TCONS_00059856 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059856
Unique NameTCONS_00059856
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length594

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059856 ID=TCONS_00059856|Name=TCONS_00059856|organism=Clytia hemisphaerica|type=transcript|length=594bp
tgGCAAAGAGGGAATTCATACTataatgaaaattgatttcatATCCCGTG
GAATAGTCCAGAATATCAAAAATGACAAACGCTGCTCTTTTTGTCATTAC
GTTTCTACCATCCATTTTCTCATCTACCATGGTGCAGAAAGCTGAAAAGC
TAGAATCAGTTTGTACTCAATTGCAAGCAGTCTATCCCAATATGTGTGGC
AGCGATGTTGTCAAAAACCACTGTAGTACTTTATGTTCTAAAGGTGTTGA
CCAAAAACTTACTTGTGGTAAACATGTAAAAAAGCCACACACTCGGCGGC
GCCGTATTGTGGGTGGTGTGGTTAGCGATGCCGGAGAATGGCCATGGCAT
ATAAGTTTACGAATGGGTGGTAAGCACGTATGTGGCGGATCAATATTGAC
GCCCGAAGTGATAGTAACTGCCGCCCATTGTGTTGATGCAAAATACACAA
GTGAAGATCCCAAGAATTTTGACGTTGCAGCTCAAACGAATTATCATAAA
GAGCCTGGACAGATTGTTCAAGTGAAAAGATTGATTCGACACAAGGAATA
TGAATTCACTGATCATAAATGGAGGGACTTGTTCTTCGTATATG
Run BLAST on NCBI

transcript from alignment at scaffold_331:1159516..1164220+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059856 ID=TCONS_00059856|Name=TCONS_00059856|organism=Clytia hemisphaerica|type=transcript|length=4705bp|location=Sequence derived from alignment at scaffold_331:1159516..1164220+ (Clytia hemisphaerica)
tgGCAAAGAGGGAATTCATACTGTAAGTATCGATTTAAGCTCAAAGGACT
TTAGCTTTGATTTTAATCTATGGTTTGATGTAGGTTTCTTTTTACTATGG
ATGAGTGAAAATTTGATTCATAACCTAATCTGGTCACCATTATCCTAGGG
ACTCTCTATTCCCACTGGCTTAAAGAATATGACCAGGTTTCTGAGACAGG
AATGCAAAAAAGTTTTGTGGCGAAATAGAACTGATGCTGTAGTTGTGGTG
GACCTATGAAATGCATAGAAGATAGAAGATAGTTGGTCAGAAATGTTGTG
AATTTCTTCAAATATATTTAGCTCCACAAAAGTGCTCATCTCTTATTTGC
TCTTACTCGTTCGGGTTTAGTTTACGCGATGCTTGAATATTGCGAGTGCG
TTATTTAAAAGGAATAcaattttattgtaaaaaaaaactgtGACTTTAAG
TGTAATAGGTTAAATGATCTtgcctttatataccctggaccaagtttctc
attcctagccaagcaaaatctttgattggagtttttttgaaagtgtcacc
ataatggtagcactactcgtaaacttttgatgatgtagcgccgttagacg
ttaatttttaacactgcaatgacttctttacgggtaccaattccaaaaaa
aactctgatcaaagatggcagatatagcttggtccagggatacaTAAAGG
TCAGTGAATAGGTTACTTATGTGACTTTGCTGACATCAGATTTCATGATA
TAGACCAAACAAATCATAATGCGTTTGTATTAATCTTTATTTGTATAGAT
CGTCCTGACCTTAAAGCCCTCATAATCGCTTGATTCTGACGTATGTCCAG
TTGACCTTTCTATGTATGAAACTATAAAATAGAGGGTTTATATCGGCATA
GCATTAGTAAATGTCTTTTAGTAAGGAGGAGTTTTGATAGCCCGGATAGC
CAATATGAtttctttctcattttgatATTTCTGCTACAATCATGATCGAA
GTATATTGAGAATTCAggttattttaatgttttttttcaaagatttaaaa
ttccgtcgagaaagtcgattttgggggTCGGCAGACTTCTAGgatatatt
ctgagccttattggactatttttgaacttttggatcatcagatcctaagg
tcttaagtctagtATTAAAACTCGAACCTTctaacctactttagagcact
tacaaatcgattatggtttcaaaacttcccggggaatttcccttttttct
caaatattatgaccttgattgtatatTTAAGGGTTGATCTAACTAACTAG
ATGCTTATGAGATCAGGGtcggcaaatttttttgctctgCATAATAATCG
AATCGAAAAATACGTATACGCTGCCTTCCGATTTTGAAATGCTTTAGGAA
GACCAGGTGGTAAATCAGAAAcatccaaaatagaaaaatagtgAAAcact
ggatatccaggctagagtTGTTGATTTTCCTTCTTTGAAAAAAGTACAAA
TTACGCTCTTTcgattttttaacgttttctttATTAGTCAGGGATAAAAT
CAAGTTAGCCTATCAACGGTTGCGTAGACGATATTTTGTATCCATTTCTA
TCGAAACATCATTCTTTTACACAAGTAcgctgttttttataagaacaatt
