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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060657 ID=TCONS_00060657|Name=TCONS_00060657|organism=Clytia hemisphaerica|type=transcript|length=1130bp
AGTACGTGTAAATAACATTTGCTAGTGCTTTTAAGTGTGGTTATTCAAGC
TATAATAGGCAAAGTGCGACATTCTATCATCATGGCTAGATTTGTTCTAT
CAATATCTTTGGTGGTTCTTCTATTTGGTATAACTCTCGGAGAACAGATT
CGTCCGACTCCAGTGATCCACAGATGCCCTACAGCAAAGCAGAAGTGGAG
ATATTGTGGCGGAGAGAGATATGATCGAGTTGCAGAATTTTGTTGTGATG
GTGTGAAACTGGCAAAAGAACCTTTCAAACGGTGCTGTGGAAAGCGTCTT
TATGATATCGAATCAGAGCGTTGTCGAAATGGTTTCGTCTTGATCAAGGA
AAAGAGGTGCAGAGGACGAACCTACGATCCTAAGGATAGTTTTTGCCACC
GATGCCAAGTGTTCTCCCATAATGAGTTTGTGTATTGCGATGGCAGCCTT
TATCCTAAGACATCCCGAAAACAAATTTAAAGATCCCTTATGATACCTTC
GAAATTCATTTACCATCGTATCAATCAATACCAAGTCACGTGACGTTGTA
TGGATGAATTATtttgtttgcaaaataaattattatgaaaatttaaaaat
tattcatAAGACAAGTATTGTGTTAGTAAAACTTTCTGTATCCAAGAATT
TATAATTTCTTATGGAGTATATTTCAAATCTTTTAAGATTTGCATGTAAT
AAGATTATAAGATTTCTGAAATTACTTATCAAATTTTGTCCCGGTGGGGG
TGGGGCACTCGATtagaaaacgaccatacgtgcggcctaaaattaggcct
ttgaagtcagacccttacagtgcaaagaaaatttagccaaatttgagtaa
atttgtgcaaaaaaacttcccttacggtgcattttctttaAGATATTTGA
CCGTTTTTAGGCACGATATGGTCAAATTTTACTCCTTAGAGTGtactttt
ctcatctttgctcattttgaCCCTTACTGTGCATTTTGGTAAGCTTGGAG
AAgggacccttaagggccgcacgtacggtaggtcgtttaACTTGAGTGGC
CCCCCTCCACGGAATTTATCCCTTGTAAAGAAGATATTTAATTAAATAAA
GAAACATAAACCAGAAACATCTGAATACCA Run BLAST on NCBI protein sequence of TCONS_00060657-protein >TCONS_00060657-protein ID=TCONS_00060657-protein|Name=TCONS_00060657-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
MARFVLSISLVVLLFGITLGEQIRPTPVIHRCPTAKQKWRYCGGERYDRV
AEFCCDGVKLAKEPFKRCCGKRLYDIESERCRNGFVLIKEKRCRGRTYDP
KDSFCHRCQVFSHNEFVYCDGSLYPKTSRKQI Run BLAST on NCBI transcript from alignment at scaffold_348:485779..487594+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060657 ID=TCONS_00060657|Name=TCONS_00060657|organism=Clytia hemisphaerica|type=transcript|length=1816bp|location=Sequence derived from alignment at scaffold_348:485779..487594+ (Clytia hemisphaerica)
AGTACGTGTAAATAACATTTGCTAGTGCTTTTAAGTGTGGTTATTCAAGC
TATAATAGGCAAAGTGCGACATTCTATCATCATGGCTAGATTTGTTCTAT
CAATATCTTTGGTGGTTCTTCTATTTGGTATAACTCTCGGAGAACAGATT
CGTCCGACTCCAGTGATCCACAGATGCCCTACAGCAAAGCAGAAGTGGAG
ATATTGTAAGATAACCTTTCAGTATTTGCCAATCACGTGAATGTAGCACA
AGAACCACAGGCGGCTTTTTGCTGTTGAAGACTCTACCGACTGTTTATTT
