TCONS_00060250 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060250
Unique NameTCONS_00060250
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1379

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060250 ID=TCONS_00060250|Name=TCONS_00060250|organism=Clytia hemisphaerica|type=transcript|length=1379bp
CTAGGTAGTTCCACAGGATTATTATTCCTCAGCTCATGAAAACTTACTTC
TTGCTTCTTAGGGTTGAAGATATCCAACACTCCAAAAGAAGAGAGCATTC
ATACTGAATTATTCACAAACTACAATGCAAATGTGAAACCGGATGGTTTG
ATCAACAATACTGTTCAAGTACATTTGGATGTCACCGTCCTCAAACTCTC
CTTCTTGgacATCAGATCGCAAGTTCTGTCGATCCAAACCTTCACCACCC
TGAGATGGTTTGACAAACGTTTGATGTGGGATCCAAAGGCACACCATGAC
ATAACACAAATATCTGTTCCCAATTCATTGCTCTGGACTCCTGATATCGT
CTTGTATAATGATGCAGATAACGATTATACAACACATAATGAAATTTACC
GAACGAACGTTCAAATCCATCATAAAGGTATGTTGACATGGACCTCAAAT
ATCGAGTGGAAAGCCAATTGCGAAGTAGACATCACCTGGTTCCCGCTTGA
TAAACAGGTTTGCAACTTGTTGTACGGTTCATTGTCATACACATCAGAGC
AATTATCTCTGGTACTTCGAGAGAAAGTCAGGAATATCGATGGTTTTGTG
AAAAGAGGAGATCGAAACTTCGTACAAAGTGGTGAATGGGACGTCAAAGA
CATCAACATCAAATCAGTGGAACAGAAATTCCCATGCTGTAGAGACAATT
TCTCTGCTCTTTCGTATACCGTAGCTTTGTCACGTTTCCCGCAATTCTAT
TTCTTGTATatgtttttcccgattttctcgcaattctttttgtttttgat
ggtttttcacATTAGACCCGAATCAGGTGAACGACTGGGTTTCGGAATCA
CTATTCTGCTAAACATCACAATGTTTATGACATTCATATCGGAAAAGCTT
CCCGAGAAATCGAACAACCGACCTCTTATTGGCCTGCTCTTCTCCGTTCT
CTTTTTCATCTATTCACTCGGACTCGCTCTAGCCTCTATGACTACATTCT
TCTCGTCCAGGCTAGGACCAGTCCCTCACTGGTTACGCAAGTTTGCTGCT
CCAGCTGCAACTGAAGAGGCTTTTATTGTTGAAAACCAAACCTCAGAAAA
CATTGAAGATGAGGAGATTAATACGACAAAAGATGGACCGAAAATCCAGA
CAATTAGTCGGGGATCCAATTCAGAGGTCACGTGGGCGATGGTAATGAGA
TCATTGGACAAATATCTCTTTTACATTTTCTTGGTCATTTCTGTATTGTT
ACCGATTATTATCGGTCTCTCCTTGGATCAGAACTTTTTTGCAggatgga
aaaatatttttaatgtttgaaaaaaatgaacaacgaattttaataaaaat
cgtGTGAAATATAATTCATGTAACACCCA
Run BLAST on NCBI

transcript from alignment at scaffold_339:270051..274157+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060250 ID=TCONS_00060250|Name=TCONS_00060250|organism=Clytia hemisphaerica|type=transcript|length=4107bp|location=Sequence derived from alignment at scaffold_339:270051..274157+ (Clytia hemisphaerica)
CTAGGTAGTTCCACAGGATTATTATTCCTCAGCTCATGAAAACTTACTTC
TTGCTTCTTAGGGTTGAAGATATCCAACACTCCAAAAGAAGAGAGCATTC
ATACTGAATTATTCACAAACTACAATGCAAATGTGAAACCGGATGGTTTG
ATCAACAATACTGTTCAAGTACATTTGGATGTCACCGTCCTCAAACTCTC
CTTCTTGGTAAGTGATCTTATCAACTCACTACTATGTTTGTTTGTTATAA
ATATGGGTAGGTTGATAAGGAACACCGTCATGGTGTCGGAAGGAAAAGAG
CGGACTGGAAACAAGGCATTCTTCCTAAATACAAGTCGGTATTGTCTGTA
TATTCATCATATTATTTTGACACGATCCTGATTAAAGGAAATCTGTTAAT
GCTTATCACAAGTcgattcttttcattttcaggacATCAGATCGCAAGTT
CTGTCGATCCAAACCTTCACCACCCTGGTAAGAAATTGtggtttttattc
aaaaatgaaTTGAAGTCGTTTTTATATTCGTGGAAACgttcttttttcat
aaaattccgTGATTCTGTAAACTGGTATTGATTTCTTATCCCAGAAAAAT
TTGGATCTTCCCATTTCAACCTTCTCGTCTTTTCTGACTGATAGAGATGG
