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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060889 ID=TCONS_00060889|Name=TCONS_00060889|organism=Clytia hemisphaerica|type=transcript|length=5445bpRun BLAST on NCBI protein sequence of Rho GTPase subfamily member >TCONS_00060889-protein ID=TCONS_00060889-protein|Name=Rho GTPase subfamily member|organism=Clytia hemisphaerica|type=polypeptide|length=1204bp MIENDPSEHLTLPKPPKPAQSHHNNRPLHKNNNAEDENDPELQVIREFLNRun BLAST on NCBI transcript from alignment at scaffold_349:680658..746462- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060889 ID=TCONS_00060889|Name=TCONS_00060889|organism=Clytia hemisphaerica|type=transcript|length=65805bp|location=Sequence derived from alignment at scaffold_349:680658..746462- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_349:680658..746462- >TCONS_00060889 ID=TCONS_00060889|Name=TCONS_00060889|organism=Clytia hemisphaerica|type=CDS|length=61455bp|location=Sequence derived from alignment at scaffold_349:680658..746462- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00060889 vs. Swiss-Prot (Human)
Match: RASEF (Ras and EF-hand domain-containing protein OS=Homo sapiens GN=RASEF PE=1 SV=1) HSP 1 Score: 212.616 bits (540), Expect = 1.379e-56 Identity = 105/197 (53.30%), Postives = 140/197 (71.07%), Query Frame = 2
Query: 3479 FKLVLAGNAAVGKSSFILRLCKNKFYSALNATLGVDFQMKRMIVDKKKIALQCWDTAGQERFRSIAKSYFRRVDGVVLLYDVTCENSFLDVREWIESIE-SSSDNVPVILCGNKVDLRPDAERIGMPVISRDQGQQLAKDVGALFIETSAKEGTNIHRACKDLIRMMQRNENPKPHPNGTVQLDPESEK-PKKAGCC 4063
+K+VLAG+AAVGKSSF++RLCKN+F ++ATLGVDFQMK +IVD ++ LQ WDTAGQERFRSIAKSYFR+ DGV+LLYDVTCE SFL++REW++ IE ++ + VP++L GNK D+R A G + G++LA GALF ETSAK+G+NI A L R +++ + + T S+K P+ CC
Sbjct: 542 YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKKRTDKDDSRSITNLTGTNSKKSPQMKNCC 738 HSP 2 Score: 86.2705 bits (212), Expect = 9.129e-17 Identity = 102/401 (25.44%), Postives = 197/401 (49.13%), Query Frame = 2
Query: 566 DENDPELQVIREFLNTANLDSSGFIDETELAAVVD---LSPDEIRQIFWTLDNDGDGKISIEQFTH-YYKTLQEKQDVNENELPPADN-AKPMPAHHQDMTRDSFRDSGYSMSEPTHRKKKHPTTLSPKTQ---KDAAKYL-GQEYLDDLYEVARSRDDPLLLESLENFLSATVDNLLKKQADNERLDAALKHAKDQNTEIAAQIEDEMEEQVAIMEEKIRXXXXXXXXXXXXXAHAQLQKANDELGDMEHKIIALEEKLNEQKIKEASIPD--HFIDKIQRKEQENQQLQAKLLEFHTQMSLMRTEVAALKSEYDEQSSRLHNERGTVLSCVREQENLTRQLQMLHEANKRLHDTNDDLRSALD--VKRSNSFMNESSISP---LKRS--QSFAHQQNPL 1714
D + EL +R + + SG ++ E A+ + P + +F LD D DG I+ ++F + +L+ + + L PA ++ P H + D+ +++ T P Q D AK++ +E + LY+ + +P L++ E+ + + + + + E L A+K A+D+ +++E+EM++++ E K R++E++K + + Q + E+GD++ I L KL EQ + + D +I ENQ+++ LLE T ++ +++E+ ALKS+Y +QS + + + ++ +L RQ+++L AN++LHD+ND LRSAL+ + N ++ ++ISP + RS + H PL
Sbjct: 4 DGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQRLDADRDGAITFQEFARGFLGSLRGGRRRDWGPLDPAPAVSEAGPETHDSEEDEGDEDAAAALA--TSCGPASPGRAWQDFQARLGDEAKFIPREEQVSTLYQNI-NLVEPRLIQPYEHVIKNFIREIRLQSTEMENLAIAVKRAQDKAAMQLSELEEEMDQRIQAAEHKTRKDEKRKAEEALSDLRRQYET---EVGDLQVTIKKLR-KLEEQSKRVSQKEDVAALKKQIYDLSMENQKVKKDLLEAQTNIAFLQSELDALKSDYADQSLNTERDLEIIRAYTEDRNSLERQIEILQTANRKLHDSNDGLRSALENSYSKFNRSLHINNISPGNTISRSSPKFIGHSPQPL 397 The following BLAST results are available for this feature:
BLAST of TCONS_00060889 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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