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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059834 ID=TCONS_00059834|Name=TCONS_00059834|organism=Clytia hemisphaerica|type=transcript|length=594bp
CTATATGCTgtttaaattcttttatatatatttttttatatacggTGGAG
CGTTGTTactgagaatttttttactcCTATGAACTCAAACAAACCTCTTG
CGAAAGAAAGAGCCAAAATAGAAAGGAACATGGcatctcaaaattttcca
aaaataaaaactcttcaaaaatggaaaaacgatTTTTCATGGTTAAATGT
AAACCATTCTCAGGGAATGACATGTAAACTCTGTGTCAAATGGGTAAAGA
CAATAGAATCGAGCAAAAATTATTCGGTAGCATTTGTGAAAGGATCTAAG
AATTACAGAAGATCTGCTGTAGCTGAACATGAAAAGACAACACAGCATGA
ACAGAGTAAAGAACTTGAAGAAGAGGAAAGATGCAAAGCACCAGGGGCAG
TTTACAGAAAAACTGTAACTCAGaacaCTCCAGTGGGTGCACCAATTGTC
AAAGGGTTAAAAAAGATGTCCAACACTGAAAAAGAAGGACTTTTAAAACT
ATTCCAAATCGCATATTTGAATGCATACAAAGGCAGACCTTACGTTGATT
TTACAGATTGGGTAGAATGGGCTGAGTTAAATGGTATTAAATTC Run BLAST on NCBI protein sequence of TCONS_00059834-protein >TCONS_00059834-protein ID=TCONS_00059834-protein|Name=TCONS_00059834-protein|organism=Clytia hemisphaerica|type=polypeptide|length=172bp
MNSNKPLAKERAKIERNMASQNFPKIKTLQKWKNDFSWLNVNHSQGMTCK
LCVKWVKTIESSKNYSVAFVKGSKNYRRSAVAEHEKTTQHEQSKELEEEE
RCKAPGAVYRKTVTQNTPVGAPIVKGLKKMSNTEKEGLLKLFQIAYLNAY
KGRPYVDFTDWVEWAELNGIKF Run BLAST on NCBI transcript from alignment at scaffold_331:833441..836351+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059834 ID=TCONS_00059834|Name=TCONS_00059834|organism=Clytia hemisphaerica|type=transcript|length=2911bp|location=Sequence derived from alignment at scaffold_331:833441..836351+ (Clytia hemisphaerica)
CTATATGCTgtttaaattcttttatatatatttttttatatacggTGGAG
CGTTGTTactgagaatttttttactcCTATGAACTCAAACAAACCTCTTG
CGAAAGAAAGAGCCAAAATAGAAAGGAACATGGcatctcaaaattttcca
aaaataaaaactcttcaaaaatggaaaaacgatTTTTCATGGTTAAATGT
AAACCATTCTCAGGGAATGACATGTAAACTCTGTGTCAAATGGGTAAAGA
CAATAGAATCGAGCAAAAATTATTCGGTAGCATTTGTGAAAGGATCTAAG
AATTACAGAAGATCTGCTGTAGCTGAACATGAAAAGACAACACAGCATGA
ACAGAGTAAAGAACTTGAAGAAGAGGAAAGATGCAAAGCACCAGGGGGTG
tcaatcgaaaaattcgattgtcgaatcgATCGAAGTGATTGTCGAATCGA
TCGAAGTCGATTgaagatttacattttttttgctcctTATGAACGCCCCT
CGACATGGCccaagaattctcgggccaaaacttttattggaattaacttt
tattggaatatggcccgagctggcccgagaattctcgggccgtGTTCGag
ccacacgcgggccacgcacgggccacactcgggccacactcgggccaatt
tttgaaaacatgatttaaacaggcgtgtaatttcaggactgaattttttN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtcatataaatatta
aacgtcttatttggtatgaaaacatagttataaaatATACTTAGgatgga
aatatttgctagtaaactggtcctggttttaaactgaagagtgtccacgg
gaagctcgtaaagtttttttgagcgatataatcataacagacaaatctta
ttttgtactattttgtttgactggacatgctgaatcaatttaacatttaa
catggcccgaacatggcccgaatgactcgggtcatgttcgggccaaaaga
attgatagggtctctcagcccgaacatggcccgaagaggcccgagaattc
