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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060617 ID=TCONS_00060617|Name=TCONS_00060617|organism=Clytia hemisphaerica|type=transcript|length=2133bp
cgaaagtttatcccgtTAAAGTAGGCGAATTTTGAAACAATAACCGTAAA
ATAACCTTGCTTATCAAAAGCAAtataaactaaaacttaaaattGTTCTA
AACAGAAAGTAGTTGGTATGtcataatttttatcaaattgttGGAAAGAT
CatgaaattttgagtaaaattttGCTTGCCATTCCTATTAGtttagcaag
ctagacgactaattcaaacaaagtagaaaaaaaagcaaaaagtaatggag
ggaacaaattttaacCGCGAAACCCGCGAAATTTTATTCCATTAAAGTAG
CTTCAGTAAAACAATACAACACAATTAATGAAAATATCATGTCAAAACAG
ATTTGATTTACTTACAAACAGAAATTTTGTCTctaaaatttatatataat
tATTGTCAGGATACCATTGTCTGTTAGTTTAACAATCAATTCACTATGTT
TTACACTTCTGTGTTAATTAAAAGTCACTCCCGCCCGACGCCCTACTCGA
AATCCTCATTTAAAACCAGTTACAGTTTCCCCGTACAATGGCTTTGTTTT
TAACGAATTTCAAATTAAACATGTCTGTTTATATATTCGTATCACAAATg
gtatctttttaaaacatctCGCAGAATATGCATTGGGATGCTTTGTCAAT
TTATAGAAGTTGGCCTCGAATTTAAGTGCTGTGTGATCTGCCCGATGGGT
TAATATTATATATGTTTTAATTTTCCTCAACAATAGATTCTTTCGACAAA
AAGTGGTAATTTTGCGATGGACTTTGATACATATTCTTCAGGGCTGCCAA
AACTGTGATCAAATCCACTGTTTTGTCGGGCTGTCCAGACTTTCCTTTAA
AAATCTTTGCTCTGTTCGAAGCATCACGGTCCCATTTCCAAATAAGTTCC
CATACCATTGAACCTTTCAAAGCATACTCCTCTTTGACACAATAGATGTC
ACCGTCAACAGGCCTTTTTCCCTGTACCGTGGCTAAGATTCCAAATCGAG
CATACCCAGCGGGGCAAGTTGGCCTCCAAAATGCTTGATTACCAAACATC
CAGAAACTTTCGTAAGAGATTGGTACTTTGAATATATCGGTATCGCTGGG
GTTGACTGGGCTAAGGACATAATTGCCAGTTATTGTGTTATCCACTTTCG
GAAATATGAATATATCGCCTAGCCGATACTCCCCAGCTTTGACGTCCAAC
CGATAAATGTGCAAATCAGCCCACTGAAGAATTGGTGTTGTGGAGGTAGC
TTTGCGAATCTTTAGTTTCTTCTTATCTTAAAAAAGCAAGCAAAATCCGA
TTGGCTAAATATCAAGCATTTTTAACTCTTCGTGCATTTTGGGCAGGGCA
AAGCTGGTTTTCGCCTGTTCCGATATTGCCatcaccatgtcaataagctc
agaatgatttcaatgactgtagtctgctTGCACTCAAAAAGATTGCCATT
GAGGCTAAACAAAATCACTTTAACGGGTTCCTTGGTCCAAGAATCAGTTA
CTGATTGCATGTGAAGAGCCTTCTTTTTAAGGTGTATCCACCAAAATGTT
TCTTAAGCATTCGAAAGAACATCCCGGTAGTAAAAACTTTCCACTTTGAT
TATGATAAAGCCTCCAGTGTAAAGTTTCTGTGCATCTTTTCTGCTGGTAT
GGAATTTTCTCATCCAAGCGATTTTCCTTATAcggcgacgaggtggccga
gtggttaaggcgatggactgctaatccattgggctctgcccgcgtgggtt
cgaaaaAGTCTGGTTTAGACTtcattcagcctttgttttgaaattaaggA
CCCGTCTACATTaagcaattataatttttaccTTGGCTTACCCGCTGTTT
TTAGACCTACCACGGATGTCCTTTATTTTAACCTtttgtttgttcgtccg
ttcatCTGTTACCATTTTTTCTCGAGgttggctcattattttttttctga
