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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060934 ID=TCONS_00060934|Name=TCONS_00060934|organism=Clytia hemisphaerica|type=transcript|length=4373bp
GAAGATCCCAGCCTCGTCTACTGAAAATCGATTCTTCCCTTTTTCAGgCA
ATGGAAAATTAGGCTTTGGCCTAGATAAAGACAAGAAGCAATTCTATTTG
AAGACTGACACACACGGCTACATTCAGTCATTTGCACCCACTCTTGACCT
CAAGATACAAGAGTCTCACATTGTGGAAGAAAAGGCTGTGATTATGAATT
TGAAAGCTGGACTTGTTATTCTGGCTACAGTGTTTGATGTTGAGCAAAGC
TGTGTCCTTGTCGAGGAAACATTTTTCGCACATCGCCTACACAGTGGTCT
ATTTCAACATGTCATCAAAGTGAAAAATTCTGGACCCTTCTCCATCGATC
TTGAATTATCCACAGCAGACgtcaagaaactgaaaaaaattgaaaaaatt
cacaCAGCACATCACACTAACGGTCACCTAGCAACCATCAGtggtgaaat
caaaacaaagcgAAACAAAGAGAACAAAGAGGGCTTGGTCAAGTTTACAT
CTGTTCTCTCCAGCGTTGATAACAGGGTCTTGAAAGTACCACAGAAAGGT
GAAAAAAGTATGAAACTCTTGTCTTATACTGATTTCATCTTTCTGGAACA
AGAGCCGCAAGAAGTTGTGCCACCCACCAACAAGACTAGGACTGGAAGAG
ACGTCAAAGATACAGACATCATCGCTTTGACTGAGAAATCCAACACCATG
CTCAAATCTCTCTCTAAAGATCACGTTCAGGATCAACATGTCAAAGCATG
GAGTGAAATTTGGACGACTGGTATTTCAATTTCATCAGATTCTGACCCAA
ATTCGCCATCACCATTACACGTCAACTTGACTCAATACTACTTATACACC
ACACACAGTGGTAACTCAAccaaaaaatcaaccaaatccGTCAATTGTTA
CACAGGGCCACCAACTTTACACTATCCAAAACATTGGGTGGTACCGACTA
GTTTGAGCTCTTTAAGTTCATTGATGCAACTATGGGAGGATTTCTTTACA
CGGAATAATTGCCCTATATCTTCTCTCACTGCTTTTTCATTACCTCAATT
AATGGTATTGACTATCGTAGGCCTACATTATCACAACAAGCAGCTACAAA
TGGCTCTCAACCCTTTGAACTTGCGTACCAATATTTCATTACGACATGTA
TCCTTAGACTATTTCCATTCACAAGATCAATTCGATCTGAAAGTTTTAGT
GACCAATATCAAAACAGAACCGTATCAAATTTATGTTATGAATAATGGTA
AACATTCGCCGAAGATTTTCGGTTGTGGTAGTGCGTGTGAGCACGTTGTA
GAGTTGGGCAGCTCCAGACTAAAATTCGTGATTCACCCAACAGATCCGGT
GACTCCTCTTTTTTACATCTCCAGCAACCGGACTCTTTTGGAGAAGATCC
ACCATTCAGACTTTATGCGAAAAGCAATACATTCTGCGAAGGAGATCAAA
GCGACTGCTCACCATCATCAGCTTTCGCCTAAATTCTGGATCTCCGTTGT
GGTGCTCATCGTtagttttcatgttattgttttgaaaatgatataCAATG
AGTGTCGGAAGGGCCGGGGAACGGTGCCACGCCGAGGTCCTTATAGTTAG
AAGAGTGTCTCTTTTTATACAAGGTTTTTATACAAGTGAAATTTAAAATA
ACCAACATATATATATTGGTGcatatattttttgatgattaaTTATTGCT
GTTGTTATTATCCTTGGAGCTCAGGTGAGTGTTATCGCATTTATTCNAAA
AATCAACCAAATCCGTCAATTGTTACACAGGGCCACCAACTTTACACTAT
