TCONS_00060151 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060151
Unique NameTCONS_00060151
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length717

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060151 ID=TCONS_00060151|Name=TCONS_00060151|organism=Clytia hemisphaerica|type=transcript|length=717bp
AAAAGACAGTGAGAAAAAATGAAGACAGAAGCGGATATAAGCATCCATCA
TAAACCATTAAAAACACATAAAGAATTAGTGGAAGAATTTTACTCTGGCA
TAACTCTTCATGGATTTCGATTTCTCTTTGAAGGCAATAAGGAGAAGGAC
CACAACAGCAACAACACAGGCCGTTTCATTCAGGATTTGATTCAAAAAGG
GATTGATACGAAAACAAAGTTTATCAACTCTTACGATCTTCCGtttgaag
aaattttccaaTCAGACGTGTTGGAACATTTAGCACCAGGAGGAAGCTGT
AACTTTTATGGTCAAAAATGTGACACCTCTTGGTTCACAGCTCGTTACAT
TCAAGAAgGTTCTTGTTACCAATTCAATGGATTGGAATCGTCATTATCGC
TGTCTTTAAAAGCACCGAAAAGAATTGGTTACTTTGACGGTTTTAATTTA
GTATTGGACTTTGGAAAAGCCATGATAGCAAACCCTTCCTACTCTAATGC
TGTTATTACCATGTTTGAGAGTTTCGGGACACGTGATGATCACATACCTA
TTAATGGAGTTATCCAGCTTTCCACTGGAacaaaactttttgcaaagatC
ACCGAAAAAGAGAATAAAATGTTACCGAGTCCCTATAATACCCATTGTGG
TAaaactacactttttttttataagaaccagtaaatttttgctgaggctc
ggctgttcttatttttt
Run BLAST on NCBI

protein sequence of TCONS_00060151-protein

>TCONS_00060151-protein ID=TCONS_00060151-protein|Name=TCONS_00060151-protein|organism=Clytia hemisphaerica|type=polypeptide|length=221bp
MKTEADISIHHKPLKTHKELVEEFYSGITLHGFRFLFEGNKEKDHNSNNT
GRFIQDLIQKGIDTKTKFINSYDLPFEEIFQSDVLEHLAPGGSCNFYGQK
CDTSWFTARYIQEGSCYQFNGLESSLSLSLKAPKRIGYFDGFNLVLDFGK
AMIANPSYSNAVITMFESFGTRDDHIPINGVIQLSTGTKLFAKITEKENK
MLPSPYNTHCGKTTLFFYKNQ
Run BLAST on NCBI

transcript from alignment at scaffold_335:6352..10989+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060151 ID=TCONS_00060151|Name=TCONS_00060151|organism=Clytia hemisphaerica|type=transcript|length=4638bp|location=Sequence derived from alignment at scaffold_335:6352..10989+ (Clytia hemisphaerica)
AAAAGACAGTGAGAAAAAATGAAGACAGAAGCGGATATAAGCATCCATCA TAAACCATTAAAAACACATAAAGAATTAGTGGAAGAATTTTACTCTGGCA TAACTCTTCATGGATTTCGATTTCTCTTTGAAGGTACAAACTATCGCCGC GTCACCTGGTTTCTAATCTGTTCAGCAGTATTTGCTTTCTCAATTTACCT ATTCGAAAGTCTTCTAAATGACTACCTTGCTCATAAAGTTAATACCAGCA TTAGCCGTAGATACGCAACTGGAAAGTTTGACTTTCCAACTATCGTTATA TGCCCTTCCGGTAAGGCTATATCATCAGCAAAATATGACAACTATCCAAT TGATATTGGAATCGAtgattttagaaatttgaaaagataTCTTTCGTTAG GCAATAAGGAGAAGGACCACAACAGCAACAACACAGGCCGTTTCATTCAG GATTTGATTCAAAAAGGGATTGATACGAAAACAAAGTTTATCAACTCTTA CGATCTTCCGtttgaagaaattttccaaTCAGACGTGTTGGAACATTTAG CACCAGGAGGAAGCTGTAACTTTTATGGTCAAAAATGTGACACCTCTTGG TTCACAGCTCGTTACATTCAAGAAggtaacaatttttttttgcggtaTGT