tattttgcataatgattttttgtaagaataccttatatcagggtgaaaat
tggccaaatcgtaagaataccctctaaGTTTCACAGATTGTGATGAGAAT
AAAGTCACTTtctatttggttaacagaaaaaaagtttgaagcaGAATTTT
AATTTTAGCTCCCAATGTGCACTCAAAAGTCTC Run BLAST on NCBI protein sequence of TCONS_00060617-protein >TCONS_00060617-protein ID=TCONS_00060617-protein|Name=TCONS_00060617-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
MFGNQAFWRPTCPAGYARFGILATVQGKRPVDGDIYCVKEEYALKGSMVW
ELIWKWDRDASNRAKIFKGKSGQPDKTVDLITVLAALKNMYQSPSQNYHF
LSKESIVEEN Run BLAST on NCBI transcript from alignment at scaffold_346:77548..79680 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060617 ID=TCONS_00060617|Name=TCONS_00060617|organism=Clytia hemisphaerica|type=transcript|length=2133bp|location=Sequence derived from alignment at scaffold_346:77548..79680 (Clytia hemisphaerica)
GAGACTTTTGAGTGCACATTGGGAGCTAAAATTAAAATTCtgcttcaaac
tttttttctgttaaccaaatagaAAGTGACTTTATTCTCATCACAATCTG
TGAAACttagagggtattcttacgatttggccaattttcaccctgatata
aggtattcttacaaaaaatcattatgcaaaatatcagaaaaaaaataatg
agccaacCTCGAGAAAAAATGGTAACAGatgaacggacgaacaaacaaaA
GGTTAAAATAAAGGACATCCGTGGTAGGTCTAAAAACAGCGGGTAAGCCA
AggtaaaaattataattgcttAATGTAGACGGGTccttaatttcaaaaca
aaggctgaatgaAGTCTAAACCAGACTttttcgaacccacgcgggcagag
cccaatggattagcagtccatcgccttaaccactcggccacctcgtcgcc
gTATAAGGAAAATCGCTTGGATGAGAAAATTCCATACCAGCAGAAAAGAT
GCACAGAAACTTTACACTGGAGGCTTTATCATAATCAAAGTGGAAAGTTT
TTACTACCGGGATGTTCTTTCGAATGCTTAAGAAACATTTTGGTGGATAC
ACCTTAAAAAGAAGGCTCTTCACATGCAATCAGTAACTGATTCTTGGACC
AAGGAACCCGTTAAAGTGATTTTGTTTAGCCTCAATGGCAATCTTTTTGA
GTGCAagcagactacagtcattgaaatcattctgagcttattgacatggt
gatGGCAATATCGGAACAGGCGAAAACCAGCTTTGCCCTGCCCAAAATGC
ACGAAGAGTTAAAAATGCTTGATATTTAGCCAATCGGATTTTGCTTGCTT
TTTTAAGATAAGAAGAAACTAAAGATTCGCAAAGCTACCTCCACAACACC
AATTCTTCAGTGGGCTGATTTGCACATTTATCGGTTGGACGTCAAAGCTG
GGGAGTATCGGCTAGGCGATATATTCATATTTCCGAAAGTGGATAACACA
ATAACTGGCAATTATGTCCTTAGCCCAGTCAACCCCAGCGATACCGATAT
ATTCAAAGTACCAATCTCTTACGAAAGTTTCTGGATGTTTGGTAATCAAG
CATTTTGGAGGCCAACTTGCCCCGCTGGGTATGCTCGATTTGGAATCTTA
GCCACGGTACAGGGAAAAAGGCCTGTTGACGGTGACATCTATTGTGTCAA
AGAGGAGTATGCTTTGAAAGGTTCAATGGTATGGGAACTTATTTGGAAAT
GGGACCGTGATGCTTCGAACAGAGCAAAGATTTTTAAAGGAAAGTCTGGA