CCAAAACATTGGGTGGTACCGACTAGTTTGAGCTCTTTAAGTTCATTGAT
GCAACTATGGGAGGATTTCTTCACACGAAATAATTGCCCTATATCTTCTC
TCACTGCTTTTTCATTACCTCAATTAATGGTATTGACTATCGTAGGCCTA
CATTATCACAACAAGCAACTACAAATGGCTCTCAACCCTTTGAACTTGCG
TACCAATATTTCATTACGACATGTATCCTTAGACTATTTCCATTCACAAG
ATCAATTTGATCTGAAAGTTTTAGTGACCAATATCAAAACAGAACCGTAT
CAAATTTATGTTATGAATAATGGTAAACATTCGCCGAAGATTTTCGGTTG
TGGTAGTGCGTGTGAGCACGTTGTAGAGTTGGGCAGCTCCAGACTAAAAT
TCGTGATTCACCCAACAGATCCGGTGACTCCTCTTTTTTACATCTCCAGC
AACCGGACTCTTTTGGAGAAGATCCACCATTCAGACTTTATGCGAAAAGC
AATACATTCTGCGAAGGAGATCAAAGCGACTGCTCACCATCATCAGCTTT
CGCCTAAATTCTGGATCTCCGTTGTGGTGCTCATCGTtagttttcatgtt
attgttttgaaaatgatataCAATGAGTGTCGGAAGGGCCGGGGAACGGT
GCCACGCCGAGGTCCTTATAGTTAGAAGAGTGTCTCTTTTTATACGAGGT
TTTTATACAAGTGAAATTTAAAATAACCAACATATATATTGGTGCatata
ttttttgatgaaattattgCTGTTGTTATTATCCTTGGAGCTCAGGTGAG
TGTTATCGCATTTATTAATTAATTATCACAAGAATTTATTTATATAATTG
ACTGGAGCTGAATTTTAAGGTCTTACTTTACTAAACAAAATAatgatttt
acaatttttacccTTATTAATATTTGCATGcgatattttttttacaaagt
gttggtttaaataaaattatttcgAATAAAGGAAGCAAACTAAGGCCATT
CAACTAAGGCCATTCAACTGGGTATTCCAGAAAATTTACCCACCCTGTCG
AGGAGGTCATATTTATGGCCCTGGGGATACCTTTAATTAAACCTGGATAA
CCCAAGGGTTTAAGTGGAATCTCTTGAAATGGGcagacattttgaaaatt
ggataaGACTCCAACGGGTTCTACctcaaaaattgtcaaaaatccaggtt
gtgtattgaaattcaattcaaagcaGTTTGGCGTCCTCAACTTTAAAGCT
ATCTATTTGCAGAGGGTAAATCCTTGGAACTGATTGTGTGCTGCATTGTG
GGGCATCTTTAAATGACAAGTTGAATaagttcaaaattgaaaaaaccttT
AACTGTGGGTTTTTGCTATAAAATTGGAATGGAAGTAGGGGAGTTGATAC
TAAAATCTAGGACATCAGGatgtttagtgacgtggtggtatacccaaaaa
acttaaaaatccttttagtacaaTTTGAACAatgggtactaaaataccaa
aaaggtggtatccagaataaaatttgaattttttttagtaaattggtact
aaaattagtaattttcatgattttattaatctttttcacaaattttcgtG
ATGTTTTAGTACTTACGAGATTTTAGTACCACCCCCCACTGATTGAGGAG
GGGGAAACCAGGGATACGTTTGATAACTAAGATGTTTTCACAGTTCGTTC
GAGAGATAGTATTAtgcgttttttatttttctaaaatatgatAAATTATG
ATAATGTGATTATAGCATGTATAATTGTTCTTTAGggagtttttttttcg
aattagtCATTTTTACGTGAGGAAGGAAGGTATATATTACATGAGGATCA
TTTTTAAAGTGatcaaattgaagaaaatattttatataataCTCTTACAA
ACCTAAAATACTTGGTTATTTCTACATCATTTTATGTACAAAACTATTTA
CAGTATTAAATATCTGAACTTAAATAATTTGAGCTACAGTAGGTCCCGTA
GAAGGAGGAAAACTCAGTCGGGTAAATCTTTTCGTCCGGGGAGACTTTTG
