TCONS_00060860 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060860
Unique NameTCONS_00060860
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1817

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060860 ID=TCONS_00060860|Name=TCONS_00060860|organism=Clytia hemisphaerica|type=transcript|length=1817bp
GAATTTGTTGGCGTTCAAATGTATGGCAAAGGAATTTTATCGATGTGTGA
AGTTGTTGTTGCTTCAAGATTAGGTGCGATGGCTGATTGGTGCCAAATTG
AAAACGGTGGCTGTGAACATCTTTGTCACAACAAATGTGGAAGAGAGACA
TCGTGTAGCTGTCTACCTGGATATAGTCTGGCATATGATGGCAAGTCCTG
TATTGacATCAATGAATGTTTATCGAACAATGGAGGTTGCAGAGTTGACA
AACAAGCTCGTTGCATTAACTACCCTGGTGGATTCTACTGTGGTTGCAAT
AGAGGATATATTCTTGCTGATAACAGTTTGACTGAGTGTGTTGATTTGAA
CGAGTGCGGATCAGGGAATGGAGGTTGTGAACAGATGTGTAATAACACCC
TTGGTGGATACATGTGCACGTGTAGAAAGGGCTTTGAACGAAAACCAAAC
AATCCTTATGGATGCCAAGATATCAATGAATGTTTGACTAATAATGGTGG
ATGTGATCACAATTGCCATGACTACCAAGGTGGCCATTATTGTTCGTGTA
AGGTTGGATTCCGTCTCCGAGAAGATAGCAAATCATGCGAAGAGCTCTAT
TGTCCAGTGCTTGAAGCTCCATATCATGGTCACGTGACACCAGCCACGTG
TTCaaagaaatatgaaaacatTGCAGTGGGGAGCACGTGTAAATTCGAAT
GTTCTAAAGGATTCGAATTAAAGACCAATGTGGGTGCACAAACATTGTCG
TGTCGCATTGACGGTACATGGGATCATGGTACACCAAATTGCCACCCTGT
CAAATGTCCCACCCTTCAGCGTCCGATCAACGGAGGTCTGGTACCGGCCC
GTTGTCATGACGATCAGCGTGGTTACAACGAGTTCGGTCAGCGGTGTGTA
GCGTATTGTCGCCATGGATACCGGTTGAGAGGCGCACCAACGAAATATTG
TCAAGCTGATAAGTCATGGTCAAACAATAACGGAGCTCTAGAATGTGTCA
AGATTGTCGAGCCACCGTACATAAATTGCCCAACAGACGTGCAAGCTGTA
CTCCCTGATAACAGCAACTCAATGAGCCTGGCCTCCAAATTCCGACTTCC
GCAAACAAACGTCAACTCATCATCAATCGTTACGTATCCCGGTAATGTGG
GACCGGATTACAAATTCCGATTCGGGAAAACTTTGGTCTCGTATGTCGCT
AATCATGTTACTGGGGAGACTGTTTCTTGCTCGTATTTTGTTGATATTAA
AGATAAAACACCACCAACTGTACAGAACTGTCCAACCGACATCAACGTTC
AGACAACATCCAAACTAAGTACCATCATAACATGGACAGAACCAAAATTC
ACCGATAATGTTGGTGTTCGGAGAATCATGAGACCGCAACGCAAACCCGG
ACAAGCCTGGTATCCTGGTGAAGAAATGACTATTTTGTATTTGGCAACTG
ATGTTGCTGGCAATCAGGCTAGATGTAGCTTCAGAGTGACTGTTAAAACT
AAATACTGTCCCGAATTGACATCCACCAACCCGGATCACATGATCACACC
GTATTCACCCCGACAATCATACGGTGTACAATGTAAAGCAGGGAAGGCGT
TATTCGGTAACTTCAACCCGATGAGTAACATGGTGATGTGTGTTGGTGGA
CGGTATCGAATCGAAGCAACTTTCATTGATCACTCACTACCTGATTGTGT
CTCTTCATACAACTTGAGACAAGCTACAGATCAATGTTCTGAAGGGTACG
AAAGGAAAATCTTTGACGATTTCTGGATGGGTAAAACTTACTTCTGTGCC
ATGTGTCCATCTGGAAC
Run BLAST on NCBI

transcript from alignment at scaffold_349:488520..502508-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060860 ID=TCONS_00060860|Name=TCONS_00060860|organism=Clytia hemisphaerica|type=transcript|length=13989bp|location=Sequence derived from alignment at scaffold_349:488520..502508- (Clytia hemisphaerica)
GAATTTGTTGGCGTTCAAATGTATGGCAAAGGAATTTTATCGATGTGTGA
AGTTGTTGTTGCTTCAAGATTAGGTAAAAGTTTTAAGTATTTAGACTTAT
GAATGAGTTTTTTGTGACACCCATCCCTTGACAATTTGTTGGCGTTGGCG
TTCTAACGCATGGCATAGGAATATGAAAGATGTTTTTTCGATGCTATATT
CTGTTGACAGTTTGTTGGGTTTTAATGTGTATACGATGGGGGAACGGATT
TGATATTTTTTGTCGGTGTTTCGGTGTGAATTTTTGGATCTTACACTACT