TAAATAGTtactaacctgataacagatgtggAGTTTTTGTAACATTTACA TTGAATTTCAGAAAGATGCTGAACTAACTGACGATCTATGTAGAGGTGAA AATACACAATCTGTTCTCAAGTTAGTTAGCCCTGGAAAAGTTGGTAGTGT TAAATTTGTGTGAATTCTCTTCTGACTTAAAGATggataaaccagctgcg ctggaaagtcagccaAGAAAGCTTAGAAATGATTAAGACGAAGTATAAAT AAAAATCTGAGCTCACCTTACAATATTTGCTTGGAACGTTTCAGACGAAA AATGATTTGCACACAGTGGAATCCGTCCGAATCAGAAGTTAGAAGGCAAA TTTATCTCACCTTAGGAAATTAGAACGAAATCATTTTATCATCCTTTGGC CTTTTGACAGCTTTCACATATACTTCGGTTGTATACGGAGGCCCATTAGT GCCATTTAGATTATCCTTTAGTTTTTTAAcgacgaaactaaaaaaaatga cGACGAAACTAAAAATAAATTGTTGCTTCGTTTCGTCGTCGAACAAATTT ACaacgaaactaaaaaattgacgacgaaactgaaaataaattgaaaatgg tggccctgatGGTTTCAATATGCAAATATCATTGATTCTGGCGGATTCTG AAGATGGATTTGATGGTTCTTGTGAATGAGATGCTGGTAATGACAAACCA GAATAATGATTTGACGGTGGAGATTGTTGGAATCACCAGTGTCATTGGAA TCATTTGAactaatcaatgatgaaatgaatGGTGCAAATGATGAAATCAG TGGTGCAAATTATGGAATCAATAgtgcaaatgatggaatcaatggtgcaa atgatggaatcaatggtgcaaatgatggaatcaatggtgcaaatgGtgga atcaatggtgcaaatgATGAAAACAATAGTGCAAATTATGGAATCAATAg tgcaaatgatggaatcaatggtgcaaatgatggaaccaatggtgcaaatg atggaatcaatggtgcaaatgatggaatcaatggtgcaaatgatggaatc aatggtgcaaatgatggaatcaatggttgcaaatgatggaatcaatggtg caaatgATGGAATCCATTGTGCGGGTGATAGAACCAACCATTGATTTTAT CATTTGCACTattcatttcatcattgattatttcCAATGATTCCAATGAC ACTGGTGATTCCAACAATCTCCACCGTCAAATCATTATTCTGGTTCATCA TTGCCAGCATCTCATTCATAAGAACCATCTTCACCagcattgcattcacc agaactatCAAATCCATCTTTAGAATCCACCAGAATCAACGATATTTGCA TTTTGAAACCATtagggccaccattttcaatttttttttagtttcgttgT CATTTTTTNAACCAGAACTATCAAATCCATCTTCAGAATCCACCAGAATC AACGATATTTGCATTTTGAAACCATtagggccaccattttcaattttttt ttagtttcgttgtcatttttttcaacgACGAAACGAAataaaacaattta ttttcagtttcatcGTCAACTTTGTAGTTTCGttgtcaattttttcaacg acGAAACGAAAtgataatttattttcagtttcgtCGTCAATTTCTCAGTT TCGTCGtcacactgggcgaaataagagattNTTTTTTCAACGACGAAACG AAAtgataatttattttcagtttcgtCGTCAATTTCTCAGTTTCGTCGtc acactgggcgaaataagagatttccaatcctggaaatatcttgaaaatat gatatttcaatatacttttgtaaatatggaaatatgacttttctatattt ccaaagttgtggaaatgtcatatttcatgatatttccaaatctaaaatat cacattttcaaaatatttccaacttttggtaatattttgataatatgatg tttcaatgaatttcagatttggaaatatcatgaaatatgatatttccaca actttggaaatataaaaaagtcatatttccatatttacaaaagtatatgg aaatatcatattttcaagatatttccaggattggaaatctcttatttcgc ccagtgcaattttttaagttcgtcgtcaatttttttagtttcgtcgttaa aaaattaaaggAAAATCTAAATGGCACTAATGGGCTTCCGTAGTTGTAAG TTAACCGGTTTGTGCTTCCCGACGGATCCTTACAGCAGGACTAAAACGga ggaaaaaaggaaatttttttgaattcgaATACTTTTATTGAGActtattt gaccaaatttcgatctttctggggaaaaaaagttaaacattttcctattt ttcctggGATTGAAATCTAAGTTTCTGATTTTCCTACCCTTTCAGGTACT