TCONS_00059901 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059901
Unique NameTCONS_00059901
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length863

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059901 ID=TCONS_00059901|Name=TCONS_00059901|organism=Clytia hemisphaerica|type=transcript|length=863bp
ccccccaccgggCACGTCTCCGTCGGCCGTTAAGGTCAGTGCCCCCGCGG
GATCTATATACAGTAtgtgattttgaaaattatttaatagTCATTGCTCA
TCACAAGCAACGCAAGAATATTCAAATCCATTATAAAGAAATGTTATACG
CGATGCCTTTCAATCTCTGGTACTCTTATGACCAGTTGCTCAGCTCGATT
ACAACTCTGAGATGTCCGAGATTATTTTAGCTTCCATATTTAACATATTA
TGGATGTTATGGACATGATATGATATGAATGATGTCTTGACACCTgtttc
aatagaccttatcggagttttttattcttctaaaacagcgatgcaaTGTG
GGATTggttcgggggtattacaatagaattccctcgaggaattcctaaga
gatttctattgttatAGAAACAATCCCAGGCatcgcttttttaaaaaaat
caaaaactccgataagatctattattTCTCATTCTAAATTTCACGTTATC
ACTCCATCCACCGCTTTCCAAAGCCATTTATTAATCTCGAAAACAAGCAA
TGAATATTGTTACAATAATTATTCTCTGAACTCGATAATGATTCTCGGTA
ATTTTGGAGCACCAAATGTGAAAGTGATTACAGCAGCAATGAGGGTCAAC
ACGAATGCTACCCAACCGAAAACAAATGACCAACTGTATTTATAAAGATC
GAATGAATCTTCTTCATTCACCTTAGCTGTATACACTGCCATCCCGATAA
GTAAAAATACACCTGTGATGATGTGGCAAATAGCGGATACTTGACCTTTG
ACACGATCTGAACATAACATACCAATTCCACCAATAAAAGCAAAAATTGA
TGGTAGAGTTGCC
Run BLAST on NCBI

transcript from alignment at scaffold_331:681685..685199-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059901 ID=TCONS_00059901|Name=TCONS_00059901|organism=Clytia hemisphaerica|type=transcript|length=3515bp|location=Sequence derived from alignment at scaffold_331:681685..685199- (Clytia hemisphaerica)
CCCCCCACCGGGCACGTCTCCGTCGGCCGTTAAGGTCAGTGCCCCCGCGG
GATCTATATACAGTATGTGATTTTGAAAATTATTTAATAGTCATTGCTCA
TCACAAGCAACGCAAGAATATTCAAATCCATTATAAAGAAATGTTATACG
CGATGCCTTTCAATCTCTGGTACTCTTATGACCAGTTGCTCAGCTCGATT
ACAACTCTGAGATGTCCGAGATTATTTTAGCTTCCATATTTAACATATTA
TGGATGTTATGGACATGATATGATATGAATGATGTCTTGACACCTGTTTC
AATAGACCTTATCGGAGTTTTTTATTCTTCTAAAACAGCGATGCAATGTG
GGATTGGTTCGGGGGTATTACAATAGAATTCCCTCGAGGAATTCCTAAGA
GATTTCTATTGTTATAGAAACAATCCCAGGCATCGCTTTTTTAAAAAAAT
CAAAAACTCCGATAAGATCTATTATTTCTCATTCTAAATTTCACGTTATC
ACTCCATCCACCGCTTTCCAAAGCCATTTATTAATCTCGAAAACAAGCAA
TGAATATTGTTACAATAATTATTCTCTGAACTCGATAATGATTCTCGGTA
ATTTTGGAGCACCAAATGTGAAAGTGATTACAGCAGCAATGAGGGTCAAC
ACGAATGCTACCCAACCGAAAACAAATGACCAACTGTATTTATAAAGATC
GAATGAATCTTCTTCATTCACCTTNACAAATGACCAACTGTATTTATGAA
GATCGAATGAATCTTCTTCATTCACCTTAGCTGTATACACTGCCATCCCG
ATAAGTAGAAATACACCTAAATATGAAATTAAACCAGGTTATAAACTCAG
GGGTCACAGTAATATGGAGCGTCCGGGCTGATAGGATTTACACAGAAGTT
ACACAAACGTAGGCCCACTACCATAAACAAAAATAGGGTTTTTCTTAATA