ttacaagagcAATGAGACTCGAAAATTCCATAAGATAAAAAGAAGAACAA
CCCTCAGCCTGGAATTTCCAGCAAATCCAggaaaattctgatttttttgc
tctaaaagagttgaaaatttgagaaaaatgcactgcaagggtatgaattt
caccaattttttctgcactgtaagggtgcgattttaaaagccaatttttt
cgtcGCAAATACCAGTTGGTAAACCAAATGCCCCCTGGATCAACTTAGTG
ATTGAGATGTTCAAGATTCAGATATAAGCGTATGCGTAAGGGCAGAGATT
TTCACCATcacgaaaaaaattatatatattctATATAAGCGATTCTTTAT
GTTTCTTTCCTCATAGTTGAagtaaacaaaattttagttgggaaatattt
tttttggttaagaaaatcaagtttaaatAAAAGTTATGACACTTTGCAAA
TATAATGTTTTGGAATTTTAAGTTTGTGCAACTAATAGAGCCTTGTGAAG
Aatgatattttgaaacttttgaaatgaaaaatggaaatttttgcgaaatt
ttgcaaaaaaaaatatcataaaaacattgttttttttctggaatgaaaaa
tatgtcaaatgacatattttttcgaattttctatGTTGAATTTCGAAATA
AGTTCTTAGAAATGTTTGAGGGAGGATTGACGGCAGgagtaaaagtaaat
taaaagaactATTAGAATTTTATAGTGAGCGAATATTTAGGATTATTTGT
TTTATAATATGAAAATAGTGTGCTCTCAGTTCACCCATTGTTTTCTTTAT
AGGAGACATATTTTCCGACACTAAattgtaattaattttttaaacgaaaa
ttttAGCTGCGTCATTCTTGCTTAGCCCTGTTTGtggaaaaactgagaaa
aatagATTCgtttccttatttttctcttcagtttgttgtttgtgaaggTC
GAGAGGGTAGGGCTATAGTACGGTTTAAGGATGTTGGAGGGTCTAAAGAG
TACTAATTTATAGTTATGGTTTCTtacaaacacaaaaataaatataaagg
taaaataacaaaaagttaGATCTTATATATGTACAGGGAACATAAATCTT
GTTTAAAGGCTTTTTTCTAGGGGCTTTATACCGAAAGGTATAATAAGTGG
ATAACTCGAACTTCGACAAATCGAAAGTCTTGAGAATACAGAAGTTCGAG
CCTCTACTTAACTTCTTTGTTTGTATGTTTTAGataatgaaaattgattt
catATCCCGTGGAATAGTCCAGAATATCAAAAATGACAAACGCTGCTCTT
TTTGTCATTACGTTTCTACCATCCATTTTCTGTAAGTCATTTTTCTGGCA
ACCGACGTAGAAATTTTcctccgacacgctaaagctctgaaggaaaaatt
tttaatattttaaattttcatctttaaggTTTGGAATACAGAATTTCGTC
AGACCACGCTACGGAACTCTGTTTTAAGCTTTACCATATTTTTACTTCCG
TGTATTATTTTAAGGTTGATGTATATATATTAAAGGCttcttcttttctc
ttttccAGCATCTACCATGGTGCAGAAAGCTGAAAAGCTAGAATCAGTTT
GTACTCAATTGCAAGCAGTCTATCCCAATATGTGTGGCAGCGATGTTGTC
AAAAACCACTGTAGTACTTTATGTTCTAAAGGTAATATTTGTCTAGTAGG
AGACAGTAGAGGAGAGATCCTCAATTTCCTCTTTTAGATTTCATTGATTC
AGGACTGTAATTTCTGATTTAGTTTTGTCATTGATAATAATTTCCTTTAC
CAATAAAAGCAGTATTGAGAGAAGGAAAATATCATAAATTCTACGTTTGT
AGGAAACTGGCTCGTTATTGAGGTCCCGGGGTGTACCTGGACATATGGAA
GAGTAGGGGTGTGTTTTGTCGTTAATGATACTTCTTTTGGACCTTCGAAA
TCCCGCTAAGAGTCGTAAAAACACCCACTCGCCATCTGGGAACCTAGTAC
CCCATTCGATATCACATTCACGCTTGGTTTTCTCTAGCAAACAAATGGaa
ttttggaattatatttCTTCTTAGATAGCGCGATAGTAACAAGTTTTGAA
TTGCTGTAGTGAGATAGAGAATAAGAAATAATACTTGTTCCCTTTTAGGT
GTTGACCAAAAACTTACTTGTGGTAAACATGTAAAAAAGCCACACACTCG
GCGGCGCCGTATTGTGGGTGGTGTGGTTAGCGATGCCGGAGAATGGCCAT
GGCATATAAGTTTACGAATGGGTGGTAAGCACGTATGTGGCGGATCAATA
TTGACGCCCGAAGTGATAGTAACTGCCGCCCATTGTGTTGGTAAGTGTTT
TACACTTGTACATTCGTGGTCAATTTCGATTATCTTTTAGTCCATAGTGA
GTAAACAATTTTTTATAGGAATTACATAAAACTAAGGTGACCACCCcagt
tttatttttctcttaaaTTCTATCTGCGGCAGcagtttataagaatttta
tcgTGCATGTCCCCAATCACTTTGTTATACTATTCAAAGAATCGAAGATG
GAGAAATAGAGTCGATAATTTACattggatagcccagtaatcttgAACTT
TTAGATAGTCTTTCCATTATTTTCACGGGGCCTACGACTCCTACAACTAG
CCAGAAGCAGAACATAACCTCATTTTAAACTTAAACAGACTATATCATTG
CATATTTCTAGTTTTTTACGATCCTTCTGAGACAATATATCGGACACTTG
GAGGtattaaaaataacaaacaaatcTAAAACAGTTTCTTACTTCGAGTA
TACAATTTGTCATACACGTTTCAGGTACAATTTTGGTGCAGTCCTaatga