GCAACGTTCCAAAAAAGCATCAAGGGGCAGCACATCCGTACTATCCGTGC ACTTGCCTAAGTAGCCcgtaaattttatgaaaataaatctTATCGGAGAT TTTtttgcattgtgggattgttttgggggtataatataacaatagaaatc tcttaagaattcctcgagggaaatctattgtaatacccccgaaacaatcc cacaatgcatcgctgttttagaaaaattaaaaactccgataaggtctatt gccaGAGCTCTGAGTGTTCCAAATACAGGTTTTTCTTATTAATTTTTTCG TTCTTTAATTTTTAGGTTCTTGTTACCAATTCAATGGATTGGAATCGTCA TTATCGCTGTCTTTAAAAGCACCGAAAAGAATTGGTTACTTTGACGGTTT TAATTTAGTATTGGACTTTGGAAAAGCCATGATAGCAAACCCTTCCTACT CTAATGCTGTTATTACCATGTTTGAGAGTTTCGGGACACGTGATGATCAC ATACCTATTAATGGAGTTATCCAGCTTTCCACTGGAacaaaactttttgc aaagatCACCGAAAAAGAGGTATTGAATCTTAATTTGGGGCCTAAAACCC CCATTTGGTATTCTCCCCCACCTACTCTTTTTCCGGGGCTCCCCccattg gaaaaaatatttttgagaccCAACATTTAATCATCTATTTGAAATGTTAT ATCTAACTTCTGCAATTTCTACCCCCACTTCCCATAAAATATCCTGAGAT CCCCCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNttttaaaaatataaatttcttccATTCTGTTTAAATAGAGGAG TAAAAAAACACAGTGTTCTCCCTTAAAGTTTTGTTTAGAAGCTTTGACTA CTAACCATGAATTATGCAGTTTGTCAGATTTCTGTGAAAATAACCATTTG AAATTACTAGacataatttaaaaatatctaaaaaatatgattctatccca gctggcacacaacattgtttcaacgttcatctaacgttatatggacgttg taaacattagatggacgttgaaacaacgttgtgtgccagctgggattacG TACAGACAAAGCTTATACGTCACATTTTGGTCTCTAACAGTGGATCTTAA TTATGCAATTCCGtcgaaatagaccttttcataaattatatcacgaacat cacttgcctcgttttgaaattattgccatggtgattaacttccAGCGTAT TTTATTACAattactttctattcataaaaaagatcatttaatgtctcaag ggatatgatcaccatggaaattATCTGGATACgaggtaagtgatgttcgt gacgtaatttatgaaaatgtctaaATTCTCTNTGGGATCAAAACTTGGAC GAACAGTAATTTCGATGTTCTTTACTCTTTCAGAATAAAATGTTACCGAG TCCCTATAATACCCATTGTGGTAaaactacactttttttttataagaacc agtaaatttttgctgaggctcggctgttcttatttttt

Coding sequence (CDS) from alignment at scaffold_335:6352..10989+

>TCONS_00060151 ID=TCONS_00060151|Name=TCONS_00060151|organism=Clytia hemisphaerica|type=CDS|length=2664bp|location=Sequence derived from alignment at scaffold_335:6352..10989+ (Clytia hemisphaerica)
ATGAAGACAGAAGCGGATATAAGCATCCATCATAAACCATTAAAAACACA
TAAAGAATTAGTGGAAGAATTTTACTCTGGCATAACTCTTCATGGATTTC
GATTTCTCTTTGAAGGCAATAAGGAGAAGGACCACAACAGCAACAACACA
GGCCGTTTCATTCAGGATTTGATTCAAAAAGGGATTGATACGAAAACAAA
GTTTATCAACTCTTACGATCTTCCGtttgaagaaattttccaaTCAGACG
TGTTGGAACATTTAGCACCAGGAGGAAGCTGTAACTTTTATGGTCAAAAA
TGTGACACCTCTTGGTTCACAGCTCGTTACATTCAAGAAgGTTCTTGTTA
CCAATTCAATGGATTGGAATCGTCATTATCGCTGTCTTTAAAAGCACCGA
AAAGAATTGGTTACTTTGACGGTTTTAATTTAGTATTGGACTTTGGAAAA
GCCATGATAGCAAACCCTTCCTACTCTAATGCTGTTATTACCATGTTTGA
GAGTTTCGGGACACGTGATGATCACATACCTATTAATGGAGTTATCCAGC
TTTCCACTGGAacaaaactttttgcaaagatCACCGAAAAAGAGAATAAA