CGATGTAGGCTTTGTTACCAGTAGTCTTTTAACACTCCCTGCGGTTGCGA
AAATGGTTTTTGGTGTCAGATAGACATTTCAATATTAAGGGCTGAAAAAA
CACATTTTAATATGTGATGTGAGAAACTGAAATCATATTCGATTTTAGAA
ACCTTTAAACTTGCCAGACGCGACAAATATCTTAAAGGAGCAAAGAGTTA
GTTAAAATCTTGATTCTCCTATATGAAGTAAATGGACGAATTTGCTGAAT
CATCCCTGATTACAGCAGTAGCGGCCTGGCTTAATTTTCTTGGTGGTGCA
AACTATGAAATTGGCGCCCCTAGTATTTTTGTCCTTATTTGCGCCCTCTA
CCAGTAAGTGAAACTTTTAAAGAGGCCTCCCCCCGGCGGTTTGCGTGATG
GCGTGATTGGGACTTTTTTCTTGCATGATGGCGTGATTAAACATTTTTTT
TGGCGTGATGGCGTGATCAAGAATTTGGCGTGATGCGTGATAGGGCAAAA
ATTTGAGGCGTGATGCGTGATTTGGGCTATTTTTCGCTATATTATCGATT
TTTGTGATGCGTGATGGAGAAATTTTTTTTGCGTGATGGCGTGATTAGGG
GTGCCGCTGGGGGGCCTCGTTAAACTGGTAAGAGCAGTGACTGGTTGAAA
GTAACGCCCGGAATCTCTGAGTTAACAAAGTTTTATTTATACGAAGGTGG
TGGTAATGATAATTTGATATCTATTTCCTTGTTATTACCTGGTACTTGTT
ATTACTTGTTATTATACTTGTTATTACCTGTACTCTCCATTAAAGATCAA
TGGCTGAAAGAGGCCCCAAAAATTCGAAAGTTGGCAAGAATAAGGGTTCT
TTGTAATTCTAGCGCCGCAGGCAAAAAAATTNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNAAGATCAATGGCTGAAAGAGGCCCCA
AAAATTCAAAAGTTGGCAAGAATAAGGGTTCTTTGTAATTCTAGCGCCGC
AGGCAAAAGAATTTGGTGCAAGAAAGGTCAAACAGCTTATAAGATATTCT
AAAAAGGAGAAGGTTAACCCGCATAAGACCACAAAAACCACAGCGAGCAG
TTTCGATCAATCTCTGATTTTGGGGATGAGCATCCTCTTTAACCCCTGGT
GGATACACAACACTTCTCTTGCTTTTACTTTTCGCAATTCAATGTTGATA
GTAGTTTTGAAAAAAATCGTAAAATAAAATGAATGAAGCGCCGCAGGCGA
AAAAAAAATTACATTGCACTTATAGAAGGCGCTAAAAACGTGTCAAAGGG
CGCAAAATCGCCCAACCAAACANGATTGGTTCGGGGGTATTACAATAGAA
TTCCCTCGAGGAATTCCTAAGAGATTTCTATTGTTATAGAAACAATCCCA
GGCATCGCTTTTTTTTAAAAATCAAAAACTCCGATAAGATCTATTATTTC
TCATTCTAAATTTCACGTTATCACTCCATCCACTGCTTTCCAAAGCCATT
TGTTAATCTCGAAAACAAGCAATGAATATTGTTACAATAATTATTCTCTG
AACTCGATAATGATTCTCGGTAATTTTGGAGCACCAAATGTGAAAGTGAT
TACAGCAGCAATGAGGGTCAACACGAATGCTACCCAACCGAAAGCAAATG
ACCAACTGTATTTATAAAGATCGAATGAATCTTCTTCATTCACCTTAGCG
GTGTACACTGACATCCCGATAAGTAAAAATACACCTAAATATGAAATTAA
ACCAGGTTATAAACTCAGGGGTCACAGTAATATAGAGGGGGGTCCGGGCT
GATAGGATTTACACAGAAGTTACACAAACGTAGGCCCACTACCATAAACA
AAAATAGGGTTTTTCTTAATACGATGTAGGCTTTGTTACCAGTAGTCTTT
TAACACTCCCTGCGGTTGCGAAAATGGTTTTTGGTGTCAGATAGACATTT
CAATATTAAGGGCTGAAAAAACACATTTTAATATGTGATGTGAGAAACTG
AAATCATATTCGATTTTAGAAACCTTTAAACTTGCCAGCAGTGGCGTGGT
GGGAAAATTTCTCTGATTTTTTGTTTTTGGCGCCCCTCTCTATACGCTCA
TTATGAACACAAAAAAGGGAGTGTGCGAGCGAAGCGAGCCAGAAAATTTT
GAGTTTTTGAGGTGATGAGGACGCCATTTTTGTTTTTTCATTTGTCAATT
TTTCGATATGGGCGCCTGAAAAATCCTTCTTGGCGTCCCTTATTTTTGGG
CGCCCCTTCTCAAAAGGGCTCCGCTGGGGGGGGCCTGGCCCCCTGGCCCC
CCTGCCACCACGCCACTGCTTGCTAGACGCGACAAATATCTTAAAGGAGC
AAAGAGTTAGTTAAAATCTTGATTCTCCTATATGAAGTAAATGGACGAAT