GGTGTTGTTTGTGACGATGTTTCAGTGTTTACGACCTTCGTAGGCCATTA
ATATTTTTTATTAGTGCGTGAGTTTTGTTTAGATCGGCTCTGCCATCAGC
ATATTAGAGGTTTTCAGTGACCGGTCACTTCATTAACTTTTATACAGTCA
ATTCTCTCTTATTCGAATCTTTCTGTAATTCGAACTAAATAAAGCATTTA
TCTTCTCAGCTAGAAAGTAGTTTAAAAACACTCCATAATTTGAATCTTTC
TCTAATTCGAAAAAAATATGTTAGCCCCTTGAAGATTGAATTGTAGAAGA
GCAAATGTATCATAATTTCATATTAAAGGTGCGATGGCTGATTGGTGCCA
AATTGAAAACGGTGGCTGTGAACATCTTTGTCACAACAAATGTGGAAGAG
AGACATCGTGTAGCTGTCTACCTGGATATAGTCTGGCATATGATGGCAAG
TCCTGTATTGGTAAGTTATCAGTTCCTTAATCGGGTCCTTAAACGGGTCC
TTAATCGGGAAATCGGGTTTTTGTTATAGCAGGTTATAGAGGTTTTTCAT
GTTTTTTAAGTTCCGTCATTGGTAGCCTATACTAGACGTCACCCGCATTT
TTTCTACGCAATTAACGTCTATTCCACTTTGCTACTCTTTGACGTCATTT
TTAATTTTCGAAGTCCCTGCAGTAGCTAAAAAATGAAATTTGCGTCAAAA
CACTTGAAAGGCTTCCATTTTTCAAAAATCGTCAAAGTGGAACTCACTAG
GAAACGGGATGAAAAATCCCGATTTTTGGAGAGGTGCTCGCTATCATTAT
GAAAGCAAACGTTCGATTTGCATAAGGGGTCACATCTACAGATTCGAACG
TTTGCTTTCATAATGGCGGGAATTACGTAACTTAACAAAACACAAACAAC
CTCCAAGCAAACTTTCGAATTGCGTAAGGGATCACCTCTACAAATTCGAA
CGTTTGCTTTCATAATGGCGGGAATTACGTAACTTAACAAAACACAAACA
ACCTCCAAGCAAACTTTCGAATTGCGTAAGGGATCACCTCTACAAATTCG
AACGTTTGCTTTCATAATGGCGGAATTTAGGTAACTTAAGGGCTCTGACC
ATAGTCAGAAAATTGATTTTAGTATCTGAAACATAAAAGTTATGTTTTAG
ATTCTTTAACACTTTTAACAAAGAATTGCCTTNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGAGCCCTTAA
CAAAACACAAACATTCGATTTGCGTAAGGGGATCACCTTTACAAATTCGA
ACGTTTGCTTCCATAATGGCGGGAATTACGTAACTTAACAAAACACAAAC
AACCTCCAAGCAAACTTTCGAATTGCGTAAGGGATCACCTCTACAAATTC
GAACGTTTGCTTTCATAATGGCGGAAATTAGGTAACTTAACCAAACATGA
AAAACCTCTATAGAGGTTTCTTTTGTTGAAAATACATATACAAATACATA
CCCTACAATTGACTGACACATCATTTTCAAAATTTATTTATTTTGCTTTC
CCAGCATAGGGTGCATCCATATAATACGTACGCAAAATTTATCCAAATAT
TGGATTACCCCTTCCCCCCTTGTACGCAGAGAACAATAGAAATGACGTCA
TTTAGACAATAGACGTACACTTTTGCGAAGTCCCCTTCTCTCCCCTTCAC
TGCGTACGTACTATTATGTGGATGGCCCCTAGAGGCGCGCCTCTTTTCTA
TATCATAAAGCAATCTATTATCAAAAACAGTTTGTCCCAAAAAAGCGGAC
AAATATTTTTATTTTAGAAAAGTTTCCAAGCTGCACACAACGTTTGTTCA
ACGTTCATCTAACGTTATATGGATGTTGTGAACGTTAGATAGACGTTGAA
ACAACGTTTTGTGTCAGCTGGGTTTTTTTTTGTACTTACCTGAATCCGAT
AAATTAACCTTTAAATTCGTTCATTTTTAACTTTCGCTTTCGTTTTCAGA
CATCAATGAATGTTTATCGAACAATGGAGGTTGCAGAGTTGACAAACAAG
CTCGTTGCATTAACTACCCTGGTGGATTCTACTGTGGTTGCAATAGAGGA
TATATTCTTGCTGATAACAGTTTGACTGAGTGTGTTGGTAAGTTATCGGG
AAAATTGAGTTTCCTTTTTCGGGATGCAGATCGTTTATCGGGGAACCATT
CGGTAGAAACAAGCTCGTTGCATTAACTACCCTGGTGGTTCTTACTGTGG
TTGCAATAGATGATATATTCTTGCTGATAGCAGTTTGACTGAGTGTGTTG
GTAAGTTATCGGGGAAATCGGGTTACTTTCTTCGGGATACAAATGGTTGA
TCGGGGAACCATTCGATAGAACAAGCTCATTGCAATAGAGGATATATTCT
TGCTGATAACAGTTTGACGGAGTGTATTGGTAAGTTATCGGGGAAATTGG
GTTACTTTTTTCGGGAATCAAATGGTTGATCGGGGAACCATTCCATAGAA
ACAAGTTTGTTGCATTAACTACCCTGGTGGATTCTACTGTGGTTGCAATA
GAGGATATATTCTTGCTGATAACAGTTTGACTGAGTGTGTCGGTAAGTTA
TCGGGAAAATCGGGTTACTTTTTTCGGGATACAAATGGTTGATCGGGAAA
CAATACGGGACAAACAAACTCATTGCATAACAATCCCAGTGGATTCTACT
