TCONS_00060346 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060346
Unique NameTCONS_00060346
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length754

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060346 ID=TCONS_00060346|Name=TCONS_00060346|organism=Clytia hemisphaerica|type=transcript|length=754bp
NNTTATGCAATTTGTTTCAAACTATTCAGTGCAaaaagatgttttgaaaa
aacgtAAGAAGCCAGTTATTGTTAGAGCCTTCCCAACACCATCATTTGAT
CCAAAAGGACCtaatttttatgtattttgcaAATACCAACTGCTAAAATA
CAAACCATGGAGGACCAGGATTAGTGATGCTTGGGATGGTTTAAGTGAGA
ATGATACTGATATGTTTTGCCAAAAATGGAATGAGTTTTTGCAAACTGAT
TTAGGTCAAAGTGTTGTCCCTAATTGGAGAAGAGAATTTAATAAGGCTGA
ATTATATTTTGAAAGGTCAGAAACTGATGAGTTTGAAGAGAATGTTGAAG
GGGAACGTGAAGAATGGATGCACTTAGCTGATTTATGTGGGAATAACAAC
GAAATTAATCGAGATGAGCCATCTCATAACGATTTAGAATATTGGCAGTC
TTGTAGAAATAACTACACTGAAGAGCAGATTGGAAATATGGTTTCTTGGC
TTGACAAAAGAAAAGCCAAAATATCTGAGAACCCAGTTGAACAAGTGTTT
GAACTAAAAGTAGACTCCCTTAATGAGTCgcaaagaaaagcatttgatat
ATTATTAGATCAGGATATGAATCAGAGAGATCAGCTATTCATGATGATTA
CCGGGTTAGCAGGGAGTGGAAAAAGTTACTCAATTAATAACATTagagct
ttactgaaagagAAATGTATTGTATCAGCCTACTTTGGAATAGCTGCATT
TAAT
Run BLAST on NCBI

protein sequence of TCONS_00060346-protein

>TCONS_00060346-protein ID=TCONS_00060346-protein|Name=TCONS_00060346-protein|organism=Clytia hemisphaerica|type=polypeptide|length=251bp
XMQFVSNYSVQKDVLKKRKKPVIVRAFPTPSFDPKGPNFYVFCKYQLLKY
KPWRTRISDAWDGLSENDTDMFCQKWNEFLQTDLGQSVVPNWRREFNKAE
LYFERSETDEFEENVEGEREEWMHLADLCGNNNEINRDEPSHNDLEYWQS
CRNNYTEEQIGNMVSWLDKRKAKISENPVEQVFELKVDSLNESQRKAFDI
LLDQDMNQRDQLFMMITGLAGSGKSYSINNIRALLKEKCIVSAYFGIAAF
N
Run BLAST on NCBI

transcript from alignment at scaffold_340:147871..148624

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060346 ID=TCONS_00060346|Name=TCONS_00060346|organism=Clytia hemisphaerica|type=transcript|length=754bp|location=Sequence derived from alignment at scaffold_340:147871..148624 (Clytia hemisphaerica)
ATTAAATGCAGCTATTCCAAAGTAGGCTGATACAATACATTTctctttca
gtaaagctctAATGTTATTAATTGAGTAACTTTTTCCACTCCCTGCTAAC
CCGGTAATCATCATGAATAGCTGATCTCTCTGATTCATATCCTGATCTAA
TAATatatcaaatgcttttctttgcGACTCATTAAGGGAGTCTACTTTTA
GTTCAAACACTTGTTCAACTGGGTTCTCAGATATTTTGGCTTTTCTTTTG
TCAAGCCAAGAAACCATATTTCCAATCTGCTCTTCAGTGTAGTTATTTCT
ACAAGACTGCCAATATTCTAAATCGTTATGAGATGGCTCATCTCGATTAA
TTTCGTTGTTATTCCCACATAAATCAGCTAAGTGCATCCATTCTTCACGT
TCCCCTTCAACATTCTCTTCAAACTCATCAGTTTCTGACCTTTCAAAATA
TAATTCAGCCTTATTAAATTCTCTTCTCCAATTAGGGACAACACTTTGAC
CTAAATCAGTTTGCAAAAACTCATTCCATTTTTGGCAAAACATATCAGTA
TCATTCTCACTTAAACCATCCCAAGCATCACTAATCCTGGTCCTCCATGG
TTTGTATTTTAGCAGTTGGTATTtgcaaaatacataaaaattaGGTCCTT
TTGGATCAAATGATGGTGTTGGGAAGGCTCTAACAATAACTGGCTTCTTa
cgttttttcaaaacatcttttTGCACTGAATAGTTTGAAACAAATTGCAT
AANN

Coding sequence (CDS) from alignment at scaffold_340:147871..148624

>TCONS_00060346 ID=TCONS_00060346|Name=TCONS_00060346|organism=Clytia hemisphaerica|type=CDS|length=753bp|location=Sequence derived from alignment at scaffold_340:147871..148624 (Clytia hemisphaerica)
ATTAAATGCAGCTATTCCAAAGTAGGCTGATACAATACATTTctctttca
gtaaagctctAATGTTATTAATTGAGTAACTTTTTCCACTCCCTGCTAAC
CCGGTAATCATCATGAATAGCTGATCTCTCTGATTCATATCCTGATCTAA
TAATatatcaaatgcttttctttgcGACTCATTAAGGGAGTCTACTTTTA
GTTCAAACACTTGTTCAACTGGGTTCTCAGATATTTTGGCTTTTCTTTTG
TCAAGCCAAGAAACCATATTTCCAATCTGCTCTTCAGTGTAGTTATTTCT
ACAAGACTGCCAATATTCTAAATCGTTATGAGATGGCTCATCTCGATTAA
TTTCGTTGTTATTCCCACATAAATCAGCTAAGTGCATCCATTCTTCACGT
TCCCCTTCAACATTCTCTTCAAACTCATCAGTTTCTGACCTTTCAAAATA
TAATTCAGCCTTATTAAATTCTCTTCTCCAATTAGGGACAACACTTTGAC
CTAAATCAGTTTGCAAAAACTCATTCCATTTTTGGCAAAACATATCAGTA
TCATTCTCACTTAAACCATCCCAAGCATCACTAATCCTGGTCCTCCATGG
TTTGTATTTTAGCAGTTGGTATTtgcaaaatacataaaaattaGGTCCTT
TTGGATCAAATGATGGTGTTGGGAAGGCTCTAACAATAACTGGCTTCTTa
cgttttttcaaaacatcttttTGCACTGAATAGTTTGAAACAAATTGCAT
AAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037969XLOC_037969Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060346-exon-scaffold_340-1491911889:147871..148624TCONS_00060346-exon-scaffold_340-1491911889:147871..148624Clytia hemisphaericaexon
TCONS_00060346-exon-scaffold_340-1510915933:147871..148624TCONS_00060346-exon-scaffold_340-1510915933:147871..148624Clytia hemisphaericaexon
TCONS_00060346-exon-scaffold_340-1575043694:147871..148624TCONS_00060346-exon-scaffold_340-1575043694:147871..148624Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060346-proteinTCONS_00060346-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_340supercontigscaffold_340:147871..148624 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.650065	0.424866	0.265801	0.310811	0.734821	0	0.321887	1.03631	1.28536	1.46908	0	1.78072	1.10904	1.39314	0.638105	0.681102	0.851471	0.385664	0.828827	0.94545	1.07567	1.26365	0.228722	0.344631	0.240088	0.383717	1.57515	0.305818	0.380965	0.745606
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060346 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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