TCGGGGGAAGACTTCGTCACTTTTTGCCGACTATTTTCTACGATGCCACA
CACGTACACGTCACTTAGAACAAAAGGGATTAATGAATTAGAAGAAATTA
ATGAATTAGAAGAAATNTACGATGCCACACACGTACACGTCACTTAGAAC
AAAAGGGATTAATGAATTAGAAGAAATGGGTTTTTTTCTTGGATTCTGTG
CAAATCCAATCATTATCTATAAGACTTTCTTAGTAAAAGCATGGTAGAGA
ATGGTTGATAGTTTAGAATATCACTAAAATCCCCTTCTATGGCTCATTTT
TTATTATCTATATAAAAAATTATCGATGTAccttgaaattcaatgtttga
ttttttaaacttcATTTTCCCTGATATAAAGGGAAATACTGAGTGTTTTA
TTCTCATACATCATGAGGGACGTCGTAATTTCgtctacgatatttgaagt
atacAAGCACACTGATGGCCACGATCAACAACAAAATTAATCCCACTACG
ATAAAAATCCAAACTTTCGTTCC Run BLAST on NCBI transcript from alignment at scaffold_350:23008..28307+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060934 ID=TCONS_00060934|Name=TCONS_00060934|organism=Clytia hemisphaerica|type=transcript|length=5300bp|location=Sequence derived from alignment at scaffold_350:23008..28307+ (Clytia hemisphaerica)
GAAGATCCCAGCCTCGTCTACTGAAAATCGATTCTTCCCTTTTTCAGGTG
ATATGCTAtgaattgaccaaaatatttgcTTGTTTAAAAACTCTCAGTGA
AGTTATCAAATCGAACGATGATTGTATTTGTCatggaaatctaaaaaaat
gcaaactgaatttcactttttcctgAGAAAATTACTCTACTTTAATAGAA
TAGATTTAAAAACTTGAACTCTTTAAGGAAACTGTCGTGTCGTAAAGTTA
tagattttttctttcaggCAATGGAAAATTAGGCTTTGGCCTAGATAAAG
ACAAGAAGCAATTCTATTTGAAGACTGACACACACGGCTACATTCAGTCA
TTTGCACCCACTCTTGACCTCAAGATACAAGAGTCTCACATTGTGGAAGA
AAAGGCTGTGATTATGAATTTGAAAGCTGGACTTGTTATTCTGGCTACAG
TGTTTGATGTTGTAAGTAATCTTTGCATTTTCAAACACTCTTAATTTTCA
GTCACTCTAAATTAGAGCAAGAGACACTCATATTCGTTAAAATTAATTTG
ACTGTTCATTAATGTCGAACATTTAGCTTTTGTCAAGTTTGACAATTTTA
ATTCTGTTAAAATCCCTGGAAAATTAGGACAGAGAAAACTAATTTTAAAC
ATGATTTTATCTCTGCAAATATCTGCAGATTGTCTAATATAGGAAACGAA
AAGTTTAAAGTTTCTACACACTATTTCATGAAAACACAGTTTTTTGAAAC
TGTCGGTAACTATTTGGCCAGAGACCCTAAAAAATTTATGCTCGAACAGC
ACTAATTCAAATTTCCATCCTCTAGGAGCAAAGCTGTGTCCTTGTCGAGG
AAACATTTTTCGCACATCGCCTACACAGTGGTCTATTTCAACATGTCATC
AAAGTGAAAAATTCTGGACCCTTCTCCATCGATCTTGAATTATCCACAGC
AGACgtcaagaaactgaaaaaaattgaaaaaattcacaCAGCACATCACA
CTAACGGTCACCTAGCAACCATCAGtggtgaaatcaaaacaaagcgAAAC
AAAGAGAACAAAGAGGGCTTGGTCAAGTTTACATCTGTTCTCTCCAGCGT
TGATAACAGGGTCTTGAAAGTACCACAGAAAGGTGAAAAAAGTATGAAAC
TCTTGTCTTATACTGATTTCATCTTTCTGGAACAAGAGCCGCAAGAAGTT