GTGGTTGTAATAGAGGATATATTCTTGCTGATAACAGTTTGACTGAGTGT
GTCGGTAAGTTATCGGGAATGTTTTTCATGTTGGCATGTTAAGTTACGTA
ACTTCCGCCATCATGGAAGCAAACGTTCGAATATGTAGAGGTGATCTCTT
ACACAAATGGAACGTTTGCTTCCATAATGGCTGAAATTATGTAACTTAAC
AAAAAATAAAAAAACTCTATATATGGATGATCGTATTAACTATTCATATG
GGTCACACCTGTGAATATAGCAGAAGATATATTCTCGATGGTGACACTTT
AATAAAAATATACTCTTAGGCTCCAAATAAACGGACTCCCCCCCGTTTAT
TAAAATCTCGAAAATTTTCCAACCCGGGGGGGGGGGGGGTTCGTTTATTC
GACCCCCTGTTTATTTGGAAACTTAGAGTAATAAAGTTGATATAATGTTG
ATAGTAAATTAATAATATAATAATGATAACAATGATATCTTCAAGTGACA
TATGGTAAGTTGCACACGTCGTACGTAAGCACCAGAAGTAATAAGGCTCC
ATTTACATTTTACAGATTTGAACGAGTGCGGATCAGGGAATGGAGGTTGT
GAACAGATGTGTAATAACACCCTTGGTGGATACATGTGCACGTGTAGAAA
GGGCTTTGAACGAAAACCAAACAATCCTTATGGATGCCAAGGTAAACCTT
GTACCTTATCGGGGAAAAAATGTCGGGAGGAAAGTGACGAAATATTTCCC
CGACGAAATATTTCCCCGACATTTTATCACCTGACTAAAACTTGTTTACC
TCAAATTTTATACCGCAACCAAAATTCAAATCTAATTTTCTTACACCTTT
ATTTACCGAAATTAGTGCTTTAAACGTCGAATTACAAGATCTATTTTCGA
GCTAGTGAAAAAAACCAATTCTTTTGCACAGTTTAGTCGAGGAAAAGTGA
CGAAAATGCCTCTAGGTGACGAAATTTTTCCCCGACGAAAAAAAAACCCA
ACTAAATAAAACTCCGACATTTTTTCCCCGATAAGGTATATTCTATGTTC
TCAACTGGCACACAACGTCGTTTGATATTGAGCTTCCAAAAGCGCAAAAA
CTGGACAAAACAGCTGTTTCTGGCTGAAAACACTGTTTTTAAGGGCTACT
GAATAGTCCTTTGATTACTTTTTTTCTGACTTCAATTTTTTTCACACTTT
CCTTTTTCAAGATATCAATGAATGTTTGACTAATAATGGTGGATGTGATC
ACAATTGCCATGACTACCAAGGTGGCCATTATTGTTCGTGTAAGGTTGGA
TTCCGTCTCCGAGAAGATAGCAAATCATGCGAAGGTAACATCCTAGCTGA
CATGCAACATCGTTTCAACGTTTATCTGATGTTCACAACGTCCATATAAC
GTTAGATGAACGTTGAAACAATCTTGTTTGTTTGTGGAGTCGTTTATATT
TAATGCAATAATAATGGTGTTGCGGAATCGTTGCGGAATAATATCAGTTT
GTATATTATTTGTTCCGTTCATCAGTGCCGTAGGAAGCATTTTCATATTG
AGGGGGCTGAAGTTTAGTGACACCATGGTTTGGTCCGAGGCTGAGGGGAG
GGGGGATTTTGAAAATTTGAGCTCTAGATTGCTTGAAAATGCACCCAAAA
CAAAATACTTTCGAGAAAAAACAAAATTAAAAAAGAAAAATTTGCATTTT
GCAAAATAACCATTTTTGAAAAAAATTATTGGGGGGGGGCTAGCCCCCCT
TGCCTCCCAGCTGCTACGGCACTGTTTATTGGTTTTGCTTAATATGTCTG
TTATGTTTGAATTAGTTATCTAGCATACTTGTGACTACCTTGTATGCGCG
CATACTTCTGTCTAAATTGGAGTTCGTTCGTTCTTCCCCTTGTCATTTAT
TAACTGTTACAGTATGTGTCCAATTTTTTAACATATGGCTTAGTTTTTGT
GGGTTCATTTTTATAATGTCATTAACTCTTACTGTTAACAATTTTTCACT
TAGAATCGAATAGTTTCCTTTCCCTCTGTCATATTATACCTTAAGGGAAC
TATTTTTTGCGGGAACTAATTTTTGCGGTTCGCAGTTCAAGATTTAATTT
TTAATATTTGCGGGAACTTAATTTTGCGGATTTCTGACTTGAAAAAAATT
AGAGCCGTACTGTGAATCATTCGACCTTCGTTTTTTGCATATGAAAAATT
TTGCGGGGACTTAATTTTACGGTTTAGGCCTAAATCCGCAAAAACCGCAA
AATTTAGTTCACGCAAAAATTAGTTCCCTTAAGGTAATACCGAGTTTATG
TATCGGAGGATATCGAGGGCGACGGTAAGTGAAATCGATACAAAACAAAG
TCAATAGTTGATGTACGGCTCTATATTGCTTTTACTCACCTAAACAGACG
ACGGTATTTTGGTGTTTTTACCGTCGTCGGGCAAAGTGGACGTTGATTTT
GGAGACATGTCAACTTTGCTTTATACCGTCCCCCTCACTTTATCTCGATA
CATAAACTCGCTAATAACTGATAAGCGTCCAATTTTATGTTTTGAAGTTG
TCTTAAATTTGATAATTAAGATAGTGTGCGATTACTGTATTTTCTAACAT
TTTATTCAATCATTTTCGCGTTCAGAGCTCTATTGTCCAGTGCTTGAAGC
TCCATATCATGGTCACGTGACACCAGCCACGTGTTCAAAGAAATATGAAA
ACATTGCAGTGGGGAGCACGTGTAAATTCGAATGTTCTAAAGGATTCGAA
