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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060611 ID=TCONS_00060611|Name=TCONS_00060611|organism=Clytia hemisphaerica|type=transcript|length=777bp
ATTTATGGAAAACCCCAAGTGTTGAAGTACAAATATGAGGGTGTCCCTGG
CCATCAGGAGTTCCTCTATCGATGAGGCCATCAATAGGCAGTCGTCCAAA
TAAATAATTAGGCGAACGTTCAGCCGTCTTAACAAAGCTATAGGAATCTT
CATCAATTTGGTAAAAATCCTTGGCGCAGGACCCAGGCCAAAACAAAGGC
ATAGAAACTCGTATATTTTCCCTTTCCAACGAAAACTTACATACTTCCGA
GAAAGATTGTGAAGGGGGACGCTGAAGTATGCGTCTCGCAAGTCTAATTT
GACCATAAAATCTCCCTTTACCAGCAGTTCTTTCAGTAGCCCCAAAGTTT
CCATTTTGAAGTGAAGATAGGGAACatatttgtttagatttttcagattg
aTGACTGGCCTGTGTCCTGAATCTGATTTTGGTACCAGGAAGATTGAACT
TAGGAAGCGGTTTGGAGAAGGGGATTGTACTTTTTGTATTGCACCCTTTT
GTAGCATTTTCTGGATCTCTGCTTCTATGAACAACTCTTCCTCCCATTTC
ATGGGAGGTTGATGGGGAAATTTGTTCTGAACAGGTACGGATGTGAATGG
TATCTTGTAGCCATTCACCACTTGCAGAATTGCCGGGTCCTGAGTTAGGA
CTTCCTAGTTCTggctgaaaaatttcaatttcccgGCAGGAAGTAAGTTT
GGAATTAACTGCTGGGGAAATAAACCTTTTACTGAGGGATGAACATGGGA
CAAAAGATGTTGATTTCCCAAGTCTNN Run BLAST on NCBI protein sequence of TCONS_00060611-protein >TCONS_00060611-protein ID=TCONS_00060611-protein|Name=TCONS_00060611-protein|organism=Clytia hemisphaerica|type=polypeptide|length=258bp
RLGKSTSFVPCSSLSKRFISPAVNSKLTSCREIEIFQPELGSPNSGPGNS
ASGEWLQDTIHIRTCSEQISPSTSHEMGGRVVHRSRDPENATKGCNTKST
IPFSKPLPKFNLPGTKIRFRTQASHQSEKSKQICSLSSLQNGNFGATERT
AGKGRFYGQIRLARRILQRPPSQSFSEVCKFSLERENIRVSMPLFWPGSC
AKDFYQIDEDSYSFVKTAERSPNYLFGRLPIDGLIDRGTPDGQGHPHICT
STLGVFHK Run BLAST on NCBI transcript from alignment at scaffold_345:262623..263399 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060611 ID=TCONS_00060611|Name=TCONS_00060611|organism=Clytia hemisphaerica|type=transcript|length=777bp|location=Sequence derived from alignment at scaffold_345:262623..263399 (Clytia hemisphaerica)
NNAGACTTGGGAAATCAACATCTTTTGTCCCATGTTCATCCCTCAGTAAA
AGGTTTATTTCCCCAGCAGTTAATTCCAAACTTACTTCCTGCcgggaaat
tgaaatttttcagccAGAACTAGGAAGTCCTAACTCAGGACCCGGCAATT
CTGCAAGTGGTGAATGGCTACAAGATACCATTCACATCCGTACCTGTTCA
GAACAAATTTCCCCATCAACCTCCCATGAAATGGGAGGAAGAGTTGTTCA
TAGAAGCAGAGATCCAGAAAATGCTACAAAAGGGTGCAATACAAAAAGTA
CAATCCCCTTCTCCAAACCGCTTCCTAAGTTCAATCTTCCTGGTACCAAA
ATCAGATTCAGGACACAGGCCAGTCAtcaatctgaaaaatctaaacaaat
atGTTCCCTATCTTCACTTCAAAATGGAAACTTTGGGGCTACTGAAAGAA
CTGCTGGTAAAGGGAGATTTTATGGTCAAATTAGACTTGCGAGACGCATA
CTTCAGCGTCCCCCTTCACAATCTTTCTCGGAAGTATGTAAGTTTTCGTT
GGAAAGGGAAAATATACGAGTTTCTATGCCTTTGTTTTGGCCTGGGTCCT
GCGCCAAGGATTTTTACCAAATTGATGAAGATTCCTATAGCTTTGTTAAG
ACGGCTGAACGTTCGCCTAATTATTTATTTGGACGACTGCCTATTGATGG
CCTCATCGATAGAGGAACTCCTGATGGCCAGGGACACCCTCATATTTGTA
CTTCAACACTTGGGGTTTTCCATAAAT Coding sequence (CDS) from alignment at scaffold_345:262623..263399 >TCONS_00060611 ID=TCONS_00060611|Name=TCONS_00060611|organism=Clytia hemisphaerica|type=CDS|length=774bp|location=Sequence derived from alignment at scaffold_345:262623..263399 (Clytia hemisphaerica)
AGACTTGGGAAATCAACATCTTTTGTCCCATGTTCATCCCTCAGTAAAAG
GTTTATTTCCCCAGCAGTTAATTCCAAACTTACTTCCTGCcgggaaattg
aaatttttcagccAGAACTAGGAAGTCCTAACTCAGGACCCGGCAATTCT
GCAAGTGGTGAATGGCTACAAGATACCATTCACATCCGTACCTGTTCAGA
ACAAATTTCCCCATCAACCTCCCATGAAATGGGAGGAAGAGTTGTTCATA
GAAGCAGAGATCCAGAAAATGCTACAAAAGGGTGCAATACAAAAAGTACA
ATCCCCTTCTCCAAACCGCTTCCTAAGTTCAATCTTCCTGGTACCAAAAT
CAGATTCAGGACACAGGCCAGTCAtcaatctgaaaaatctaaacaaatat
GTTCCCTATCTTCACTTCAAAATGGAAACTTTGGGGCTACTGAAAGAACT
GCTGGTAAAGGGAGATTTTATGGTCAAATTAGACTTGCGAGACGCATACT
TCAGCGTCCCCCTTCACAATCTTTCTCGGAAGTATGTAAGTTTTCGTTGG
AAAGGGAAAATATACGAGTTTCTATGCCTTTGTTTTGGCCTGGGTCCTGC
GCCAAGGATTTTTACCAAATTGATGAAGATTCCTATAGCTTTGTTAAGAC
GGCTGAACGTTCGCCTAATTATTTATTTGGACGACTGCCTATTGATGGCC
TCATCGATAGAGGAACTCCTGATGGCCAGGGACACCCTCATATTTGTACT
TCAACACTTGGGGTTTTCCATAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060611-exon-scaffold_345-1491911889:262623..263399 | TCONS_00060611-exon-scaffold_345-1491911889:262623..263399 | Clytia hemisphaerica | exon |
| TCONS_00060611-exon-scaffold_345-1510915933:262623..263399 | TCONS_00060611-exon-scaffold_345-1510915933:262623..263399 | Clytia hemisphaerica | exon |
| TCONS_00060611-exon-scaffold_345-1575043694:262623..263399 | TCONS_00060611-exon-scaffold_345-1575043694:262623..263399 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_345 | supercontig | scaffold_345:262623..263399 . |
Blast
The following BLAST results are available for this feature:
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