TTTGACAAACGTTTGATGTGGGATCCAAAGGCACACCATGACATAACACA
AATATCTGTTCCCAATTCATTGCTCTGGACTCCTGATATCGTCTTGTATA
ATGAGTAAGTAGTATAAAGCCCCTGTCGTTGTGGCTTTNaatatttcttt
tcatctttctaATGATAACATTTCCAGCAAAGATTTCCTTCAAAAGATGA
CTATCGGGAGCAGAGAAGGGGAACCTTTTTACAAATACCGTTTATTTCAA
ATCTTTCATCTTAGTTTAAAAGTCATAagaagacatttttcaaaatgata
atttGAATCACTCAGATAAACGTTATTCTTGCTTCTTCCATACTTCCTCC
ATGTTTACGATAATTCCTCTAACCTCACAGCTCTTTTTTAACTGGAAAAG
TATGAAGCTTCAAGCTTTATGTTGGTCATTCTTGTTGTCATGGTTGCAAT
TTGCAGTCGGTAAGTATAACGGTTATCTTTCTTCCCCTAAACATGAACCA
CAAAAAACGTACGTACAACTTTTCTGGTAAGTAGTCAATAATCAATGCAA
CAAAGAGTTACATAAGTTTTTCACCGGACTTTGAAATATCGTTATAtcgt
ttttgaaatttccaaaatatatCAATATCTAGGTAGTTCCACAGAATTAT
TATTCCTCAGTTCATGAAAACTTACTTCTTGCTTCTTAGGGTTGAAGATG
TCCAACACTCCAAGGGAAGAGAGCATTCATACTGAACTGTTCACAAACTA
CAATGCAAATGTGAAACCGGATGGTTTAATCAACAATACTGTTCAAGTAC
ATTTGGATGTCACCGTCCTCAAACTCTCCTTCTTGGTAAGTGATCTTATC
AACCCACTACTATGTTTGATGGTTATAAATATGGGTAGGTTGATAAGGAA
CACCGTCATGGTGTCGGAAGGAAAAGAGCCATGGCGACTGGAAACAAGTC
TTCCTTTCTAAATACAAGTTGAATACAAGTCCTGCATTGTCTGTATGTTC
ATCATATTATTTTGACACGATCCTGATTAAAGGAAATCTGTTAATGCTTA
TCACAAGTcgattcttttcattttcaggacATCAGATCGCAAGTTCTGTC
GATCCAAACCTTCACCACCCTGGTAAGAAATTGtggtttttattcaaaaa
tgaaTTGAAGTCGTTTTTATATTCGTGGAAACgttcttttttcataaaat
tccgTGATTCTGTAAACTGGTATTGATTTCTTATCCCAGAAAAATTTGGA
TCTTCCCATTTCAACCTTCTCGTCTTTTCTGACTGATAGAGATGGTTTGA
CAAACGTTTGATGTGGGATCCAAAGGCACACCATGACATAACACAAATAT
CTGTTCCCAATTCATTGCTCTGGACTCCTGATATCGTCTTGTATAATGAG
TAAGTAGTATAAAGCCCCTGTCGTTGTGGCTTTATGCGTTAACTTGGGGA
GTTACTGGAAAAATCGGCCAACATGTCATCTCTGGAGGGAGTGTATTCTG
ATGGTCGCTGTGAGAAAGCTACAAAAAAAAGCATTGTTTGTGACAGGGGT
GTATCTGTTAAATAGCTCCTTTCTCAAGAAGCGAATCGTGGTGCAgcggt
agagcatccggctacggttatATCAAAGaatctcaaaatggtacttaatg
catctctgcttgatgctcaacaattaagagaaggatcaagggtaaatgga
gaaatccagggagaaagagtagCGCTcttccctaccttcgggtaaaGCTA
TCGAatgaggagccttcgggtcgcctcctaCTGTGGTTACAGACTTACTT
ACCTCTCAGGGGGTTACAGGGCATCCCCTTCGTCATTTCATCCCAAACAA
AGTAGCAGgtattcatttcatttcattttccaTCAAAATAAGGCTACAAC
TTTCTTTTACAGTGCAGATAACGATTATACAACACATAATGAAATTTACC
GAACGAACGTTCAAATCCATCATAAAGGTATGTTGACATGGACCTCAAAT
ATCGAGTGGAAAGCCAATTGCGAAGTAGACATCACCTGGTTCCCGCTTGA
TAAACAGGTAAGAACACCCTTATCACTGCAATATAATGATGGtgtatttt
tgatgactccATTGATTCTACTGGTTTTCTTGCAGAAGAATGTACTTATA
CTATGAATGTacaaaacaaatgaacaaagattttgtttatttcCAGGTTT
GCAACTTGTTGTACGGTTCATTGTCATACACATCAGAGCAATTATCTCTG
GTACTTCGAGAGAAAGTCAGGAATATCGATGGTTTTGTGAAAAGAGGAGG
TTAGTGCAGATAATAATTTCCAACCAGCTTTTTAAAAAACACAGTCTATG
TTAAAGtgctttttagaattttagaaTGTCTTGCGTAATACTTTACAGTG
TAGTTTCAGTTTTGGATCTTACGTAATTCAATCTCTAATATCTTTTTGTT
GAttacatcaggcagaaatctATATTTTATACAtggcaaatataaaaaaa
ttcactatggtcagagcccttaacttgaacctctataactcgaaaaaagT
TTCATGGTCCCTTTGTTATGCCTTTTAAACTATGAACTATAATTCGAAAT