TTAAAGACCAATGTGGGTGCACAAACATTGTCGTGTCGCATTGACGGTAC
ATGGGATCATGGTACACCAAATTGCCACCGTAAGTATATGTTTTTAACCC
CCTCTAAGCCAAACTTATTATTAAGGTCGTGATAGACTAAATGTCTAAAG
TCCATTCGCTTGAAGCGTGCACACTTTCTTGTTATTATGTTGAAACCAAT
CTCATGAAAATTGGTCTAATTACACTGGCTTGGTTTCTACACATTGTAGC
AAAAATGAGTTCACACTCTTGAGCGAATGGACTTCAATTTATATTATTTT
TATATTGCCCCCTCAGTGACTAATTTTTCATCGTTAAAAAGAAATACAAA
CTTACTGAAGAATCCCAATAAGGACGAAATGCATGCACCTGCTCTGTCAC
CCAATCTCCTGAAAGAAGATGGATAGTTGGACAGAAATTATATGAATTTC
TTCTTACATACATTGTTCACTCTCAAGTTATAAGGTTTAGAAATTCATCT
AAAATTAGCTTTTCATTTTTACCTACAGCTGTCAAATGTCCCACCCTTCA
GCGTCCGATCAACGGAGGTCTGGTACCGGCCCGTTGTCATGACGATCAGC
GTGGTTACAACGAGTTCGGTCAGCGGTGTGTAGCGTATTGTCGCCATGGA
TACCGGTTGAGAGGCGCACCAACGAAATATTGTCAAGCTGATAAGTCATG
GTCAAACAATAACGGAGCTCTAGAATGTGTCAAGAGTAAGTCGTTTCAAC
GTTCATTTAATGTCCACAACGTCCATATAACGTTAGATGAACGTTAAAAC
AACGTCGTGTGCCAGCTGGGTTGTTTATAGCGGCCGTAGCATCCAGTTAC
GGTGCGCAAGGTCGTAGGTTCAATCCCCTGGCCGAGTCATACCAAAGACT
TCTTACTGAGCACAAAATAGTGCTTGTTGCCTCTCTGCTTGATGCTCAGT
AATTAAGGGAAGGGTCAAGGGTAAGTGGAGAAATCCAGGGAGAACTAGTG
GCGCCCTCACCTACCTTCTGTTAGAAGGCCGTAGCATGAAGGTAGATCAT
CCAGCTACGGTGCGCAAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNAAAAAAAAAAAAATATTGGATGTAATGGTAATCAATTCGCCGC
GACAAAGCATACGTGTCTACGTAAAAAGTTTTCGCTTAAATTCAACGTTG
TTTTTTAGTTGTCGAGCCACCGTACATAAATTGCCCAACAGACGTGCAAG
CTGTACTCCCTGATAACAGCAACTCAATGAGCCTGGCCTCCAAATTCCGA
CTTCCGCAAACAAACGTCAACTCATCATCAATCGTTACGTATCCCGGTAA
TGTGGGACCGGATTACAAATTCCGATTCGGGAAAACTTTGGTCTCGTATG
TCGCTAATCATGTTACTGGGGAGACTGTTTCTTGCTCGTATTTTGTTGAT
ATTAAAGGTAAGAAGCGGGAAAATCAAACTGCTTAATTTAAGTTAAGACA
TGAAATAGCACACATTTGTGGAATGAATACAATATTTTAAATTTGGCGGG
AACTTTATTTGGCAGACTCTGGCATAATTCACCAAATCTGCCAAATTTTC
TTAACTCAACAAATTTTGGATTTTTTCGTTTCCATCCTGAAATGGTTTGT
TTCAACGATAAATTTCAAAATTTCAAGGTTGCAACTCTCCTTTCACTCTA
AAAATTTGTTTGATGAGCTTTTAAAAAGAGGCTCCCCTCTACTAAAATGA
ACTTATATCGGACTTTAATACTTTCTTTCTCATTTTTATACTTAATAATA
TTACAAAGTATAGCAATGTGCCCTCCCGGTTATTACCATAATGGCTTTAT
GGCAACTCCTGAACTTGGGCACAGGATGTACGGTACTTAATGATATTACC
AAAAATCAGGAAAAAAATGAAAATGACAAATTTGTTGAGTTCCCCTTTAA
TGACACATAACACATAACATTTCTACAACAGATAAAACACCACCAACTGT
ACAGAACTGTCCAACCGACATCAACGTTCAGACAACATCCAAACTAAGTA
CCATCATAACATGGACAGAACCAAAATTCACCGATAATGTTGGTGTTCGG
AGAATCATGAGACCGCAACGCAAACCCGGACAAGCCTGGTATCCTGGTGA
AGAAATGACTATTTTGTATTTGGCAACTGATGTTGCTGGCAATCAGGCTA
GATGTAGCTTCAGAGTGACTGTTAAAAGTGAGTTTTCTGTTGTTTTCAGT
ATTCCCAGATGGCACACAACGTCAAAACAACGTCCATGTACCATTAATAA
CGTCCATATAACGTTATTTGAACGTTAAAATAACGTTGTGTGCCAGCTGG
GTTAAATACACGTCGCGGTTTAAATTTTACCGTAACTTACTGAGCAGATC
AGTATTAATTTTATCTGGCACCCAGATGCAGAAATTTTCATCCGACACGC
TCAAGCTCTGAAGGTCGGGAAAGTTTTCAACATCTGGAAGGTTTAGATGA
TGGAATTTTGCGAGACCGCGTCAAGAATTTTGCAGCGGGAGGTCTGGTAA
CCCAGCCCTCGTTTTCGGGGATTGGCGGGTCGAACCAAAATATTTTTAGC
TTTACGGGAAAGGGCTATTGAACCCGACTGAGGATGCGGCACATCAAAGG
CCGACTATCATTCCTCTCCAATGGGAGATTGGCCCGCCCCTTTAGAGCTT
