Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059844 ID=TCONS_00059844|Name=TCONS_00059844|organism=Clytia hemisphaerica|type=transcript|length=5122bpRun BLAST on NCBI protein sequence of TCONS_00059844-protein >TCONS_00059844-protein ID=TCONS_00059844-protein|Name=TCONS_00059844-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1324bp MEDSMTEESKVGQIKTEETLKKQSKEEVDDSEEEESQSDEDAKNTLDSETRun BLAST on NCBI transcript from alignment at scaffold_331:897514..909582+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00059844 ID=TCONS_00059844|Name=TCONS_00059844|organism=Clytia hemisphaerica|type=transcript|length=12069bp|location=Sequence derived from alignment at scaffold_331:897514..909582+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_331:897514..909582+ >TCONS_00059844 ID=TCONS_00059844|Name=TCONS_00059844|organism=Clytia hemisphaerica|type=CDS|length=43725bp|location=Sequence derived from alignment at scaffold_331:897514..909582+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00059844 vs. Swiss-Prot (Human)
Match: RSF1 (Remodeling and spacing factor 1 OS=Homo sapiens GN=RSF1 PE=1 SV=2) HSP 1 Score: 103.99 bits (258), Expect = 6.090e-22 Identity = 65/210 (30.95%), Postives = 108/210 (51.43%), Query Frame = 2 Query: 359 PSDYADFAAIHSFLTMFGVELDLPNVSLIDLEQIFSTNHRLSFEKDNIGILEV------LYMKLFRKLKQSYRYSPVANVTSDRLFKTIVRYVYLVRFEQAEQVQFQGYESLSTEQRLKLFKSLCEIQFEENSKFRSTLQETFKGDNASALRLEPFGVEQEGYHIWFQEDQDCNFIVYASGATNENIEEWDVRARTFEELEVYIADLKSR 970 P +FA + SFL +G LDLP + +LE++ L ++G EV L++KL RK+ +S VT+DR K +++ A +++ +GY +S E +L L K LCE QF++N KF++ + E ++A +RL+P G +++G W+Q DQD N +Y +++ W R EL +A LK++ Sbjct: 17 PGSCPNFAVVCSFLERYGPLLDLPELPFPELERV------LQAPPPDVGNGEVPKELVELHLKLMRKIGKS--------VTADRWEKYLIKICQEFNSTWAWEMEKKGYLEMSVECKLALLKYLCECQFDDNLKFKNIINE----EDADTMRLQPIGRDKDGLMYWYQLDQDHNVRMYIEEQDDQDGSSWKCIVRNRNELAETLALLKAQ 208 HSP 2 Score: 99.7525 bits (247), Expect = 1.041e-20 Identity = 55/153 (35.95%), Postives = 84/153 (54.90%), Query Frame = 2 Query: 1187 DDGCVKCLRNKQDDQVLLCDTCDAGYHATCLVPPVTTIPEGDWYGPHCMHVTLAQKLAERM----AAIRKKVQAKERKSRRMQFYGIRQSNII---ESNSNEPQ--------------TGRRAGRTK--VDYRFSEYDRTVEDALRSSEEEND 1576 D+ C KC + +LLCD+CD+GYH CL PP+ IP+G+W+ P C H L +KL E++ A++KK +A ER+ R+ + GI NII E + +E Q RR+ RT+ + YRF E+D +++A+ +E D Sbjct: 891 DEPCKKCGLPNHPELILLCDSCDSGYHTACLRPPLMIIPDGEWFCPPCQHKLLCEKLEEQLQDLDVALKKKERA-ERRKERLVYVGISIENIIPPQEPDFSEDQEEKKKDSKKSKANLLERRSTRTRKCISYRFDEFDEAIDEAIEDDIKEAD 1042 The following BLAST results are available for this feature:
BLAST of TCONS_00059844 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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