GCTATCCGCAACTACATCGAGGTTTTTGTGATACATGATATACTGTTCTA
CTGTTCTTTGGTGGATAACTTTCACGACATTTGCAAATTCTTTCCACTTT
TACGCGATTTTTGCCAGAGGACATTGATTGGTAAAATTTAGTCTACACAA
AAGTTTTAAATCTAAAATAGGGACTCTCCTAAGGCTTCAGACGGTTAAGt
tttgaataacttttaatTGTATAGCTTTTTGTGCACATGNGGCTTCAGAC
GGTTAAGTTTTGAATAACTTTAAATTGTATAGCTTTTTTCGCACATTTTT
GTAGGTGGCGGAGAGAGATATGATCGAGTTGCAGAATTTTGTTGTGATGG
TGTGAAACTGGCAAAAGAACCTTTCAAACGGTGCTGTGGGTGAGTTAATG
TTTGTAAGAATCATTTTCTTTAGCTTTTAGAATCAAACCACTAATTCCCA
ATATCaagatgtttgtttttaatgtttcatTACGATATNagctggcacac
aacgttgtttcaacgttcatctaacgttatatggacgttgtgaacgttag
ataaacgttgaaacaacgttgtgtgccagctgggttagcTTTTAGAATTA
AACCACTAATTCGCAATATCaagatgtttgtttttaatgtttcatTACGA
TATATTTCGAATTATTACAATTTCAGAAAGCGTCTTTATGATATCGAATC
AGAGCGTTGTCGAAATGGTTTCGTCTTGATCAAGGAAAAGAGGTGCAGAG
GACGAACCTACGATCCTAAGGATAGTTTTTGCCACCGATGCCAAGTGTTC
TCCCATAATGAGTTTGTGTATTGCGATGGCAGCCTTTATCCTAAGACATC
CCGAAAACAAATTTAAAGATCCCTTATGATACCTTCGAAATTCATTTACC
ATCGTATCAATCAATACCAAGTCACGTGACGTTGTATGGATGAATTATtt
tgtttgcaaaataaattattatgaaaatttaaaaattattcatAAGACAA
GTATTGTGTTAGTAAAACTTTCTGTATCCAAGAATTTATAATTTCTTATG
GAGTATATTTCAAATCTTTTAAGATTTGCATGTAATAAGATTATAAGATT
TCTGAAATTACTTATCAAATTTTGTCCCGGTGGGGGTGGGGCACTCGATt
agaaaacgaccatacgtgcggcctaaaattaggcctttgaagtcagaccc
ttacagtgcaaagaaaatttagccaaatttgagtaaatttgtgcaaaaaa
acttcccttacggtgcattttctttaAGATATTTGACCGTTTTTAGGCAC
GATATGGTCAAATTTTACTCCTTAGAGTGtacttttctcatctttgctca
ttttgaCCCTTACTGTGCATTTTGGTAAGCTTGGAGAAgggacccttaag
ggccgcacgtacggtaggtcgtttaACTTGAGTGGCCCCCCTCCACGGAA
TTTATCCCTTGTAAAGAAGATATTTAATTAAATAAAGAAACATAAACCAG
AAACATCTGAATACCA Coding sequence (CDS) from alignment at scaffold_348:485779..487594+ >TCONS_00060657 ID=TCONS_00060657|Name=TCONS_00060657|organism=Clytia hemisphaerica|type=CDS|length=1197bp|location=Sequence derived from alignment at scaffold_348:485779..487594+ (Clytia hemisphaerica)
ATGGCTAGATTTGTTCTATCAATATCTTTGGTGGTTCTTCTATTTGGTAT
AACTCTCGGAGAACAGATTCGTCCGACTCCAGTGATCCACAGATGCCCTA
CAGCAAAGCAGAAGTGGAGATATTGTGGCGGAGAGAGATATGATCGAGTT
GCAGAATTTTGTTGTGATGGTGTGAAACTGGCAAAAGAACCTTTCAAACG
GTGCTGTGGAAAGCGTCTTTATGATATCGAATCAGAGCGTTGTCGAAATG
GTTTCGTCTTGATCAAGGAAAAGAGGTGCAGAGGACGAACCTACGATCCT
AAGGATAGTTTTTGCCACCGATGCCAAGTGTTCTCCCATAATGAGTTTGT
GTATTGCGATGGCAGCCTTTATCCTAAGACATCCCGAAAACAAATTTAAA
TGGCTAGATTTGTTCTATCAATATCTTTGGTGGTTCTTCTATTTGGTATA
ACTCTCGGAGAACAGATTCGTCCGACTCCAGTGATCCACAGATGCCCTAC