TAGCGTGGGCGGCCGCCAATCCACCATCGGAATATCGGATAAATAATAAT
TTGAAAGTTCGCGTTTTATTCTGAACTGGTTTTCTGATTTTTGAAAATCG
AATGAATGTCCTATTCATGATATGCAACACTGGACACTGGAGAGTCTTCC
AAGAATTTTCAAAAAGTTCAACCCAATACGTCACTTTTTCTATTGTTTAA
GTGATGTACTAGTATTGGGTTGAACTTTTTGAAATTTCTCAGAAGACTCT
CCAGTGGTGCATATCATGAATTTATTTGGAAACGTTCCATGAAAACTCTG
AAATCTGCCTCAAAAATATGTGAACATTTTACTTTTTCAACAATTTCTGT
TCTTTTATTTCCTACGCATGTTATGTTGGATAGTTGGAAAGATAATCTTG
AGAAACATAATTTAAAAGATTGAGGACATTTATAAAAGTCGAAAATTGAA
GAAAAAAATAAAATATGAAAAAAGGAGAAGAAGAATTATTCCTCATTTTT
TTCATCTTCATTTTTTTTGAATTTTATAACAGTCTTTCAATCCTCTTGAT
ACTTCTTTGATACTCTTCTCTAAAATATCTTTCCAACAGTGTATAACAAT
TTAACATAGCATTAAGTGGGTGCTGAGTGAGAGATTGTTAAAAAAATAAA
ATGTCCACATACGTTTAAGACAGATTTTTACAATTATTTTCAGCTAAATA
CTGTCCCGAATTGACATCCACCAACCCGGATCACATGATCACACCGTATT
CACCCCGACAATCATACGGTGTACAATGTAAAGCAGGGAAGGCGTTATTC
GGTAACTTCAACCCGATGAGTAACATGGTGATGTGTGTTGGTGGACGGTA
TCGAATCGAAGCAACTTTCATTGATCACTCACTACCTGATTGTGTCTGTA
AGTACAGTACAGCTGCCTGTCCACTGGAAAATAAATTGCCAAAATAGTTC
TATTTATACTGAGACGATTAATTTGTCTGAGACGAGCAATTTAGAAAATG
AGCATTATGGAGGAGTGTACTTTCCATTCATGTTTCAATAAATAGGATCT
CCTCCACAGATCACATTTTACAAACTACTCGTCTCAGACGATTTTTCCCA
CACAAGAGGAATGAATGAATTTTTATCCACACAAATTTTTAGACTTATCA
GAAATGCTGATTGAAGTTTTCCGACGCGCCGCTTAAAATAAGCAAAAATG
GTGATTCCTTTTTAGCATTAGCTAAACTTATATTTTGGTGTGACCGCGCT
CTTTGTCGTTTAAAAAGAACAATAGATTTTTAATTACGAACTTATTTTTA
TTCAGTGGACACCCAGCTTACATGTTTATACTTCAATTCATGATATTCAT
GACGTAATGTTTTTTACGGAAGTGTAATAAAGTCTAGGCGTTGCCACCAG
TTTTATTGTTTAATCTTAGACCATGTTCAGACGTTACGGCTCCGTTCCGT
TCCGAAATGAAACGGTTCCGAAACAAGTGTGAACAAACTTCGAAACGTCA
AAAAAAAGAAGACGTTACAAAGCAAAACAGATTGAAACGGTTTCGCTCCA
CTTTTTTCATCGGATTGAGACTGCTCCGTTTTCTTGCTCCGAAACGTTCC
GAAACCAAAATGAACGCACTCGACCCGTAACTAAAATTATATCGGAGCAA
AACGGAACAAAGCATGGTCTTAATAAGTTGGAGTCTATCGACCCAGTAGT
ATTCATGTTGAAATTGAATCACAATATTGGGCTTTCCCAGAAAAGAATTT
ACCCCCACTGTTGAGGATATCAAACCCCCTGGATATCCTCTTTTATAAAG
ATGCTTACCCCTGGATATCGTATTTTTTACTTGAAAAGACACTTTACTCC
CCGGATGTCCGGTCCCTTGTAGATATTTAACCCCCTGGATATCCACTTTT
GAACAAAAATCGTTAACCCCCCTGGATATCTGATATCCTCAACAGAGGGG
ACAGGGACTTTTTCTGGAAAAGTCCATTTACGTTTGACTACGTTTTGAGA
GATTCTTCTCCCATCATCGGGTTTCATTTATTGTTTACATCCAACATGAG
TGGTAAACGTCCGGTCTATTTTAGGTGCTTCCGTCTAAAACATTACGTCA
TGAATATCATCAATAGCTAACAAAATCTTAGATCAAAAGCATCACTATTC
CTTAACAAAAACTTATCATTCAGAACAAACCAAAAATAGATTTAACTCAC
TACTCAAGATTCTCCCTGTATTTTAAATGCAACGAGCATGTAACTTTTGT
TTGCTTAAGGTCGAGTTACCATATATTATGGACACCTTTTCAAGATATTG
CCGGCACTCAGCAATATATCATCAATATATTGCCTGACAATATATTGTGT
AGTGTATGGAGTCCTTAAGATAGATAATCATGCTTTCACAGTGAACTTTA
TTCCCCTCACATTGGGATCTTCCAGAAAATATTTGAATATGGAAGGTGGA
GGACATTTTTTGGAAATTTATCTCCCTGACATTGTGAATTTTGACCCCCC
CGGACAGAACAGATCTCACCCCGGAAAAGCATCAATAGACCCCCGCCCGG
ACATTAATAATTACCCTTAAACAGAGCAAATTTGCCCCCAAAACAAGGCA
GATTTTTCACTACCCCCAAACAAAGTATCCAATATATTCTCCACCCCCCC
CCCATGTACAAAAATTTTTCTGAAAGAGCCTATTCAATTTTTCTTATAGC
TTCATACAACTTGAGACAAGCTACAGATCAATGTTCTGAAGGGTACGAAA