TAtaataactcgaacaaatttgtgttcccccgtgcgtgttcgagttatgg
agacttcacTGTATAACAAACCCTGATCTATCTTTCAGATCGAAACTTCG
TACAAAGTGGTGAATGGGACGTCAAAGACATCAACATCAAATCAGTGGAA
CAGAAATTCCCATGCTGTAGAGACAATTTCTCTGCTCTTTCGTATACCGT
AGCTTTGTCACGTTTCCCGCAATTCTATTTCTTGTATatgtttttcccga
ttttctcgcaattctttttgtttttgatggtttttcacATTAGACCCGAA
TCAGGTGAACGACTGGGTTTCGGAATCACTATTCTGCTAAACATCACAAT
GTTTATGACATTCATATCGGAAAAGCTTCCCGAGAAATCGAACAACCGAC
CTCTTATTGGCCTGCTCTTCTCCGTTCTCTTTTTCATCTATTCACTCGGA
CTCGCTCTAGCCTCTATGACTACATTCTTCTCGTCCAGGCTAGGACCAGT
CCCTCACTGGTTACGCAAGTTTGCTGCTCCAGCTGCAACTGAAGAGGCTT
TTATTGTTGAAAACCAAACCTCAGAAAACATTGAAGATGAGGAGATTAAT
ACGACAAAAGATGGACCGAAAATCCAGACAATTAGTCGGGGATCCAATTC
AGAGGTCACGTGGGCGATGGTAATGAGATCATTGGACAAATATCTCTTTT
ACATTTTCTTGGTCATTTCTGTATTGTTACCGATTATTATCGGTCTCTCC
TTGGATCAGAACTTTTTTGCAggatggaaaaatatttttaatgtttgaaa
aaaatgaacaacgaattttaataaaaatcgtGTGAAATATAATTCATGTA
ACACCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037898XLOC_037898Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060250-exon-scaffold_339-1491911889:270051..270257TCONS_00060250-exon-scaffold_339-1491911889:270051..270257Clytia hemisphaericaexon
TCONS_00060250-exon-scaffold_339-1510915933:270051..270257TCONS_00060250-exon-scaffold_339-1510915933:270051..270257Clytia hemisphaericaexon
TCONS_00060250-exon-scaffold_339-1575043694:270051..270257TCONS_00060250-exon-scaffold_339-1575043694:270051..270257Clytia hemisphaericaexon
TCONS_00060250-exon-scaffold_339-1491911889:270483..270527TCONS_00060250-exon-scaffold_339-1491911889:270483..270527Clytia hemisphaericaexon
TCONS_00060250-exon-scaffold_339-1510915933:270483..270527TCONS_00060250-exon-scaffold_339-1510915933:270483..270527Clytia hemisphaericaexon
TCONS_00060250-exon-scaffold_339-1575043694:270483..270527TCONS_00060250-exon-scaffold_339-1575043694:270483..270527Clytia hemisphaericaexon
TCONS_00060250-exon-scaffold_339-1491911889:271990..272099TCONS_00060250-exon-scaffold_339-1491911889:271990..272099Clytia hemisphaericaexon
TCONS_00060250-exon-scaffold_339-1510915933:271990..272099TCONS_00060250-exon-scaffold_339-1510915933:271990..272099Clytia hemisphaericaexon
TCONS_00060250-exon-scaffold_339-1575043694:271990..272099TCONS_00060250-exon-scaffold_339-1575043694:271990..272099Clytia hemisphaericaexon
TCONS_00060250-exon-scaffold_339-1491911889:272613..272757TCONS_00060250-exon-scaffold_339-1491911889:272613..272757Clytia hemisphaericaexon
TCONS_00060250-exon-scaffold_339-1510915933:272613..272757TCONS_00060250-exon-scaffold_339-1510915933:272613..272757Clytia hemisphaericaexon
TCONS_00060250-exon-scaffold_339-1575043694:272613..272757TCONS_00060250-exon-scaffold_339-1575043694:272613..272757Clytia hemisphaericaexon
