|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060591 ID=TCONS_00060591|Name=TCONS_00060591|organism=Clytia hemisphaerica|type=transcript|length=1452bpRun BLAST on NCBI protein sequence of TCONS_00060591-protein >TCONS_00060591-protein ID=TCONS_00060591-protein|Name=TCONS_00060591-protein|organism=Clytia hemisphaerica|type=polypeptide|length=249bp RLQKEIIQKNKILLLQEKQVKEKNTTMDDIGLRMNNKEKWYGDAATYWQKRun BLAST on NCBI transcript from alignment at scaffold_345:89034..111985- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060591 ID=TCONS_00060591|Name=TCONS_00060591|organism=Clytia hemisphaerica|type=transcript|length=22952bp|location=Sequence derived from alignment at scaffold_345:89034..111985- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_345:89034..111985- >TCONS_00060591 ID=TCONS_00060591|Name=TCONS_00060591|organism=Clytia hemisphaerica|type=CDS|length=6000bp|location=Sequence derived from alignment at scaffold_345:89034..111985- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00060591 vs. Swiss-Prot (Human)
Match: NTM1A (N-terminal Xaa-Pro-Lys N-methyltransferase 1 OS=Homo sapiens GN=NTMT1 PE=1 SV=3) HSP 1 Score: 172.17 bits (435), Expect = 1.065e-49 Identity = 84/214 (39.25%), Postives = 124/214 (57.94%), Query Frame = 2
Query: 101 MNNKEKWYGDAATYWQKVDPSIDGMLQGFEHVSPVDVKGSSNFIKKLKNEKILTTDCHRAADFGAGIGRVTKLCLLKHFKVVDIIEQCENFTNNIVKYMNDDSLASRIENIFTIGAQSFIPSAGHYDLIWMQWFVGHFTDDDFVAVLQNCKRGLREGGCIVIKDNVASKEPVLDEDDSSVTRTHDQFLKIFSDAGLELRQEADQKGLPSTLFTV 742
+ +++++Y A TYW+++ P++DGML G+ H+S +D+ S F+++ E T A D GAGIGR+TK LL F+ VD+++ E+F Y+ ++ R+ N F G Q F P YD+IW+QW +GH TD L+ CK LR G IVIKDN+A + +LD+ DSSV R D +I AGL L E Q+ LP ++ V
Sbjct: 6 IEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEE--GKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQENLPDEIYHV 217 The following BLAST results are available for this feature:
BLAST of TCONS_00060591 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.