GGAAAATCTTTGACGATTTCTGGATGGGTAAAACTTACTTCTGTGGTAAG
TCTACGTATTTTAAGATAATTACCGTAAGTTGGTCTAATGCCGACATCCC
TCATCTAATCTCGACACCCTTTTTAGAGATAGGAATAATGGGAAGGTCAG
AATCACTTATAGACAAACGATTTTTTCCTCTCTTATCGCTAAGTAAAGAA
AAATAGTTTACATCAGCAATTCCGACATTCATATATCTCTAAAGAAGGGT
GTCGAAATTACCTTAAGGGAAGAAATTTTCACGGGAACGAAATTTCGCGG
TTTTCGCGGATTTTGCCTAAAACCGCGAAATTAAGTTCCCGCGAAATTTT
ACAAAATCGTCAATCCGCGAAATTAAATTCCCGCGAAATTTAATTTATTT
CACGCATTCCCCCAAATTCTTACTATTTCAAGCCTTAAAACAGGTTTTTT
GCTCATTTAATAACGTTTTTGGTCAAAAATATCTTGCAACCGCGAAATTA
AATTCCCGCGAATTTTTTGAAAATTGATGAACCGCGAAATTAAGTTCCCG
CGAAAAAATATAATTTGACCAACCGCGAAATTTAATTCCCACGAAAATTT
CTTCCCTTAAGGTAGAAGAAGGATGTTTACGGGGCAATAAAGAAATTAAA
AAAAATTATTTTCAAAATTCTCATAGTGGGAAAAACTTACGCGAAAATTT
TGAATTTCTGTCGTGGTTTTTTCGTCCCGCAAAACAGAGACTGCTCAAAC
CCCGCTTTGAAGAAAATCTCTTCGTTATGTTTCGAATTTTTGCACACTAC
CATATCATAATTTTGAGAGAAGTGCTGTTTGCTACCCCGTCTTTGCAAAA
TTTGGAATCACGTTAGAAAAATTAGATTTAATCCTGATCCACGAAACTAC
GCGAAAAATCAGGGAACTCCTCATCCGCAAAATTTAATCCCCGCGAAAGT
TTATCCCATTAAAGTCTTAGCCATGTGTCCATCTGGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038217XLOC_038217Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060860-exon-scaffold_349-1575043694:502436..502508TCONS_00060860-exon-scaffold_349-1575043694:502436..502508Clytia hemisphaericaexon
TCONS_00060860-exon-scaffold_349-1575043694:501749..501880TCONS_00060860-exon-scaffold_349-1575043694:501749..501880Clytia hemisphaericaexon
TCONS_00060860-exon-scaffold_349-1575043694:499522..499659TCONS_00060860-exon-scaffold_349-1575043694:499522..499659Clytia hemisphaericaexon
TCONS_00060860-exon-scaffold_349-1575043694:498268..498393TCONS_00060860-exon-scaffold_349-1575043694:498268..498393Clytia hemisphaericaexon
TCONS_00060860-exon-scaffold_349-1575043694:497625..497747TCONS_00060860-exon-scaffold_349-1575043694:497625..497747Clytia hemisphaericaexon
TCONS_00060860-exon-scaffold_349-1575043694:496130..496333TCONS_00060860-exon-scaffold_349-1575043694:496130..496333Clytia hemisphaericaexon
TCONS_00060860-exon-scaffold_349-1575043694:495474..495680TCONS_00060860-exon-scaffold_349-1575043694:495474..495680Clytia hemisphaericaexon
TCONS_00060860-exon-scaffold_349-1575043694:493502..493750TCONS_00060860-exon-scaffold_349-1575043694:493502..493750Clytia hemisphaericaexon
TCONS_00060860-exon-scaffold_349-1575043694:492732..492977TCONS_00060860-exon-scaffold_349-1575043694:492732..492977Clytia hemisphaericaexon
TCONS_00060860-exon-scaffold_349-1575043694:491362..491565TCONS_00060860-exon-scaffold_349-1575043694:491362..491565Clytia hemisphaericaexon
TCONS_00060860-exon-scaffold_349-1575043694:489464..489559TCONS_00060860-exon-scaffold_349-1575043694:489464..489559Clytia hemisphaericaexon
TCONS_00060860-exon-scaffold_349-1575043694:488520..488538TCONS_00060860-exon-scaffold_349-1575043694:488520..488538Clytia hemisphaericaexon