ATGTTACCGAGTCCCTATAATACCCATTGTGGTAaaactacacttttttt
ttataagaaccagtaaATGAAGACAGAAGCGGATATAAGCATCCATCATA
AACCATTAAAAACACATAAAGAATTAGTGGAAGAATTTTACTCTGGCATA
ACTCTTCATGGATTTCGATTTCTCTTTGAAGGCAATAAGGAGAAGGACCA
CAACAGCAACAACACAGGCCGTTTCATTCAGGATTTGATTCAAAAAGGGA
TTGATACGAAAACAAAGTTTATCAACTCTTACGATCTTCCGtttgaagaa
attttccaaTCAGACGTGTTGGAACATTTAGCACCAGGAGGAAGCTGTAA
CTTTTATGGTCAAAAATGTGACACCTCTTGGTTCACAGCTCGTTACATTC
AAGAAgGTTCTTGTTACCAATTCAATGGATTGGAATCGTCATTATCGCTG
TCTTTAAAAGCACCGAAAAGAATTGGTTACTTTGACGGTTTTAATTTAGT
ATTGGACTTTGGAAAAGCCATGATAGCAAACCCTTCCTACTCTAATGCTG
TTATTACCATGTTTGAGAGTTTCGGGACACGTGATGATCACATACCTATT
AATGGAGTTATCCAGCTTTCCACTGGAacaaaactttttgcaaagatCAC
CGAAAAAGAGAATAAAATGTTACCGAGTCCCTATAATACCCATTGTGGTA
aaactacactttttttttataagaaccagtaaATGAAGACAGAAGCGGAT
ATAAGCATCCATCATAAACCATTAAAAACACATAAAGAATTAGTGGAAGA
ATTTTACTCTGGCATAACTCTTCATGGATTTCGATTTCTCTTTGAAGGCA
ATAAGGAGAAGGACCACAACAGCAACAACACAGGCCGTTTCATTCAGGAT
TTGATTCAAAAAGGGATTGATACGAAAACAAAGTTTATCAACTCTTACGA
TCTTCCGtttgaagaaattttccaaTCAGACGTGTTGGAACATTTAGCAC
CAGGAGGAAGCTGTAACTTTTATGGTCAAAAATGTGACACCTCTTGGTTC
ACAGCTCGTTACATTCAAGAAgGTTCTTGTTACCAATTCAATGGATTGGA
ATCGTCATTATCGCTGTCTTTAAAAGCACCGAAAAGAATTGGTTACTTTG
ACGGTTTTAATTTAGTATTGGACTTTGGAAAAGCCATGATAGCAAACCCT
TCCTACTCTAATGCTGTTATTACCATGTTTGAGAGTTTCGGGACACGTGA
TGATCACATACCTATTAATGGAGTTATCCAGCTTTCCACTGGAacaaaac
tttttgcaaagatCACCGAAAAAGAGAATAAAATGTTACCGAGTCCCTAT
AATACCCATTGTGGTAaaactacactttttttttataagaaccagtaaAT
GAAGACAGAAGCGGATATAAGCATCCATCATAAACCATTAAAAACACATA
AAGAATTAGTGGAAGAATTTTACTCTGGCATAACTCTTCATGGATTTCGA
TTTCTCTTTGAAGGCAATAAGGAGAAGGACCACAACAGCAACAACACAGG
CCGTTTCATTCAGGATTTGATTCAAAAAGGGATTGATACGAAAACAAAGT
TTATCAACTCTTACGATCTTCCGtttgaagaaattttccaaTCAGACGTG
TTGGAACATTTAGCACCAGGAGGAAGCTGTAACTTTTATGGTCAAAAATG
TGACACCTCTTGGTTCACAGCTCGTTACATTCAAGAAgGTTCTTGTTACC
AATTCAATGGATTGGAATCGTCATTATCGCTGTCTTTAAAAGCACCGAAA
AGAATTGGTTACTTTGACGGTTTTAATTTAGTATTGGACTTTGGAAAAGC
CATGATAGCAAACCCTTCCTACTCTAATGCTGTTATTACCATGTTTGAGA
GTTTCGGGACACGTGATGATCACATACCTATTAATGGAGTTATCCAGCTT
TCCACTGGAacaaaactttttgcaaagatCACCGAAAAAGAGAATAAAAT
GTTACCGAGTCCCTATAATACCCATTGTGGTAaaactacacttttttttt
ataagaaccagtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037846XLOC_037846Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060151-exon-scaffold_335-1491911889:6352..6484TCONS_00060151-exon-scaffold_335-1491911889:6352..6484Clytia hemisphaericaexon
TCONS_00060151-exon-scaffold_335-1510915933:6352..6484TCONS_00060151-exon-scaffold_335-1510915933:6352..6484Clytia hemisphaericaexon