TCONS_00060250-exon-scaffold_339-1491911889:272897..272999TCONS_00060250-exon-scaffold_339-1491911889:272897..272999Clytia hemisphaericaexon
TCONS_00060250-exon-scaffold_339-1510915933:272897..272999TCONS_00060250-exon-scaffold_339-1510915933:272897..272999Clytia hemisphaericaexon
TCONS_00060250-exon-scaffold_339-1575043694:272897..272999TCONS_00060250-exon-scaffold_339-1575043694:272897..272999Clytia hemisphaericaexon
TCONS_00060250-exon-scaffold_339-1491911889:273389..274157TCONS_00060250-exon-scaffold_339-1491911889:273389..274157Clytia hemisphaericaexon
TCONS_00060250-exon-scaffold_339-1510915933:273389..274157TCONS_00060250-exon-scaffold_339-1510915933:273389..274157Clytia hemisphaericaexon
TCONS_00060250-exon-scaffold_339-1575043694:273389..274157TCONS_00060250-exon-scaffold_339-1575043694:273389..274157Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_339supercontigscaffold_339:270051..274157 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.0678873	0.0361825	0	0	0	0.02977	0.0987	0.146601	0	0	0	0.0623533	0.855121	1.35814	0	0	0.0160591	2.43148e-05	0	0.426819	0.0412202	0.0994787	1.02162	0.96126
Blast
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BLAST of TCONS_00060250 vs. Swiss-Prot (Human)
Match: ACHA6 (Neuronal acetylcholine receptor subunit alpha-6 OS=Homo sapiens GN=CHRNA6 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.980e-46
Identity = 95/320 (29.69%), Postives = 179/320 (55.94%), Query Frame = 1 
Query:   88 EESIHTELFTNYNANVKPDGLINNTVQVHLDVTVLKLSFLDIRSQVLSIQTFTTLRWFDKRLMWDPKAHHDITQISVPNSLLWTPDIVLYNDADNDYTTHNEIYRTNVQIHHKGMLTWTSNIEWKANCEVDITWFPLDKQVCNLLYGSLSYTSEQLSLVLREKVRNIDGFVKRGDRNFVQSGEWDVKDINIKSVEQKFPCCRDNFSALSYTVALSRFPQFYFLYMXXXXXXXXXXXLMVFHIRPESGERLGFGITILLNITMFMTFISEKLPEKSNNRPLIG--LLFSVLFFIYSLGLALASMTTFF-SSRLGPVPHWLR 1038
            EE +  +LF++YN  ++P   +++ V VH +V + +L+ +D  +Q++    +    W D +L WDP  +  I  + VP   +W PDIVLYN+A  D+       +T   + + GM+TWT    +K++C +DIT+FP D Q C+L +GS +Y   ++ L++      I   V   D  F ++ EW++ D +    + K+ CC + ++ ++Y+  + R P FY + +  P     FL ++VF++  + GE++   I++LL++T+F+  I+E +P  S   PL+G  LLF+++F   S+ + +  +   + +     +P W++
Sbjct:   34 EERLFHKLFSHYNQFIRPVENVSDPVTVHFEVAITQLANVDEVNQIMETNLWLRHIWNDYKLRWDPMEYDGIETLRVPADKIWKPDIVLYNNAVGDFQVEG---KTKALLKYNGMITWTPPAIFKSSCPMDITFFPFDHQNCSLKFGSWTYDKAEIDLLI------IGSKVDMND--FWENSEWEIIDASGYKHDIKYNCCEEIYTDITYSFYIRRLPMFYTINLIIPCLFISFLTVLVFYLPSDCGEKVTLCISVLLSLTVFLLVITETIPSTSLVVPLVGEYLLFTMIFVTLSIVVTVFVLNIHYRTPTTHTMPRWVK 342
The following BLAST results are available for this feature:
BLAST of TCONS_00060250 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACHA62.980e-4629.69Neuronal acetylcholine receptor subunit alpha-6 OS... [more]
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