tcgggcctcttcgggccatgttcgggccaaaagaattgatagggtctctc
agcccgaacatggcccgaagaggcccgagaattctcgggccatgtcgagg
gtcgtccttatgatcgacttcgattgacttcgatcgacTACGATTGACTT
TGATCGACTACGATTGACATCGATCGACTAcgattgacttcgatcgacta
cgattgacttcgatcgactacgattgacttcgatcgacttcgattgactt
cgatcgacTTCGATAACCGTCGTGACTTGCTTGCAGCAAATAATTTACCC
ACCTTGTGTCTCCTTTGTGTCTTAAGGTCGGTCTCCACTAAGCGCGCGCT
gcgatagctcttctttgagcAAGGCCATCATcatatgttccgttcgcgtc
ataaaacatcttcaaattcAGTCGGTCGGTAATATATTTCGTTGGGTTTT
TAAGATTTAGTAAATCCCGATAtatcaagtcggcaatcaacaaaatcttt
tgCCGCTATCTTTGATTGGCCAAACTATCCACAGTGAAATGTGCGCGCAC
ATGCGTTAACCTCAAAAgcggaccttattttcggcctGCGGGGGTATCGG
CCCTACTGCGTCGCTGAATTTCGATTTGAAAATGTCAATAAGAAAATCTT
GAACGGGACTCAATGTGAGTTCAGTAAACAAAAACTTATAGCGATGATGA
TTCAAAGATACGAAGTGCTTGGCTATCAAAAAATTATTCCGACATTTTTC
CGACTTGTCCGACTCgggatttatgttttgaaagtGAGTCGGGGGACGCA
AACGGAACATATTATTGATGATGGCCCAAAGCTTCCACACTATTGATCAA
AAgcaaaatgaagcaatttcattgGCGTGATCTGACGTAACGATCACTCG
CTTGAAAAGCAAGCGCGCGCTGCGTTTTTCTCaaagcaaaaatgattgaa
gccTAAGTTGCGATCGCAGCGCAAGCTAGTGGAGACAGACCTTAAGGCAT
AAAGGAGACACAAGGTGGgtgaaaaatggtgaaaatatttGCCGCAAGCA
AGTTACGACGGTTATCGAAGTCAATTGTAgtcgatcgaagtcaatcgaaa
tcaatcgaagatttacatttttttaaaggtttgatcGACTTCGATCGATT
CGACAATCACTTTGATtgacttcgattgacttcgattgaTTTCGATTGCT
TCGATCGCTTCCGATTGCTTCGATCGCTTCAATCgcttcgattgacatcc
cctggaaaGCATCAGGAGCAGTTTACAGAAAAACTGTAACTCAGGTAAAA
ATAGTTTTGTATCAATTACATATTTATTAGAGTTACCTTGGTAAAGTTCT
ACTATAGTGAAATTCGACCTATCATTATTTTGGATTTTAACAGTCATTAT
AGCACTGGTAAGAAATCAACCATTACCCCCAGTATCCAGCTAAGTGAGTT
TTAAGATTTGCCCTGGTGAACTTGTCACCAACTGTCCCTTCAAGTGTTTC
TTTTTCACGAGGTAGTCATGAATGgcctttttctttttagaacaCTCCAG
TGGGTGCACCAATTGTCAAAGGGTTAAAAAAGATGTCCAACACTGAAAAA
GAAGGACTTTTAAAACTATTCCAAATCGCATATTTGAATGCATACAAAGG
CAGACCTTACGTTGATTTTACAGATTGGGTAGAATGGGCTGAGTTAAATG
GTATTAAATTC Coding sequence (CDS) from alignment at scaffold_331:833441..836351+ >TCONS_00059834 ID=TCONS_00059834|Name=TCONS_00059834|organism=Clytia hemisphaerica|type=CDS|length=1548bp|location=Sequence derived from alignment at scaffold_331:833441..836351+ (Clytia hemisphaerica)
ATGAACTCAAACAAACCTCTTGCGAAAGAAAGAGCCAAAATAGAAAGGAA
CATGGcatctcaaaattttccaaaaataaaaactcttcaaaaatggaaaa
acgatTTTTCATGGTTAAATGTAAACCATTCTCAGGGAATGACATGTAAA
CTCTGTGTCAAATGGGTAAAGACAATAGAATCGAGCAAAAATTATTCGGT
AGCATTTGTGAAAGGATCTAAGAATTACAGAAGATCTGCTGTAGCTGAAC
ATGAAAAGACAACACAGCATGAACAGAGTAAAGAACTTGAAGAAGAGGAA
AGATGCAAAGCACCAGGGGCAGTTTACAGAAAAACTGTAACTCAGaacaC
TCCAGTGGGTGCACCAATTGTCAAAGGGTTAAAAAAGATGTCCAACACTG
AAAAAGAAGGACTTTTAAAACTATTCCAAATCGCATATTTGAATGCATAC
AAAGGCAGACCTTACGTTGATTTTACAGATTGGGTAGAATGGGCTGAGTT
AAATGGTATTAAATTCATGAACTCAAACAAACCTCTTGCGAAAGAAAGAG
CCAAAATAGAAAGGAACATGGcatctcaaaattttccaaaaataaaaact