TCONS_00060151-exon-scaffold_335-1575043694:6352..6484TCONS_00060151-exon-scaffold_335-1575043694:6352..6484Clytia hemisphaericaexon
TCONS_00060151-exon-scaffold_335-1491911889:6752..6976TCONS_00060151-exon-scaffold_335-1491911889:6752..6976Clytia hemisphaericaexon
TCONS_00060151-exon-scaffold_335-1510915933:6752..6976TCONS_00060151-exon-scaffold_335-1510915933:6752..6976Clytia hemisphaericaexon
TCONS_00060151-exon-scaffold_335-1575043694:6752..6976TCONS_00060151-exon-scaffold_335-1575043694:6752..6976Clytia hemisphaericaexon
TCONS_00060151-exon-scaffold_335-1491911889:9717..9970TCONS_00060151-exon-scaffold_335-1491911889:9717..9970Clytia hemisphaericaexon
TCONS_00060151-exon-scaffold_335-1510915933:9717..9970TCONS_00060151-exon-scaffold_335-1510915933:9717..9970Clytia hemisphaericaexon
TCONS_00060151-exon-scaffold_335-1575043694:9717..9970TCONS_00060151-exon-scaffold_335-1575043694:9717..9970Clytia hemisphaericaexon
TCONS_00060151-exon-scaffold_335-1491911889:10885..10989TCONS_00060151-exon-scaffold_335-1491911889:10885..10989Clytia hemisphaericaexon
TCONS_00060151-exon-scaffold_335-1510915933:10885..10989TCONS_00060151-exon-scaffold_335-1510915933:10885..10989Clytia hemisphaericaexon
TCONS_00060151-exon-scaffold_335-1575043694:10885..10989TCONS_00060151-exon-scaffold_335-1575043694:10885..10989Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060151-proteinTCONS_00060151-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_335supercontigscaffold_335:6352..10989 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (2.81126 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.140595 0.0323132 0.0424397 0 0 0.0745225 0.0903912 0.0405198 0.0594711 0.368452 0.286649 0 0 0.145515 0.0399979 0.0426608 0.312781 0.766368 0 0 0.961599 2.81126 0.415264 0.773775 0 0 0 0 0 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001873ENaC
Vocabulary: Biological Process
TermDefinition
GO:0006814sodium ion transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005272sodium channel activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006814 sodium ion transport
cellular_component GO:0016020 membrane
molecular_function GO:0005272 sodium channel activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060151 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
100200300400500600700Sequence
Match NameE-valueIdentityDescription
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