TTGCTGAATCATCCCCTGATTACAGGGGTCTGATGGTTAGATCAGGTTTC
ACAATGATATTTACCTGTGATGATGTGGCAAATAGCGGATACTTGACCTT
TGACACGATCTGAACATAACATACCAATTCCACCAATAAAAGCAAAAATT
GATGGTAGAGTTGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037667XLOC_037667Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059901-exon-scaffold_331-1575043694:684479..685199TCONS_00059901-exon-scaffold_331-1575043694:684479..685199Clytia hemisphaericaexon
TCONS_00059901-exon-scaffold_331-1575043694:684406..684424TCONS_00059901-exon-scaffold_331-1575043694:684406..684424Clytia hemisphaericaexon
TCONS_00059901-exon-scaffold_331-1575043694:682516..682537TCONS_00059901-exon-scaffold_331-1575043694:682516..682537Clytia hemisphaericaexon
TCONS_00059901-exon-scaffold_331-1575043694:681685..681785TCONS_00059901-exon-scaffold_331-1575043694:681685..681785Clytia hemisphaericaexon
TCONS_00059901-exon-scaffold_331-1510915933:684479..685199TCONS_00059901-exon-scaffold_331-1510915933:684479..685199Clytia hemisphaericaexon
TCONS_00059901-exon-scaffold_331-1510915933:684406..684424TCONS_00059901-exon-scaffold_331-1510915933:684406..684424Clytia hemisphaericaexon
TCONS_00059901-exon-scaffold_331-1510915933:682516..682537TCONS_00059901-exon-scaffold_331-1510915933:682516..682537Clytia hemisphaericaexon
TCONS_00059901-exon-scaffold_331-1510915933:681685..681785TCONS_00059901-exon-scaffold_331-1510915933:681685..681785Clytia hemisphaericaexon
TCONS_00059901-exon-scaffold_331-1491911889:684479..685199TCONS_00059901-exon-scaffold_331-1491911889:684479..685199Clytia hemisphaericaexon
TCONS_00059901-exon-scaffold_331-1491911889:684406..684424TCONS_00059901-exon-scaffold_331-1491911889:684406..684424Clytia hemisphaericaexon
TCONS_00059901-exon-scaffold_331-1491911889:682516..682537TCONS_00059901-exon-scaffold_331-1491911889:682516..682537Clytia hemisphaericaexon
TCONS_00059901-exon-scaffold_331-1491911889:681685..681785TCONS_00059901-exon-scaffold_331-1491911889:681685..681785Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_331supercontigscaffold_331:681685..685199 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0559624	0.1105	0	0.225539	7.13993	2.84256	0.393408	0.381372	0	0.61435	0.292933	0.74339	5.0386	0.862585	0.276348	0.672555	0.13397	0.143222	22.2407	16.6208	0.514987	0.849472	0.476045	0.696028	0.466149	0.235824	0.0922759	0.366273	0.353996	0.140672
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059901 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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