CAGCCCGACAAAACAGTGGATTTGATCACAGTTTTGGCAGCCCTGAAGAA
TATGTATCAAAGTCCATCGCAAAATTACCACTTTTTGTCGAAAGAATCTA
TTGTTGAGGAAAATTAAAACATATATAATATTAACCCATCGGGCAGATCA
CACAGCACTTAAATTCGAGGCCAACTTCTATAAATTGACAAAGCATCCCA
ATGCATATTCTGCGagatgttttaaaaagataccATTTGTGATACGAATA
TATAAACAGACATGTTTAATTTGAAATTCGTTAAAAACAAAGCCATTGTA
CGGGGAAACTGTAACTGGTTTTAAATGAGGATTTCGAGTAGGGCGTCGGG
CGGGAGTGACTTTTAATTAACACAGAAGTGTAAAACATAGTGAATTGATT
GTTAAACTAACAGACAATGGTATCCTGACAATaattatatataaatttta
gAGACAAAATTTCTGTTTGTAAGTAAATCAAATCTGTTTTGACATGATAT
TTTCATTAATTGTGTTGTATTGTTTTACTGAAGCTACTTTAATGGAATAA
AATTTCGCGGGTTTCGCGgttaaaatttgttccctccattactttttgct
tttttttctactttgtttgaattagtcgtctagcttgctaaaCTAATAGG
AATGGCAAGCaaaattttactcaaaatttcatGATCTTTCCaacaatttg
ataaaaattatgaCATACCAACTACTTTCTGTTTAGAACaattttaagtt
ttagtttataTTGCTTTTGATAAGCAAGGTTATTTTACGGTTATTGTTTC
AAAATTCGCCTACTTTAacgggataaactttcg Coding sequence (CDS) from alignment at scaffold_346:77548..79680 >TCONS_00060617 ID=TCONS_00060617|Name=TCONS_00060617|organism=Clytia hemisphaerica|type=CDS|length=333bp|location=Sequence derived from alignment at scaffold_346:77548..79680 (Clytia hemisphaerica)
ATGTTTGGTAATCAAGCATTTTGGAGGCCAACTTGCCCCGCTGGGTATGC
TCGATTTGGAATCTTAGCCACGGTACAGGGAAAAAGGCCTGTTGACGGTG
ACATCTATTGTGTCAAAGAGGAGTATGCTTTGAAAGGTTCAATGGTATGG
GAACTTATTTGGAAATGGGACCGTGATGCTTCGAACAGAGCAAAGATTTT
TAAAGGAAAGTCTGGACAGCCCGACAAAACAGTGGATTTGATCACAGTTT
TGGCAGCCCTGAAGAATATGTATCAAAGTCCATCGCAAAATTACCACTTT
TTGTCGAAAGAATCTATTGTTGAGGAAAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060617-exon-scaffold_346-1491911889:77548..79680 | TCONS_00060617-exon-scaffold_346-1491911889:77548..79680 | Clytia hemisphaerica | exon |
| TCONS_00060617-exon-scaffold_346-1510915933:77548..79680 | TCONS_00060617-exon-scaffold_346-1510915933:77548..79680 | Clytia hemisphaerica | exon |
| TCONS_00060617-exon-scaffold_346-1575043694:77548..79680 | TCONS_00060617-exon-scaffold_346-1575043694:77548..79680 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_346 | supercontig | scaffold_346:77548..79680 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR009291 | Vps62 |
Blast
The following BLAST results are available for this feature:
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