AGCAAAGCAGAAGTGGAGATATTGTGGCGGAGAGAGATATGATCGAGTTG
CAGAATTTTGTTGTGATGGTGTGAAACTGGCAAAAGAACCTTTCAAACGG
TGCTGTGGAAAGCGTCTTTATGATATCGAATCAGAGCGTTGTCGAAATGG
TTTCGTCTTGATCAAGGAAAAGAGGTGCAGAGGACGAACCTACGATCCTA
AGGATAGTTTTTGCCACCGATGCCAAGTGTTCTCCCATAATGAGTTTGTG
TATTGCGATGGCAGCCTTTATCCTAAGACATCCCGAAAACAAATTTAAAT
GGCTAGATTTGTTCTATCAATATCTTTGGTGGTTCTTCTATTTGGTATAA
CTCTCGGAGAACAGATTCGTCCGACTCCAGTGATCCACAGATGCCCTACA
GCAAAGCAGAAGTGGAGATATTGTGGCGGAGAGAGATATGATCGAGTTGC
AGAATTTTGTTGTGATGGTGTGAAACTGGCAAAAGAACCTTTCAAACGGT
GCTGTGGAAAGCGTCTTTATGATATCGAATCAGAGCGTTGTCGAAATGGT
TTCGTCTTGATCAAGGAAAAGAGGTGCAGAGGACGAACCTACGATCCTAA
GGATAGTTTTTGCCACCGATGCCAAGTGTTCTCCCATAATGAGTTTGTGT
ATTGCGATGGCAGCCTTTATCCTAAGACATCCCGAAAACAAATTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060657-exon-scaffold_348-1491911889:485779..485983 | TCONS_00060657-exon-scaffold_348-1491911889:485779..485983 | Clytia hemisphaerica | exon |
| TCONS_00060657-exon-scaffold_348-1510915933:485779..485983 | TCONS_00060657-exon-scaffold_348-1510915933:485779..485983 | Clytia hemisphaerica | exon |
| TCONS_00060657-exon-scaffold_348-1575043694:485779..485983 | TCONS_00060657-exon-scaffold_348-1575043694:485779..485983 | Clytia hemisphaerica | exon |
| TCONS_00060657-exon-scaffold_348-1491911889:486383..486467 | TCONS_00060657-exon-scaffold_348-1491911889:486383..486467 | Clytia hemisphaerica | exon |
| TCONS_00060657-exon-scaffold_348-1510915933:486383..486467 | TCONS_00060657-exon-scaffold_348-1510915933:486383..486467 | Clytia hemisphaerica | exon |
| TCONS_00060657-exon-scaffold_348-1575043694:486383..486467 | TCONS_00060657-exon-scaffold_348-1575043694:486383..486467 | Clytia hemisphaerica | exon |
| TCONS_00060657-exon-scaffold_348-1491911889:486755..487594 | TCONS_00060657-exon-scaffold_348-1491911889:486755..487594 | Clytia hemisphaerica | exon |
| TCONS_00060657-exon-scaffold_348-1510915933:486755..487594 | TCONS_00060657-exon-scaffold_348-1510915933:486755..487594 | Clytia hemisphaerica | exon |
| TCONS_00060657-exon-scaffold_348-1575043694:486755..487594 | TCONS_00060657-exon-scaffold_348-1575043694:486755..487594 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_348 | supercontig | scaffold_348:485779..487594 + |
Blast
The following BLAST results are available for this feature:
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