TCONS_00060915 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060915
Unique NameTCONS_00060915
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length601

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060915 ID=TCONS_00060915|Name=TCONS_00060915|organism=Clytia hemisphaerica|type=transcript|length=601bp
ATTTAAAAATTAATCTAAAAATACccattttttgtgttttagaggccaca
aagccttaaaatgttctcaattcataatattttagccatcgaggtcatat
ttaatcttttttgacaaaaatgtgcACACCCTCTAAAATTCAACTAAACA
TTTATAAACATGATGGAAAAAGGTCCGTGGATTATCGTGGATAATATCTC
TTATTAATGGCTGTCTTCAATAACTCATATGAACTGAAGCATGTCTCCTA
ACGTCAACTTTCCGGTAAAAAGCTTTTCCGCATACACCACAAGAATACGG
ACGGATCCCGGTATGGCGTCTTTGATGAGTCAGCATATTCGAAGATTGTG
AAAAGCGTTTACCACAAACGTTACACTGGTACGGTTTTGATCCGGAATGT
GTGACCATGTGTTTACCAAGGTCAGACTTACGAAGAAAGCTCATATTGCA
TTGGTTGCACTTGTATGATTTGGAGTTCTTATGGATTAATCGGTGATTTG
ATAAACTACTTGATCTTTGGAACCATTTAAGACAATATTCACATTGGTGC
TTTTTGATCTCGTCTGAGGAGGTTACGTGCCAAGGTGGTAGGTAGCTCAA
T
Run BLAST on NCBI

protein sequence of TCONS_00060915-protein

>TCONS_00060915-protein ID=TCONS_00060915-protein|Name=TCONS_00060915-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
LSYLPPWHVTSSDEIKKHQCEYCLKWFQRSSSLSNHRLIHKNSKSYKCNQ
CNMSFLRKSDLGKHMVTHSGSKPYQCNVCGKRFSQSSNMLTHQRRHTGIR
PYSCGVCGKAFYRKVDVRRHASVHMSY
Run BLAST on NCBI

transcript from alignment at scaffold_349:816377..816977

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060915 ID=TCONS_00060915|Name=TCONS_00060915|organism=Clytia hemisphaerica|type=transcript|length=601bp|location=Sequence derived from alignment at scaffold_349:816377..816977 (Clytia hemisphaerica)
ATTGAGCTACCTACCACCTTGGCACGTAACCTCCTCAGACGAGATCAAAA
AGCACCAATGTGAATATTGTCTTAAATGGTTCCAAAGATCAAGTAGTTTA
TCAAATCACCGATTAATCCATAAGAACTCCAAATCATACAAGTGCAACCA
ATGCAATATGAGCTTTCTTCGTAAGTCTGACCTTGGTAAACACATGGTCA
CACATTCCGGATCAAAACCGTACCAGTGTAACGTTTGTGGTAAACGCTTT
TCACAATCTTCGAATATGCTGACTCATCAAAGACGCCATACCGGGATCCG
TCCGTATTCTTGTGGTGTATGCGGAAAAGCTTTTTACCGGAAAGTTGACG
TTAGGAGACATGCTTCAGTTCATATGAGTTATTGAAGACAGCCATTAATA
AGAGATATTATCCACGATAATCCACGGACCTTTTTCCATCATGTTTATAA
ATGTTTAGTTGAATTTTAGAGGGTGTgcacatttttgtcaaaaaagatta
aatatgacctcgatggctaaaatattatgaattgagaacattttaaggct
ttgtggcctctaaaacacaaaaaatggGTATTTTTAGATTAATTTTTAAA
T

Coding sequence (CDS) from alignment at scaffold_349:816377..816977

>TCONS_00060915 ID=TCONS_00060915|Name=TCONS_00060915|organism=Clytia hemisphaerica|type=CDS|length=384bp|location=Sequence derived from alignment at scaffold_349:816377..816977 (Clytia hemisphaerica)
TTGAGCTACCTACCACCTTGGCACGTAACCTCCTCAGACGAGATCAAAAA
GCACCAATGTGAATATTGTCTTAAATGGTTCCAAAGATCAAGTAGTTTAT
CAAATCACCGATTAATCCATAAGAACTCCAAATCATACAAGTGCAACCAA
TGCAATATGAGCTTTCTTCGTAAGTCTGACCTTGGTAAACACATGGTCAC
ACATTCCGGATCAAAACCGTACCAGTGTAACGTTTGTGGTAAACGCTTTT
CACAATCTTCGAATATGCTGACTCATCAAAGACGCCATACCGGGATCCGT
CCGTATTCTTGTGGTGTATGCGGAAAAGCTTTTTACCGGAAAGTTGACGT
TAGGAGACATGCTTCAGTTCATATGAGTTATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038245XLOC_038245Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060915-proteinTCONS_00060915-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060915-exon-scaffold_349-1491911889:816377..816977TCONS_00060915-exon-scaffold_349-1491911889:816377..816977Clytia hemisphaericaexon
TCONS_00060915-exon-scaffold_349-1510915933:816377..816977TCONS_00060915-exon-scaffold_349-1510915933:816377..816977Clytia hemisphaericaexon
TCONS_00060915-exon-scaffold_349-1575043694:816377..816977TCONS_00060915-exon-scaffold_349-1575043694:816377..816977Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_349supercontigscaffold_349:816377..816977 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.0740458	0.18789	0	0	0.150043	0	5.21732	3.5551	1.16486	0.468558	1.55387	2.13471	0.377131	0.280634	0.0875048	0	0	0	0	0.0166293	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
[Close]
BLAST of TCONS_00060915 vs. Swiss-Prot (Human)
Match: GFI1 (Zinc finger protein Gfi-1 OS=Homo sapiens GN=GFI1 PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 1.340e-34
Identity = 56/102 (54.90%), Postives = 74/102 (72.55%), Query Frame = -2 
Query:  241 QCEYCLKWFQRSSSLSNHRLIHKNSKSYKCNQCNMSFLRKSDLGKHMVTHSGSKPYQCNVCGKRFSQSSNMLTHQRRHTGIRPYSCGVCGKAFYRKVDVRRH 546
             C+ C K F+RSS+LS H LIH +++ Y C  C   F +KSD+ KH   H+G KP++C VCGK FSQSSN++TH R+HTG +P+ C +CGK F RKVD+RRH
Sbjct:  313 DCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFGCDLCGKGFQRKVDLRRH 414

HSP 2 Score: 75.485 bits (184), Expect = 6.391e-16
Identity = 37/108 (34.26%), Postives = 56/108 (51.85%), Query Frame = -2 
Query:  229 HQCEYCLKWFQRSSSLSNH-RLIHKNSKSYKCNQCNMSFLRKSDLGKHMVTHSGSKPYQCNVCGKRFSQSSNMLTHQRRHTGIRPYSCGVCGKAFYRKVDVRRHASVH 549
            ++C  C K F     L  H R  H  ++ + C  C  +F     L +H   HS  + + C +CGK F +SS + TH   H+  RPY C  CGK F++K D+++H  +H
Sbjct:  255 YKCIKCSKVFSTPHGLEVHVRRSHSGTRPFACEMCGKTFGHAVSLEQHKAVHSQERSFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIH 362
The following BLAST results are available for this feature:
BLAST of TCONS_00060915 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GFI11.340e-3454.90Zinc finger protein Gfi-1 OS=Homo sapiens GN=GFI1 ... [more]
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