GTGCCACCCACCAACAAGACTAGGACTGGAAGAGACGTCAAAGATACAGA
CATCATCGCTTTGACTGAGAAATCCAACACCATGCTCAAATCTCTCTCTA
AAGATCACGTTCAGGATCAACATGTCAAAGCATGGAGTGAAATTTGGACG
GTAAGACGgtactttcatttttaattttcgaatTCTCCAAAGCTACAAAG
CTACTCTAATTCATGGTTGAAATGAATGATGGGTAATCTGGTAGGATTGT
GCTCTAATAACGGCTTTTTGTTGGTTTAAACGTAAAAATTTTAGACCAAC
TAAAGTTGTCATCAGGGCCTGGTGGtactgattacccatgatttcTTTCG
AATGAACAGAAGCCTTTTTGTGCTTTAACTCCATCAAACTCCTCTTATAC
AAATCCTTAAAAAGATATTCTAGATACAATGGTCTATTGTGCAGTCATAC
TCCAACATCCATTTAAAAATGTATTTCTTATTTTGTTTTATAGACTGGTA
TTTCAATTTCATCAGATTCTGACCCAAATTCGCCATCACCATTACACGTC
AACTTGACTCAATACTACTTATACACCACACACAGTGGTAACTCAAccaa
aaaatcaaccaaatccGTCAATTGTTACACAGGGCCACCAACTTTACACT
ATCCAAAACATTGGGTGGTACCGACTAGTTTGAGCTCTTTAAGTTCATTG
ATGCAACTATGGGAGGATTTCTTTACACGGAATAATTGCCCTATATCTTC
TCTCACTGCTTTTTCATTACCTCAATTAATGGTATTGACTATCGTAGGCC
TACATTATCACAACAAGCAGCTACAAATGGCTCTCAACCCTTTGAACTTG
CGTACCAATATTTCATTACGACATGTATCCTTAGACTATTTCCATTCACA
AGATCAATTCGATCTGAAAGTTTTAGTGACCAATATCAAAACAGAACCGT
ATCAAATTTATGTTATGAATAATGGTAAACATTCGCCGAAGATTTTCGGT
TGTGGTAGTGCGTGTGAGCACGTTGTAGAGTTGGGCAGCTCCAGACTAAA
ATTCGTGATTCACCCAACAGATCCGGTGACTCCTCTTTTTTACATCTCCA
GCAACCGGACTCTTTTGGAGAAGATCCACCATTCAGACTTTATGCGAAAA
GCAATACATTCTGCGAAGGAGATCAAAGCGACTGCTCACCATCATCAGCT
TTCGCCTAAATTCTGGATCTCCGTTGTGGTGCTCATCGTtagttttcatg
ttattgttttgaaaatgatataCAATGAGTGTCGGAAGGGCCGGGGAACG
GTGCCACGCCGAGGTCCTTATAGTTAGAAGAGTGTCTCTTTTTATACAAG
GTTTTTATACAAGTGAAATTTAAAATAACCAACATATATATATTGGTGca
tatattttttgatgattaaTTATTGCTGTTGTTATTATCCTTGGAGCTCA
GGTGAGTGTTATCGCATTTATTCNAAAAATCAACCAAATCCGTCAATTGT
TACACAGGGCCACCAACTTTACACTATCCAAAACATTGGGTGGTACCGAC
TAGTTTGAGCTCTTTAAGTTCATTGATGCAACTATGGGAGGATTTCTTCA
CACGAAATAATTGCCCTATATCTTCTCTCACTGCTTTTTCATTACCTCAA
TTAATGGTATTGACTATCGTAGGCCTACATTATCACAACAAGCAACTACA
AATGGCTCTCAACCCTTTGAACTTGCGTACCAATATTTCATTACGACATG
TATCCTTAGACTATTTCCATTCACAAGATCAATTTGATCTGAAAGTTTTA
GTGACCAATATCAAAACAGAACCGTATCAAATTTATGTTATGAATAATGG
TAAACATTCGCCGAAGATTTTCGGTTGTGGTAGTGCGTGTGAGCACGTTG
TAGAGTTGGGCAGCTCCAGACTAAAATTCGTGATTCACCCAACAGATCCG
GTGACTCCTCTTTTTTACATCTCCAGCAACCGGACTCTTTTGGAGAAGAT
CCACCATTCAGACTTTATGCGAAAAGCAATACATTCTGCGAAGGAGATCA