ataaaatttttgttgtttttattttttactttaaattctATTGTAGATGC
AAAATACACAAGTGAAGATCCCAAGAATTTTGACGTTGCAGCTCAAACGA
ATTATCATAAAGAGCCTGGACAGATTGTTCAAGTGAAAAGATTGATTCGA
CACAAGGAATATGAATTCACTGATCATAAATGGAGGGACTTGTTCTTCGT
ATATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037647XLOC_037647Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059856-exon-scaffold_331-1491911889:1159516..1159537TCONS_00059856-exon-scaffold_331-1491911889:1159516..1159537Clytia hemisphaericaexon
TCONS_00059856-exon-scaffold_331-1510915933:1159516..1159537TCONS_00059856-exon-scaffold_331-1510915933:1159516..1159537Clytia hemisphaericaexon
TCONS_00059856-exon-scaffold_331-1575043694:1159516..1159537TCONS_00059856-exon-scaffold_331-1575043694:1159516..1159537Clytia hemisphaericaexon
TCONS_00059856-exon-scaffold_331-1491911889:1162399..1162496TCONS_00059856-exon-scaffold_331-1491911889:1162399..1162496Clytia hemisphaericaexon
TCONS_00059856-exon-scaffold_331-1510915933:1162399..1162496TCONS_00059856-exon-scaffold_331-1510915933:1162399..1162496Clytia hemisphaericaexon
TCONS_00059856-exon-scaffold_331-1575043694:1162399..1162496TCONS_00059856-exon-scaffold_331-1575043694:1162399..1162496Clytia hemisphaericaexon
TCONS_00059856-exon-scaffold_331-1491911889:1162724..1162846TCONS_00059856-exon-scaffold_331-1491911889:1162724..1162846Clytia hemisphaericaexon
TCONS_00059856-exon-scaffold_331-1510915933:1162724..1162846TCONS_00059856-exon-scaffold_331-1510915933:1162724..1162846Clytia hemisphaericaexon
TCONS_00059856-exon-scaffold_331-1575043694:1162724..1162846TCONS_00059856-exon-scaffold_331-1575043694:1162724..1162846Clytia hemisphaericaexon
TCONS_00059856-exon-scaffold_331-1491911889:1163314..1163505TCONS_00059856-exon-scaffold_331-1491911889:1163314..1163505Clytia hemisphaericaexon
TCONS_00059856-exon-scaffold_331-1510915933:1163314..1163505TCONS_00059856-exon-scaffold_331-1510915933:1163314..1163505Clytia hemisphaericaexon
TCONS_00059856-exon-scaffold_331-1575043694:1163314..1163505TCONS_00059856-exon-scaffold_331-1575043694:1163314..1163505Clytia hemisphaericaexon
TCONS_00059856-exon-scaffold_331-1491911889:1164062..1164220TCONS_00059856-exon-scaffold_331-1491911889:1164062..1164220Clytia hemisphaericaexon
TCONS_00059856-exon-scaffold_331-1510915933:1164062..1164220TCONS_00059856-exon-scaffold_331-1510915933:1164062..1164220Clytia hemisphaericaexon
TCONS_00059856-exon-scaffold_331-1575043694:1164062..1164220TCONS_00059856-exon-scaffold_331-1575043694:1164062..1164220Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_331supercontigscaffold_331:1159516..1164220 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.104337	0	0	0	1.51747	0.875741	2.30301	2.83695	0.679291	1.62675	9.6539	5.84191	0	0	7.92818	10.253	8.08462	13.8251	6.92599	6.56232	0	0	0	0	3.8675	3.79877	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059856 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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