Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060230 ID=TCONS_00060230|Name=TCONS_00060230|organism=Clytia hemisphaerica|type=transcript|length=2780bpRun BLAST on NCBI protein sequence of TCONS_00060230-protein >TCONS_00060230-protein ID=TCONS_00060230-protein|Name=TCONS_00060230-protein|organism=Clytia hemisphaerica|type=polypeptide|length=309bp MAFDLVERVRKSFIDGLKDINWMDDITKMSAQHKAEAIIQKIGYPEYILKRun BLAST on NCBI transcript from alignment at scaffold_339:19964..27051+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060230 ID=TCONS_00060230|Name=TCONS_00060230|organism=Clytia hemisphaerica|type=transcript|length=7088bp|location=Sequence derived from alignment at scaffold_339:19964..27051+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_339:19964..27051+ >TCONS_00060230 ID=TCONS_00060230|Name=TCONS_00060230|organism=Clytia hemisphaerica|type=CDS|length=8370bp|location=Sequence derived from alignment at scaffold_339:19964..27051+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00060230 vs. Swiss-Prot (Human)
Match: ECE2 (Endothelin-converting enzyme 2 OS=Homo sapiens GN=ECE2 PE=1 SV=4) HSP 1 Score: 375.555 bits (963), Expect = 1.404e-114 Identity = 177/382 (46.34%), Postives = 253/382 (66.23%), Query Frame = 1 Query: 124 VNNYVVFHVLSAYSSFLTEDIIALRKNLTIASRGTYKK-LERWKRCVSVTDSAVGFALGSLFVKKSFKDDSHDMAFDLVERVRKSFIDGLKDINWMDDITKMSAQHKAEAIIQKIGYPEYILKPKELDESYKGLDFSETDYFLNVLTDQRWSIHNSLTQLRKPVDVRKWYMTPPTVNAYYEPTENEIVFPAGILQPPYFQSNYPKSVNFGMMGSIIGHEITHGFDNNGRQYDKHGNFVSSWWSASVVDEYKKKAKCFVDEYSKFKEAGKNIRGNETLGENIADNGGLKAAYRAYKEYTRSSGDEKRLPGVNLNNDQAFFVSFAQSWCTEELNQVLIHQVETDVHSPAIERVRGSVQNNRDFARVFNCPVGSHMNPKEKCEIW 1266 +NNY++++++ +S L + ++ L GT K + RW+ C+S TD A+GFALGSLFVK +F S ++A ++ +R +F + L + WMD+ T+ +A+ KA+AI IG+P++IL+PKELD+ Y G + SE +F N+L +S QLRKP +W MTP TVNAYY PT+NEIVFPAGILQ P++ N+PK++NFG +G ++GHE+TH FD+ GR+YDK GN + WW + ++ C ++Y++++ G+ + G +TLGENIADNGGLKAAY AYK + R G+E++LP V L N Q FFV FAQ WC+ + + TD HSPA RV G++ N+RDF R F CPVGS MNP + CE+W Sbjct: 503 LNNYLIWNLVQKTTSSLDRRFESAQEKLLETLYGTKKSCVPRWQTCISNTDDALGFALGSLFVKATFDRQSKEIAEGMISEIRTAFEEALGQLVWMDEKTRQAAKEKADAIYDMIGFPDFILEPKELDDVYDGYEISEDSFFQNMLNLYNFSAKVMADQLRKPPSRDQWSMTPQTVNAYYLPTKNEIVFPAGILQAPFYARNHPKALNFGGIGVVMGHELTHAFDDQGREYDKEGN-LRPWWQNESLAAFRNHTACMEEQYNQYQVNGERLNGRQTLGENIADNGGLKAAYNAYKAWLRKHGEEQQLPAVGLTNHQLFFVGFAQVWCSVRTPESSHEGLVTDPHSPARFRVLGTLSNSRDFLRHFGCPVGSPMNPGQLCEVW 883 The following BLAST results are available for this feature:
BLAST of TCONS_00060230 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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