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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060856 ID=TCONS_00060856|Name=TCONS_00060856|organism=Clytia hemisphaerica|type=transcript|length=2214bpRun BLAST on NCBI transcript from alignment at scaffold_349:479095..499378- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060856 ID=TCONS_00060856|Name=TCONS_00060856|organism=Clytia hemisphaerica|type=transcript|length=20284bp|location=Sequence derived from alignment at scaffold_349:479095..499378- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00060856 vs. Swiss-Prot (Human)
Match: SVEP1 (Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 OS=Homo sapiens GN=SVEP1 PE=1 SV=3) HSP 1 Score: 144.436 bits (363), Expect = 3.403e-35 Identity = 113/402 (28.11%), Postives = 166/402 (41.29%), Query Frame = 2
Query: 92 CTCRKGFE--------------RKPNNPYGCQDINECLTN-NGGCDHNCH---DYQGGHYCSCKVGFRLREDSKSCEELYCPVLEAPYHGHVTPATCSKKYENIAVGSTCKFECSKGFELKTNVGAQTLSCRIDGTWDHGTPNCHPVKCPTLQRPINGGLVPARCHDDQRGYNEFGQRCVAYCRHGYRLRGAPTKY-CQADKSWSNNNGALECVKIVEPPYINCPTDVQAVLPDNSNSMSLASKFRLPQTNVNSS---SIVTYPGNVGPDYKFRFGKTLVSYVANHVTGETVSCSYFVDIKDKTPPTVQNCPTDINVQTTSKLSTIITWTEPKFTDNVGVRRIMRPQRKPGQAWYPGEEMTILYLATDVAGNQARCSFRVTVKTKYCP-ELTSTNPDHMITP 1228
C CR+G+ + P N Y Q N C + N C CH D G C C CP L P HGH++ +T Y+ +TC C +G+ L+ G+ L+C+ + WD P C C T Q P + + P C +FG C CR G+ L G C W+ A C K VE P INCP D++A + +S ++ +++P NS S+ +P P Y F G + Y A ++G SC + + + D PP + C + VQ + K+ +W EP+F+DN G ++ G +P E + Y ATD +GN C + +K C T N D + TP
Sbjct: 360 CVCREGYRASGQTCELVHCPALKPPENGYFIQ--NTCNNHFNAACGVRCHPGFDLVGSSIILCLPNGLWSGSESYCRVRTCPHLRQPKHGHISCSTREMLYK-----TTCLVACDEGYRLE---GSDKLTCQGNSQWDGPEPRCVERHCSTFQMPKDVIISPHNCGKQPA---KFGTICYVSCRQGFILSGVKEMLRCTTSGKWNVGVQAAVC-KDVEAPQINCPKDIEAKTLEQQDSANVT--WQIPTAKDNSGEKVSVHVHPA-FTPPYLFPIGDVAIVYTATDLSGNQASCIFHIKVIDAEPPVIDWCRSPPPVQVSEKVHA-ASWDEPQFSDNSGAELVITRSHTQGDL-FPQGETIVQYTATDPSGNNRTCDIHIVIKGSPCEIPFTPVNGDFICTP 742 HSP 2 Score: 92.4337 bits (228), Expect = 5.755e-19 Identity = 101/413 (24.46%), Postives = 158/413 (38.26%), Query Frame = 2
Query: 32 CGSGNGGCEQM----CNNTLGGYMCTCRKGFERK---------PNNPYGCQDINECLTNNGGCDHNCHDYQGGHY----CSCKVGFRLREDSKSCEELYCPVLEAPYHGHVTPATCSKKYENIAVGSTCKFECSKGFELKTNVGAQTLSCRIDGTWDHGTPNCHPVKCPTLQRPINGGLVPARCHDDQRGYNEFGQRCVAYCRHGYRLRGAPTKYCQADKSWSNNNGALECVKIVEPPYINCPTDVQAVLPDNSNSMSLASKFRLPQTNVNSSSIVTYPGNVGPDYKFRFG--------KTLVSYVANHVTGETVSCSYFVDI-----KDKTPPTVQNCPTDINVQTTSKL-STIITWTEPKFTDNVG--VRRIMRPQRKPGQAWYPGEEMTILYLATDVAGNQARCSFRVTV 1171
C G C++M C G + C C KG+ K P+ Y + +++ C H G C C+ G+ R ++CE ++CP L+ P +G+ TC+ + + C C GF+L VG+ + C +G W C CP L++P +G + C + Y C+ C GYRL G+ CQ + W P+ S F++P+ ++ P N G +FG + + + T S + V + KD P + NCP DI +T + S +TW P DN G V + P P +P ++ I+Y ATD++GNQA C F + V
Sbjct: 281 CDEGKDCCDRMGSCKCGTHTGHFECICEKGYYGKGLQYECTACPSGTYKPEGSPGGISSCIPCPDENHTSPPGSTSPEDCVCREGY--RASGQTCELVHCPALKPPENGYFIQNTCNNHFN-----AACGVRCHPGFDL---VGSSIILCLPNGLWSGSESYCRVRTCPHLRQPKHGHI---SCSTREMLYK---TTCLVACDEGYRLEGSDKLTCQGNSQWDG--------------------------PEPRCVERHCSTFQMPK------DVIISPHNCG-KQPAKFGTICYVSCRQGFILSGVKEMLRCTTSGKWNVGVQAAVCKDVEAPQI-NCPKDIEAKTLEQQDSANVTWQIPTAKDNSGEKVSVHVHPAFTP-PYLFPIGDVAIVYTATDLSGNQASCIFHIKV 642 The following BLAST results are available for this feature:
BLAST of TCONS_00060856 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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