TCONS_00060860-exon-scaffold_349-1510915933:502436..502508TCONS_00060860-exon-scaffold_349-1510915933:502436..502508Clytia hemisphaericaexon
TCONS_00060860-exon-scaffold_349-1510915933:501749..501880TCONS_00060860-exon-scaffold_349-1510915933:501749..501880Clytia hemisphaericaexon
TCONS_00060860-exon-scaffold_349-1510915933:499522..499659TCONS_00060860-exon-scaffold_349-1510915933:499522..499659Clytia hemisphaericaexon
TCONS_00060860-exon-scaffold_349-1510915933:498268..498393TCONS_00060860-exon-scaffold_349-1510915933:498268..498393Clytia hemisphaericaexon
TCONS_00060860-exon-scaffold_349-1510915933:497625..497747TCONS_00060860-exon-scaffold_349-1510915933:497625..497747Clytia hemisphaericaexon
TCONS_00060860-exon-scaffold_349-1510915933:496130..496333TCONS_00060860-exon-scaffold_349-1510915933:496130..496333Clytia hemisphaericaexon
TCONS_00060860-exon-scaffold_349-1510915933:495474..495680TCONS_00060860-exon-scaffold_349-1510915933:495474..495680Clytia hemisphaericaexon
TCONS_00060860-exon-scaffold_349-1510915933:493502..493750TCONS_00060860-exon-scaffold_349-1510915933:493502..493750Clytia hemisphaericaexon
TCONS_00060860-exon-scaffold_349-1510915933:492732..492977TCONS_00060860-exon-scaffold_349-1510915933:492732..492977Clytia hemisphaericaexon
TCONS_00060860-exon-scaffold_349-1510915933:491362..491565TCONS_00060860-exon-scaffold_349-1510915933:491362..491565Clytia hemisphaericaexon
TCONS_00060860-exon-scaffold_349-1510915933:489464..489559TCONS_00060860-exon-scaffold_349-1510915933:489464..489559Clytia hemisphaericaexon
TCONS_00060860-exon-scaffold_349-1510915933:488520..488538TCONS_00060860-exon-scaffold_349-1510915933:488520..488538Clytia hemisphaericaexon
TCONS_00060860-exon-scaffold_349-1491911889:502436..502508TCONS_00060860-exon-scaffold_349-1491911889:502436..502508Clytia hemisphaericaexon
TCONS_00060860-exon-scaffold_349-1491911889:501749..501880TCONS_00060860-exon-scaffold_349-1491911889:501749..501880Clytia hemisphaericaexon
TCONS_00060860-exon-scaffold_349-1491911889:499522..499659TCONS_00060860-exon-scaffold_349-1491911889:499522..499659Clytia hemisphaericaexon
TCONS_00060860-exon-scaffold_349-1491911889:498268..498393TCONS_00060860-exon-scaffold_349-1491911889:498268..498393Clytia hemisphaericaexon
TCONS_00060860-exon-scaffold_349-1491911889:497625..497747TCONS_00060860-exon-scaffold_349-1491911889:497625..497747Clytia hemisphaericaexon
TCONS_00060860-exon-scaffold_349-1491911889:496130..496333TCONS_00060860-exon-scaffold_349-1491911889:496130..496333Clytia hemisphaericaexon
TCONS_00060860-exon-scaffold_349-1491911889:495474..495680TCONS_00060860-exon-scaffold_349-1491911889:495474..495680Clytia hemisphaericaexon
TCONS_00060860-exon-scaffold_349-1491911889:493502..493750TCONS_00060860-exon-scaffold_349-1491911889:493502..493750Clytia hemisphaericaexon
