TCONS_00060330 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060330
Unique NameTCONS_00060330
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length198

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060330 ID=TCONS_00060330|Name=TCONS_00060330|organism=Clytia hemisphaerica|type=transcript|length=198bp
AACCGAACGAAGCAGTTATGGAACCGGACGAAGTAAAATCAACGTCAGAC
CTGATGAATCGACACGAATCACTCCGTCTATTGATGTTAGTGGCCTGAAA
TTGCCCTCTGGAAAAAGCCCAAAAGGAAGACCAAAGGGGGCATCATTGAC
GGTCATAGGAAAAACAAGGAAAAGGAAATTTAATGcaaaagaTCAAAC
Run BLAST on NCBI

transcript from alignment at scaffold_340:117227..117964-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060330 ID=TCONS_00060330|Name=TCONS_00060330|organism=Clytia hemisphaerica|type=transcript|length=738bp|location=Sequence derived from alignment at scaffold_340:117227..117964- (Clytia hemisphaerica)
AACCGAACGAAGCAGTTATGGAACCGGACGAAGTAAAATCAACGTCAGAC
CTGATGAATCGACACGAATCACTCCGTCTATTGATGTTAGTGGCCTGAAA
TTGCCCTCTGGAAAAAGCCCAAAAGGAAGACCAAAGGGGGCATCATTGAC
GGTCATAGGAAAAACAAGGAAAAGGAAATTTAATGGTATTTATTATTTCT
ACAGCTGACGAATTAAACAAGTCTAAAATTTTTTAAAATTATTTCAAAAA
TCGAATTAACAATTAGAGACCCCTCCGTAAAAGCACATATTACCAGTGGA
TACCCTCTAAGTTTTTTTACGAAATTTTACGAACTTCGATTACACAAAGC
AACAGAATTATTATCAGCTGCTTATAATTCACCATAGCCAGCGAAGAAAA
CCGTAGACAGTTTATCTGTATTAGTAGGTTATATATTTTTTACTGATACT
TAAGAGGTACCCACTGACGTTTAGCTACTGGAAACACTTTTTATTAAAGA
ACCTTTATAAGAACACGAGGATCAATTTTTGCAATCAATTATGGCAAAAA
CCTAAGAATTCAGCCTGTTGAAAATCACGGCAATCTCGATCCTCACCCAA
AATTTACTGGTTCTCGTGTAAAACAAGCCAATTTGTCAACCCTAGTTCTT
TAAAATGAATAACGCTGTAGTCCGATCTGTTAGCGGCAAAATAAATAGTC
TAAATTACGATTGTATTTTTTTTAGCAAAAGATCAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037954XLOC_037954Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060330-exon-scaffold_340-1575043694:117780..117964TCONS_00060330-exon-scaffold_340-1575043694:117780..117964Clytia hemisphaericaexon
TCONS_00060330-exon-scaffold_340-1575043694:117227..117239TCONS_00060330-exon-scaffold_340-1575043694:117227..117239Clytia hemisphaericaexon
TCONS_00060330-exon-scaffold_340-1510915933:117780..117964TCONS_00060330-exon-scaffold_340-1510915933:117780..117964Clytia hemisphaericaexon
TCONS_00060330-exon-scaffold_340-1510915933:117227..117239TCONS_00060330-exon-scaffold_340-1510915933:117227..117239Clytia hemisphaericaexon
TCONS_00060330-exon-scaffold_340-1491911889:117780..117964TCONS_00060330-exon-scaffold_340-1491911889:117780..117964Clytia hemisphaericaexon
TCONS_00060330-exon-scaffold_340-1491911889:117227..117239TCONS_00060330-exon-scaffold_340-1491911889:117227..117239Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_340supercontigscaffold_340:117227..117964 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	2.20265	2.06209	0	0	1.73575	1.14101	1.13943	5.91653	0	0	0	0	0	0	0	0	0	0	27.5916	29.5498	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060330 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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