TCONS_00060334 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060334
Unique NameTCONS_00060334
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length607

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060334 ID=TCONS_00060334|Name=TCONS_00060334|organism=Clytia hemisphaerica|type=transcript|length=607bp
TCGGACTCTTCTTATCTTTTAAATCAACAAAAGATTAGGAAATGTGTAAA
ATATACATGGTAAAAATGACATAACAACTACTACATGTTTGGTACTTTCT
AAGATACATGCAACAAAAGATAGTATTGAGCGTTTTTGGAGTCTATACTT
TCATAATTTTGGAAACAAAGTTTTCGTTACAATCGAAGTTAATAACAAAC
TCTTCATCTGAGAGTAAAAACTGCTCCTCCAGCTCGTCTTCTGAACAACT
TGTTTGcaaatttgtgtaattttcTATAAAATGGGTCACGACCTCGTTAG
GCATACAAAGCCTGTAATCCTTCGAGTCAGTTCCACGGAATCCAATCGTA
ACGAACCATGATATAATAGATTTCGACTTGTGAGCGACAAATTCACATTT
AGAACATCTCACCTTAAAACCTTCCAAGATACCTTTCGATTTGCAAATGG
AGCATTTGTATGTCAATTTGATCGAATTCACCCCACGTATGGTGACAGTC
ATTTCTTTGGAACTCGCTGCTCCAATGTCTTCATATGTTTTGGTGTTCTT
CATTGCTTCTGTTTCCTTGAAGGTGAATTTCTCATTTTTCGGAGTGTTGA
GGTACCT
Run BLAST on NCBI

protein sequence of TCONS_00060334-protein

>TCONS_00060334-protein ID=TCONS_00060334-protein|Name=TCONS_00060334-protein|organism=Clytia hemisphaerica|type=polypeptide|length=154bp
RYLNTPKNEKFTFKETEAMKNTKTYEDIGAASSKEMTVTIRGVNSIKLTY
KCSICKSKGILEGFKVRCSKCEFVAHKSKSIISWFVTIGFRGTDSKDYRL
CMPNEVVTHFIENYTNLQTSCSEDELEEQFLLSDEEFVINFDCNENFVSK
IMKV
Run BLAST on NCBI

transcript from alignment at scaffold_340:15799..16405

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060334 ID=TCONS_00060334|Name=TCONS_00060334|organism=Clytia hemisphaerica|type=transcript|length=607bp|location=Sequence derived from alignment at scaffold_340:15799..16405 (Clytia hemisphaerica)
AGGTACCTCAACACTCCGAAAAATGAGAAATTCACCTTCAAGGAAACAGA
AGCAATGAAGAACACCAAAACATATGAAGACATTGGAGCAGCGAGTTCCA
AAGAAATGACTGTCACCATACGTGGGGTGAATTCGATCAAATTGACATAC
AAATGCTCCATTTGCAAATCGAAAGGTATCTTGGAAGGTTTTAAGGTGAG
ATGTTCTAAATGTGAATTTGTCGCTCACAAGTCGAAATCTATTATATCAT
GGTTCGTTACGATTGGATTCCGTGGAACTGACTCGAAGGATTACAGGCTT
TGTATGCCTAACGAGGTCGTGACCCATTTTATAgaaaattacacaaattt
gCAAACAAGTTGTTCAGAAGACGAGCTGGAGGAGCAGTTTTTACTCTCAG
ATGAAGAGTTTGTTATTAACTTCGATTGTAACGAAAACTTTGTTTCCAAA
ATTATGAAAGTATAGACTCCAAAAACGCTCAATACTATCTTTTGTTGCAT
GTATCTTAGAAAGTACCAAACATGTAGTAGTTGTTATGTCATTTTTACCA
TGTATATTTTACACATTTCCTAATCTTTTGTTGATTTAAAAGATAAGAAG
AGTCCGA

Coding sequence (CDS) from alignment at scaffold_340:15799..16405

>TCONS_00060334 ID=TCONS_00060334|Name=TCONS_00060334|organism=Clytia hemisphaerica|type=CDS|length=465bp|location=Sequence derived from alignment at scaffold_340:15799..16405 (Clytia hemisphaerica)
AGGTACCTCAACACTCCGAAAAATGAGAAATTCACCTTCAAGGAAACAGA
AGCAATGAAGAACACCAAAACATATGAAGACATTGGAGCAGCGAGTTCCA
AAGAAATGACTGTCACCATACGTGGGGTGAATTCGATCAAATTGACATAC
AAATGCTCCATTTGCAAATCGAAAGGTATCTTGGAAGGTTTTAAGGTGAG
ATGTTCTAAATGTGAATTTGTCGCTCACAAGTCGAAATCTATTATATCAT
GGTTCGTTACGATTGGATTCCGTGGAACTGACTCGAAGGATTACAGGCTT
TGTATGCCTAACGAGGTCGTGACCCATTTTATAgaaaattacacaaattt
gCAAACAAGTTGTTCAGAAGACGAGCTGGAGGAGCAGTTTTTACTCTCAG
ATGAAGAGTTTGTTATTAACTTCGATTGTAACGAAAACTTTGTTTCCAAA
ATTATGAAAGTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037957XLOC_037957Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060334-exon-scaffold_340-1491911889:15799..16405TCONS_00060334-exon-scaffold_340-1491911889:15799..16405Clytia hemisphaericaexon
TCONS_00060334-exon-scaffold_340-1510915933:15799..16405TCONS_00060334-exon-scaffold_340-1510915933:15799..16405Clytia hemisphaericaexon
TCONS_00060334-exon-scaffold_340-1575043694:15799..16405TCONS_00060334-exon-scaffold_340-1575043694:15799..16405Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060334-proteinTCONS_00060334-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_340supercontigscaffold_340:15799..16405 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.802261	0.521554	0.201858	0.197486	0.12021	0.0949918	0.458414	0.107291	0.826283	0.279132	0.451554	1.0686	0.237137	0.369404	0.202467	0.162958	0.133834	0.205764	0	0	0.0861857	0.378345	0.102206	0.464602	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060334 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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