AAGCGACTGCTCACCATCATCAGCTTTCGCCTAAATTCTGGATCTCCGTT
GTGGTGCTCATCGTtagttttcatgttattgttttgaaaatgatataCAA
TGAGTGTCGGAAGGGCCGGGGAACGGTGCCACGCCGAGGTCCTTATAGTT
AGAAGAGTGTCTCTTTTTATACGAGGTTTTTATACAAGTGAAATTTAAAA
TAACCAACATATATATTGGTGCatatattttttgatgaaattattgCTGT
TGTTATTATCCTTGGAGCTCAGGTGAGTGTTATCGCATTTATTAATTAAT
TATCACAAGAATTTATTTATATAATTGACTGGAGCTGAATTTTAAGGTCT
TACTTTACTAAACAAAATAatgattttacaatttttacccTTATTAATAT
TTGCATGcgatattttttttacaaagtgttggtttaaataaaattatttc
gAATAAAGGAAGCAAACTAAGGCCATTCAACTAAGGCCATTCAACTGGGT
ATTCCAGAAAATTTACCCACCCTGTCGAGGAGGTCATATTTATGGCCCTG
GGGATACCTTTAATTAAACCTGGATAACCCAAGGGTTTAAGTGGAATCTC
TTGAAATGGGcagacattttgaaaattggataaGACTCCAACGGGTTCTA
Cctcaaaaattgtcaaaaatccaggttgtgtattgaaattcaattcaaag
caGTTTGGCGTCCTCAACTTTAAAGCTATCTATTTGCAGAGGGTAAATCC
TTGGAACTGATTGTGTGCTGCATTGTGGGGCATCTTTAAATGACAAGTTG
AATaagttcaaaattgaaaaaaccttTAACTGTGGGTTTTTGCTATAAAA
TTGGAATGGAAGTAGGGGAGTTGATACTAAAATCTAGGACATCAGGatgt
ttagtgacgtggtggtatacccaaaaaacttaaaaatccttttagtacaa
TTTGAACAatgggtactaaaataccaaaaaggtggtatccagaataaaat
ttgaattttttttagtaaattggtactaaaattagtaattttcatgattt
tattaatctttttcacaaattttcgtGATGTTTTAGTACTTACGAGATTT
TAGTACCACCCCCCACTGATTGAGGAGGGGGAAACCAGGGATACGTTTGA
TAACTAAGATGTTTTCACAGTTCGTTCGAGAGATAGTATTAtgcgttttt
tatttttctaaaatatgatAAATTATGATAATGTGATTATAGCATGTATA
ATTGTTCTTTAGggagtttttttttcgaattagtCATTTTTACGTGAGGA
AGGAAGGTATATATTACATGAGGATCATTTTTAAAGTGatcaaattgaag
aaaatattttatataataCTCTTACAAACCTAAAATACTTGGTTATTTCT
ACATCATTTTATGTACAAAACTATTTACAGTATTAAATATCTGAACTTAA
ATAATTTGAGCTACAGTAGGTCCCGTAGAAGGAGGAAAACTCAGTCGGGT
AAATCTTTTCGTCCGGGGAGACTTTTGTCGGGGGAAGACTTCGTCACTTT
TTGCCGACTATTTTCTACGATGCCACACACGTACACGTCACTTAGAACAA
AAGGGATTAATGAATTAGAAGAAATTAATGAATTAGAAGAAATNTACGAT
GCCACACACGTACACGTCACTTAGAACAAAAGGGATTAATGAATTAGAAG
AAATGGGTTTTTTTCTTGGATTCTGTGCAAATCCAATCATTATCTATAAG
ACTTTCTTAGTAAAAGCATGGTAGAGAATGGTTGATAGTTTAGAATATCA
CTAAAATCCCCTTCTATGGCTCATTTTTTATTATCTATATAAAAAATTAT
CGATGTAccttgaaattcaatgtttgattttttaaacttcATTTTCCCTG
ATATAAAGGGAAATACTGAGTGTTTTATTCTCATACATCATGAGGGACGT
CGTAATTTCgtctacgatatttgaagtatacAAGCACACTGATGGCCACG