TCONS_00060860-exon-scaffold_349-1491911889:492732..492977TCONS_00060860-exon-scaffold_349-1491911889:492732..492977Clytia hemisphaericaexon
TCONS_00060860-exon-scaffold_349-1491911889:491362..491565TCONS_00060860-exon-scaffold_349-1491911889:491362..491565Clytia hemisphaericaexon
TCONS_00060860-exon-scaffold_349-1491911889:489464..489559TCONS_00060860-exon-scaffold_349-1491911889:489464..489559Clytia hemisphaericaexon
TCONS_00060860-exon-scaffold_349-1491911889:488520..488538TCONS_00060860-exon-scaffold_349-1491911889:488520..488538Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_349supercontigscaffold_349:488520..502508 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0877563	0.282594	0.163783	0.095975	0.267233	0.0511766	0.179563	0.201605	0.10182	0.160929	0.649213	0.297579	2.53059	0	0.116109	1.67586	0.296023	0.367503	4.50758	2.21867	0.993654	1.70784	1.45976	4.41164	2.80114	4.07698	0.49696	0	0.00587378	0.252605
Blast
[Close]
BLAST of TCONS_00060860 vs. Swiss-Prot (Human)
Match: SVEP1 (Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 OS=Homo sapiens GN=SVEP1 PE=1 SV=3)

HSP 1 Score: 144.05 bits (362), Expect = 1.486e-35
Identity = 110/399 (27.57%), Postives = 160/399 (40.10%), Query Frame = 1 
Query:  415 CTCRKGFE--------------RKPNNPYGCQDINECLTN-NGGCDHNCH---DYQGGHYCSCKVGFRLREDSKSCEELYCPVLEAPYHGHVTPATCSKKYENIAVGSTCKFECSKGFELKTNVGAQTLSCRIDGTWDHGTPNCHPVKCPTLQRPINGGLVPARCHDDQRGYNEFGQRCVAYCRHGYRLRGAPTKY-CQADKSWSNNNGALECVKIVEPPYINCPTDVQAVLPDNSNSMSLASKFRLPQTNVNSSSIVTYPGNVGPDYKFRFGKTLVSYVANHVTGETVSCSYFVDIKDKTPPTVQNCPTDINVQTTSKLSTIITWTEPKFTDNVGVRRIMRPQRKPGQAWYPGEEMTILYLATDVAGNQARCSFRVTVKTKYCP-ELTSTNPDHMITP 1551
            C CR+G+               + P N Y  Q  N C  + N  C   CH   D  G     C            C    CP L  P HGH++ +T    Y+     +TC   C +G+ L+   G+  L+C+ +  WD   P C    C T Q P +  + P  C        +FG  C   CR G+ L G      C     W+    A  C K VE P INCP D++A   +  +S ++  +    + N      V       P Y F  G   + Y A  ++G   SC + + + D  PP +  C +   VQ + K+    +W EP+F+DN G   ++      G   +P  E  + Y ATD +GN   C   + +K   C    T  N D + TP
Sbjct:  360 CVCREGYRASGQTCELVHCPALKPPENGYFIQ--NTCNNHFNAACGVRCHPGFDLVGSSIILCLPNGLWSGSESYCRVRTCPHLRQPKHGHISCSTREMLYK-----TTCLVACDEGYRLE---GSDKLTCQGNSQWDGPEPRCVERHCSTFQMPKDVIISPHNCGKQPA---KFGTICYVSCRQGFILSGVKEMLRCTTSGKWNVGVQAAVC-KDVEAPQINCPKDIEAKTLEQQDSANVTWQIPTAKDNSGEKVSVHVHPAFTPPYLFPIGDVAIVYTATDLSGNQASCIFHIKVIDAEPPVIDWCRSPPPVQVSEKVHA-ASWDEPQFSDNSGAELVITRSHTQGDL-FPQGETIVQYTATDPSGNNRTCDIHIVIKGSPCEIPFTPVNGDFICTP 742
The following BLAST results are available for this feature:
BLAST of TCONS_00060860 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SVEP11.486e-3527.57Sushi, von Willebrand factor type A, EGF and pentr... [more]
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