cttcaaaaatggaaaaacgatTTTTCATGGTTAAATGTAAACCATTCTCA
GGGAATGACATGTAAACTCTGTGTCAAATGGGTAAAGACAATAGAATCGA
GCAAAAATTATTCGGTAGCATTTGTGAAAGGATCTAAGAATTACAGAAGA
TCTGCTGTAGCTGAACATGAAAAGACAACACAGCATGAACAGAGTAAAGA
ACTTGAAGAAGAGGAAAGATGCAAAGCACCAGGGGCAGTTTACAGAAAAA
CTGTAACTCAGaacaCTCCAGTGGGTGCACCAATTGTCAAAGGGTTAAAA
AAGATGTCCAACACTGAAAAAGAAGGACTTTTAAAACTATTCCAAATCGC
ATATTTGAATGCATACAAAGGCAGACCTTACGTTGATTTTACAGATTGGG
TAGAATGGGCTGAGTTAAATGGTATTAAATTCATGAACTCAAACAAACCT
CTTGCGAAAGAAAGAGCCAAAATAGAAAGGAACATGGcatctcaaaattt
tccaaaaataaaaactcttcaaaaatggaaaaacgatTTTTCATGGTTAA
ATGTAAACCATTCTCAGGGAATGACATGTAAACTCTGTGTCAAATGGGTA
AAGACAATAGAATCGAGCAAAAATTATTCGGTAGCATTTGTGAAAGGATC
TAAGAATTACAGAAGATCTGCTGTAGCTGAACATGAAAAGACAACACAGC
ATGAACAGAGTAAAGAACTTGAAGAAGAGGAAAGATGCAAAGCACCAGGG
GCAGTTTACAGAAAAACTGTAACTCAGaacaCTCCAGTGGGTGCACCAAT
TGTCAAAGGGTTAAAAAAGATGTCCAACACTGAAAAAGAAGGACTTTTAA
AACTATTCCAAATCGCATATTTGAATGCATACAAAGGCAGACCTTACGTT
GATTTTACAGATTGGGTAGAATGGGCTGAGTTAAATGGTATTAAATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059834-exon-scaffold_331-1491911889:833441..833837 | TCONS_00059834-exon-scaffold_331-1491911889:833441..833837 | Clytia hemisphaerica | exon |
| TCONS_00059834-exon-scaffold_331-1510915933:833441..833837 | TCONS_00059834-exon-scaffold_331-1510915933:833441..833837 | Clytia hemisphaerica | exon |
| TCONS_00059834-exon-scaffold_331-1575043694:833441..833837 | TCONS_00059834-exon-scaffold_331-1575043694:833441..833837 | Clytia hemisphaerica | exon |
| TCONS_00059834-exon-scaffold_331-1491911889:835909..835934 | TCONS_00059834-exon-scaffold_331-1491911889:835909..835934 | Clytia hemisphaerica | exon |
| TCONS_00059834-exon-scaffold_331-1510915933:835909..835934 | TCONS_00059834-exon-scaffold_331-1510915933:835909..835934 | Clytia hemisphaerica | exon |
| TCONS_00059834-exon-scaffold_331-1575043694:835909..835934 | TCONS_00059834-exon-scaffold_331-1575043694:835909..835934 | Clytia hemisphaerica | exon |
| TCONS_00059834-exon-scaffold_331-1491911889:836181..836351 | TCONS_00059834-exon-scaffold_331-1491911889:836181..836351 | Clytia hemisphaerica | exon |
| TCONS_00059834-exon-scaffold_331-1510915933:836181..836351 | TCONS_00059834-exon-scaffold_331-1510915933:836181..836351 | Clytia hemisphaerica | exon |
| TCONS_00059834-exon-scaffold_331-1575043694:836181..836351 | TCONS_00059834-exon-scaffold_331-1575043694:836181..836351 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_331 | supercontig | scaffold_331:833441..836351 + |
Blast
The following BLAST results are available for this feature:
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