TCONS_00060894 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060894
Unique NameTCONS_00060894
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length974

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060894 ID=TCONS_00060894|Name=TCONS_00060894|organism=Clytia hemisphaerica|type=transcript|length=974bp
TTTGTAAGCGCCATTTTCATTTCGGAACAAACTTAAGGCATTTTCTACCC
AATGCACAATACCCTGACCTTCTAAacgcttttttcttttatttaagaat
atactttataagaatattcatgatgaaattggcttaaaaatttaagaaat
ttttgagattttgaaaataatgatgacatattttaaagcttaaagtattt
ttgtaaattgtttaaaattttacattgtattttctcaaagttttcattca
gcaaaaaTTCTTCGGATAGTATATATTGTCTTCATTGCAGCTTTCAACTA
CAAATAATTCTTAATTTCCACTGACAAACATACTTCAATTCCATTTCAAT
GAACATCCATTTACAATCTTGATAACGTTGTCCTGGGTAACAACTAGTTC
GTCTCACCCTTTGAGTCCCATACATCAATCGGTGAAAACGACGGCGGCCG
CCATTTCGTAGATTGGATATAGTAATCTCACCGTCTTGATCCTCTTTCTC
ATCCGCTAAATGGTTTATTTCCTCTTCAATTTCTTTGTATAATCTGTCGA
ATTCTTGAATGTCTTGCGATTCAGAATCGGCCGTATCGCCANATCCGCTA
AATGGTTTATTTCCTCTTCAATTTCTTTGTATAATCTGTCGAATTCTTGA
ATGTCTTGCGATTCAGAATCGGCCGTATCGCCAACTTTAAAGCTTTCAAC
ACGTAAGACAAAGTAAGCTAACAAACAGACCAAAATTGTTGTCTTCATAG
TTAGTTTTAAATGGTTTGAAACTCTCGATGATATCCTCTAAAATGAATAT
ACACTCTTCAAAAAGTCTTTATTCAGCGAATATTAACTTTGAATTCAGCG
AAATCTCTATACAATCCTTGAAATGTCATAATGTTATGTCATcgtttttt
gtaaaatttctttgaagaaaaaaatgacttcTGTTCTGTGTAAAAATCTT
GCTCAAACAAGAAATCGTTCAAAA
Run BLAST on NCBI

transcript from alignment at scaffold_349:23955..24928

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060894 ID=TCONS_00060894|Name=TCONS_00060894|organism=Clytia hemisphaerica|type=transcript|length=974bp|location=Sequence derived from alignment at scaffold_349:23955..24928 (Clytia hemisphaerica)
TTTTGAACGATTTCTTGTTTGAGCAAGATTTTTACACAGAACAgaagtca tttttttcttcaaagaaattttacaaaaaacgATGACATAACATTATGAC ATTTCAAGGATTGTATAGAGATTTCGCTGAATTCAAAGTTAATATTCGCT GAATAAAGACTTTTTGAAGAGTGTATATTCATTTTAGAGGATATCATCGA GAGTTTCAAACCATTTAAAACTAACTATGAAGACAACAATTTTGGTCTGT TTGTTAGCTTACTTTGTCTTACGTGTTGAAAGCTTTAAAGTTGGCGATAC GGCCGATTCTGAATCGCAAGACATTCAAGAATTCGACAGATTATACAAAG AAATTGAAGAGGAAATAAACCATTTAGCGGATNTGGCGATACGGCCGATT CTGAATCGCAAGACATTCAAGAATTCGACAGATTATACAAAGAAATTGAA GAGGAAATAAACCATTTAGCGGATGAGAAAGAGGATCAAGACGGTGAGAT TACTATATCCAATCTACGAAATGGCGGCCGCCGTCGTTTTCACCGATTGA TGTATGGGACTCAAAGGGTGAGACGAACTAGTTGTTACCCAGGACAACGT TATCAAGATTGTAAATGGATGTTCATTGAAATGGAATTGAAGTATGTTTG TCAGTGGAAATTAAGAATTATTTGTAGTTGAAAGCTGCAATGAAGACAAT ATATACTATCCGAAGAAtttttgctgaatgaaaactttgagaaaatacaa tgtaaaattttaaacaatttacaaaaatactttaagctttaaaatatgtc atcattattttcaaaatctcaaaaatttcttaaatttttaagccaatttc atcatgaatattcttataaagtatattcttaaataaaagaaaaaagcgtT TAGAAGGTCAGGGTATTGTGCATTGGGTAGAAAATGCCTTAAGTTTGTTC CGAAATGAAAATGGCGCTTACAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038224XLOC_038224Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060894-exon-scaffold_349-1491911889:23955..24928TCONS_00060894-exon-scaffold_349-1491911889:23955..24928Clytia hemisphaericaexon
TCONS_00060894-exon-scaffold_349-1510915933:23955..24928TCONS_00060894-exon-scaffold_349-1510915933:23955..24928Clytia hemisphaericaexon
TCONS_00060894-exon-scaffold_349-1575043694:23955..24928TCONS_00060894-exon-scaffold_349-1575043694:23955..24928Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_349supercontigscaffold_349:23955..24928 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.0904481 0.23652 0.287772 1.3759 0.642468 0.298119 0.0562801 0.703445 1.55897 1.50353 0.710384 4.28722 4.16404 6.97848 5.42598 1.4622 2.14102 3.54952 4.03416 1.12098 0.984192 2.95537 3.23897 3.63482 8.30994 2.35286 1.42518 21.3102 13.478
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060894 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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