ATCAACAACAAAATTAATCCCACTACGATAAAAATCCAAACTTTCGTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060934-exon-scaffold_350-1491911889:23008..23054 | TCONS_00060934-exon-scaffold_350-1491911889:23008..23054 | Clytia hemisphaerica | exon |
| TCONS_00060934-exon-scaffold_350-1510915933:23008..23054 | TCONS_00060934-exon-scaffold_350-1510915933:23008..23054 | Clytia hemisphaerica | exon |
| TCONS_00060934-exon-scaffold_350-1575043694:23008..23054 | TCONS_00060934-exon-scaffold_350-1575043694:23008..23054 | Clytia hemisphaerica | exon |
| TCONS_00060934-exon-scaffold_350-1491911889:23275..23468 | TCONS_00060934-exon-scaffold_350-1491911889:23275..23468 | Clytia hemisphaerica | exon |
| TCONS_00060934-exon-scaffold_350-1510915933:23275..23468 | TCONS_00060934-exon-scaffold_350-1510915933:23275..23468 | Clytia hemisphaerica | exon |
| TCONS_00060934-exon-scaffold_350-1575043694:23275..23468 | TCONS_00060934-exon-scaffold_350-1575043694:23275..23468 | Clytia hemisphaerica | exon |
| TCONS_00060934-exon-scaffold_350-1491911889:23833..24357 | TCONS_00060934-exon-scaffold_350-1491911889:23833..24357 | Clytia hemisphaerica | exon |
| TCONS_00060934-exon-scaffold_350-1510915933:23833..24357 | TCONS_00060934-exon-scaffold_350-1510915933:23833..24357 | Clytia hemisphaerica | exon |
| TCONS_00060934-exon-scaffold_350-1575043694:23833..24357 | TCONS_00060934-exon-scaffold_350-1575043694:23833..24357 | Clytia hemisphaerica | exon |
| TCONS_00060934-exon-scaffold_350-1491911889:24701..28307 | TCONS_00060934-exon-scaffold_350-1491911889:24701..28307 | Clytia hemisphaerica | exon |
| TCONS_00060934-exon-scaffold_350-1510915933:24701..28307 | TCONS_00060934-exon-scaffold_350-1510915933:24701..28307 | Clytia hemisphaerica | exon |
| TCONS_00060934-exon-scaffold_350-1575043694:24701..28307 | TCONS_00060934-exon-scaffold_350-1575043694:24701..28307 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_350 | supercontig | scaffold_350:23008..28307 + |
Blast
The following BLAST results are available for this feature:
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