGTTGCATCATGGAAATTGAACATTCGAAAATCTTCCATGAGC
CCTTCTCTAAACCATACCATTTCGGACCAGAAAGAAAAAGCCAACGCTAT
TTATCTCAACCTGTAGACCCTACAGTATCGTACGAGGCTATGAAATCTAT
TCTCACAAAGGAATATGACGGattggatttaattttttcaaaagatatgg
CTTACGCGATTGAAGATTGTTATGATATCCTTGCTGATAAAGATTTCAAT
AATTGGCAGCATACGTTTTTAATGAGAAATCCACGTAAGACGGTACCTAG
TCTATACAAAGCCTCTGTCAACAAGACTTTAACTGGATGGGAATGCTTTG
ATCCTCACGAAGCAGGATTTGAACAACTACaagatttgtttgattttgtg
aAGGAGAATTTCGATAAACAACCGGTGGTTGTTGACGCAGATGATTTAAT
GACAGATCCAGAATCAACAATGAAagCCTATTGTGGAGCCATTGGTATCG
AATTCAAAAAAGACATTCTAGCTTGGGAACCAGGAGAAGTTGAAGGATGG
GATACGTGGAATGGCTGGCATGAAAACGCCTTAAAAAGTTGTGGATTTTC
AAGACAAGATCCTGCAAAATTGATGAGATTCGAAGACCTATCAATGTACC
CCAAAATTGTCGAGGATAGTGTAAATCAATGCTTACCTTATTATACAAAT
CTGTCCAAATTCAAATTGAACCCTAATATTATGACAAATTAAatgacGAA
GAAAGTTTTCCTGTGGACTGCACCACGTTGCATAAGCACTGCTTTCGAAC
GTTGCATCATGGAAATTGAACATTCGAAAATCTTCCATGAGCCCTTCTCT
AAACCATACCATTTCGGACCAGAAAGAAAAAGCCAACGCTATTTATCTCA
ACCTGTAGACCCTACAGTATCGTACGAGGCTATGAAATCTATTCTCACAA
AGGAATATGACGGattggatttaattttttcaaaagatatggCTTACGCG
ATTGAAGATTGTTATGATATCCTTGCTGATAAAGATTTCAATAATTGGCA
GCATACGTTTTTAATGAGAAATCCACGTAAGACGGTACCTAGTCTATACA
AAGCCTCTGTCAACAAGACTTTAACTGGATGGGAATGCTTTGATCCTCAC
GAAGCAGGATTTGAACAACTACaagatttgtttgattttgtgaAGGAGAA
TTTCGATAAACAACCGGTGGTTGTTGACGCAGATGATTTAATGACAGATC
CAGAATCAACAATGAAagCCTATTGTGGAGCCATTGGTATCGAATTCAAA
AAAGACATTCTAGCTTGGGAACCAGGAGAAGTTGAAGGATGGGATACGTG
GAATGGCTGGCATGAAAACGCCTTAAAAAGTTGTGGATTTTCAAGACAAG
ATCCTGCAAAATTGATGAGATTCGAAGACCTATCAATGTACCCCAAAATT
GTCGAGGATAGTGTAAATCAATGCTTACCTTATTATACAAATCTGTCCAA
ATTCAAATTGAACCCTAATATTATGACAAATTAAatgacGAAGAAAGTTT
TCCTGTGGACTGCACCACGTTGCATAAGCACTGCTTTCGAACGTTGCATC
ATGGAAATTGAACATTCGAAAATCTTCCATGAGCCCTTCTCTAAACCATA
CCATTTCGGACCAGAAAGAAAAAGCCAACGCTATTTATCTCAACCTGTAG
ACCCTACAGTATCGTACGAGGCTATGAAATCTATTCTCACAAAGGAATAT
GACGGattggatttaattttttcaaaagatatggCTTACGCGATTGAAGA
TTGTTATGATATCCTTGCTGATAAAGATTTCAATAATTGGCAGCATACGT
TTTTAATGAGAAATCCACGTAAGACGGTACCTAGTCTATACAAAGCCTCT
GTCAACAAGACTTTAACTGGATGGGAATGCTTTGATCCTCACGAAGCAGG
ATTTGAACAACTACaagatttgtttgattttgtgaAGGAGAATTTCGATA
AACAACCGGTGGTTGTTGACGCAGATGATTTAATGACAGATCCAGAATCA
ACAATGAAagCCTATTGTGGAGCCATTGGTATCGAATTCAAAAAAGACAT
TCTAGCTTGGGAACCAGGAGAAGTTGAAGGATGGGATACGTGGAATGGCT
GGCATGAAAACGCCTTAAAAAGTTGTGGATTTTCAAGACAAGATCCTGCA
AAATTGATGAGATTCGAAGACCTATCAATGTACCCCAAAATTGTCGAGGA
TAGTGTAAATCAATGCTTACCTTATTATACAAATCTGTCCAAATTCAAAT
TGAACCCTAATATTATGACAAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059828-exon-scaffold_331-1491911889:721672..721987 | TCONS_00059828-exon-scaffold_331-1491911889:721672..721987 | Clytia hemisphaerica | exon |
| TCONS_00059828-exon-scaffold_331-1510915933:721672..721987 | TCONS_00059828-exon-scaffold_331-1510915933:721672..721987 | Clytia hemisphaerica | exon |
| TCONS_00059828-exon-scaffold_331-1575043694:721672..721987 | TCONS_00059828-exon-scaffold_331-1575043694:721672..721987 | Clytia hemisphaerica | exon |
| TCONS_00059828-exon-scaffold_331-1491911889:722353..722902 | TCONS_00059828-exon-scaffold_331-1491911889:722353..722902 | Clytia hemisphaerica | exon |
| TCONS_00059828-exon-scaffold_331-1510915933:722353..722902 | TCONS_00059828-exon-scaffold_331-1510915933:722353..722902 | Clytia hemisphaerica | exon |
| TCONS_00059828-exon-scaffold_331-1575043694:722353..722902 | TCONS_00059828-exon-scaffold_331-1575043694:722353..722902 | Clytia hemisphaerica | exon |
| TCONS_00059828-exon-scaffold_331-1491911889:723202..723270 | TCONS_00059828-exon-scaffold_331-1491911889:723202..723270 | Clytia hemisphaerica | exon |
| TCONS_00059828-exon-scaffold_331-1510915933:723202..723270 | TCONS_00059828-exon-scaffold_331-1510915933:723202..723270 | Clytia hemisphaerica | exon |
| TCONS_00059828-exon-scaffold_331-1575043694:723202..723270 | TCONS_00059828-exon-scaffold_331-1575043694:723202..723270 | Clytia hemisphaerica | exon |
| TCONS_00059828-exon-scaffold_331-1491911889:723329..724132 | TCONS_00059828-exon-scaffold_331-1491911889:723329..724132 | Clytia hemisphaerica | exon |
| TCONS_00059828-exon-scaffold_331-1510915933:723329..724132 | TCONS_00059828-exon-scaffold_331-1510915933:723329..724132 | Clytia hemisphaerica | exon |
| TCONS_00059828-exon-scaffold_331-1575043694:723329..724132 | TCONS_00059828-exon-scaffold_331-1575043694:723329..724132 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_331 | supercontig | scaffold_331:721672..724132 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR027417 | P-loop_NTPase |
Blast
The following BLAST results are available for this feature:
|
