|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060939 ID=TCONS_00060939|Name=TCONS_00060939|organism=Clytia hemisphaerica|type=transcript|length=1282bp
GCTGTTGGTCCTCCAGGCTAAAGACACATCATCCAACACCTTGGACATCA
AGTACAGCAAACAAGAACTTGTCAACCTTCTTGAATCACTAAGCGGTGGC
GAAGACTCGTCAGTACCTGATTTCTTGTTCTTTAGTAAAGAAAGATTGGA
AAACTATACTGACACAAAAGGGCCACCACGTAATCGAACTGAACTGCGTC
GTGAAGATCGACCGAATCCTAAAAACCGAACGGATGCTGAAAGAACGCTG
GCGAAAGCTCAAAACCATTTATCAAGAGGTAAAGACGTGCAAGTGATCAC
CAGATGGGCCAGAATATTGGACATGTTACTTTTCGAAGACTTAGATCCAG
AAATCCAGGAATGCACGGCAATTAAAACGCTGGGTGGTATTAAACCAGAA
GTGCAGCCCTgcggaaaatcaaaaaaaataatcatcCGCAAAGTTCGTAG
ACGAAAACAACAACAGAAAAAGAAGCGTGAAGAATTAGCGATACAGAGGA
AGAAGAAAAGACAAGAAGCTTTGATgaagaagagaaagagagaaGAATTA
ATAAGAATCCAACCCTCGTTGGAGGAATTGGAAGATATCAAACATATTCT
GGAAGATAATTTGGAAGATGAGAATGCAGAGGAAGAACAAGATGAAAATT
TAGaggaagatgaagatgaagaaggcgAGAATCGATTCAAGAGAAGTTCA
AACCAACCACAAAACGACCAACCTAAAACCTCCAATCATCATCGCTCACG
AAGAAGCCTCGTACAGAATTTAGACGTCGTGCGCATGCGTAGATCTTTGT
CGTATACGTATTCTAATGAAGGGTCGTGTTTCGTTGAAGGTTCGGAAGGG
AGTACGAGCGATACTATCCTGCTTTGTGAAACTTGCTACAAAACGGTGGA
TTTCGGAGAGAGTGTagtTCCGCAGTACGCGAATAGCGTTGAATGTTCTG
ATAGCGCGACCATATGCATTAGTGGAGATGGAACATGCACGCAGAAGGTC
ATCTATTACTCCTTCAAGAAATTAGTGGATTCTGTTTCGAACACTTGGGA
AAGCTACCAGCAACCACTGAATGTCAGCTGTGAATGTGAGTGTATTGCGA
ATTCGATGACTCACATGTATATGGTTGGTGACTCAAATTAAAAACTCAAc
tcgtgaaaaaaaaaaaaaaaaaaaagattttacaagAATTGCATAATAAA
TGCATGATGAACTATCCAATGAAGTGGTTAGCACTGTGAAAAGTTGAGAA
AGCTCTTGAGTTTAATAATTTTTGCATCATTT Run BLAST on NCBI transcript from alignment at scaffold_350:43592..45129+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060939 ID=TCONS_00060939|Name=TCONS_00060939|organism=Clytia hemisphaerica|type=transcript|length=1538bp|location=Sequence derived from alignment at scaffold_350:43592..45129+ (Clytia hemisphaerica)
GCTGTTGGTCCTCCAGGCTAAAGACACATCATCCAACACCTTGGACATCA
AGTACAGCAAACAAGAACTTGTCAACCTTCTTGAATCACTAAGCGGTGGC
GAAGACTCGTCAGTACCTGATTTCTTGTTCTTTAGTAAAGAAAGATTGGA
AAACTATACTGACACAAAAGGGCCACCACGTAATCGAACTGAACTGCGTC
GTGAAGATCGACCGAATCCTAAAAACCGAACGGATGCTGAAAGAACGCTG
GCGAAAGCTCAAAACCATTTATCAAGAGGTAAAGACGTGCAAGTGATCAC
CAGATGGGCCAGAATATTGGACATGTTACTTTTCGAAGACTTAGATCCAG
AAATCCAGGAATGCACGGCAATTAAAACGCTGGGTGGTATTAAACCAGAA
GTGCAGCCCTgcggaaaatcaaaaaaaataatcatcCGCAAAGTTCGTAG
ACGAAAACAACAACAGAAAAAGAAGCGTGAAGAATTAGCGATACAGAGGA
AGAAGAAAAGACAAGAAGCTTTGATgaagaagagaaagagagaaGAATTA
ATAAGAATCCAACCCTCGTTGGAGGAATTGGAAGATATCAAACATATTCT
GGAAGATAATTTGGAAGATGAGAATGCAGAGGAAGAACAAGATGAAAATT
TAGaggaagatgaagatgaagaaggcgAGAATCGATTCAAGAGAAGTTCA
AACCAACCACAAAACGACCAACCTAAAACCTCCAATCATCATCGCTCACG
AAGAAGCCTCGTACAGAATTTAGACGTCGTGCGCATGCGTAGATCTTTGT
CGTATACGTATTCTAATGAAGGGTCGTGTTTCGTTGAAGGTTCGGAAGGG
AGTACGAGCGATACTATCCTGCTTTGTGAAACTTGCTACAAAACGGTGGA
TTTCGGAGAGAGTGTGTAAGTTTTCCTTCCTCATTCATCTTCTTTTCCTT
TGAAGATTAGACTTGGCATGCTTTGCTTTtatttctctcttcttttttgT
ATGAATATTTGCCCTGGTGCGTCTCATTGATGCTTAACTGTATACCTTAC
ACCATATCTACCTCGTTGGGGTAGGGGGACAAATAAGCACCCCCCTGCTA
GAATTTAGAAGGTGAAGGTTATGACGACGATTGCTAGTTTTTGTCTTTCA
TGtaactgttttcttttttagagtTCCGCAGTACGCGAATAGCGTTGAAT
GTTCTGATAGCGCGACCATATGCATTAGTGGAGATGGAACATGCACGCAG
AAGGTCATCTATTACTCCTTCAAGAAATTAGTGGATTCTGTTTCGAACAC
TTGGGAAAGCTACCAGCAACCACTGAATGTCAGCTGTGAATGTGAGTGTA
TTGCGAATTCGATGACTCACATGTATATGGTTGGTGACTCAAATTAAAAA
CTCAActcgtgaaaaaaaaaaaaaaaaaaaagattttacaagAATTGCAT
AATAAATGCATGATGAACTATCCAATGAAGTGGTTAGCACTGTGAAAAGT
TGAGAAAGCTCTTGAGTTTAATAATTTTTGCATCATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060939-exon-scaffold_350-1491911889:43592..44506 | TCONS_00060939-exon-scaffold_350-1491911889:43592..44506 | Clytia hemisphaerica | exon |
| TCONS_00060939-exon-scaffold_350-1510915933:43592..44506 | TCONS_00060939-exon-scaffold_350-1510915933:43592..44506 | Clytia hemisphaerica | exon |
| TCONS_00060939-exon-scaffold_350-1575043694:43592..44506 | TCONS_00060939-exon-scaffold_350-1575043694:43592..44506 | Clytia hemisphaerica | exon |
| TCONS_00060939-exon-scaffold_350-1491911889:44763..45129 | TCONS_00060939-exon-scaffold_350-1491911889:44763..45129 | Clytia hemisphaerica | exon |
| TCONS_00060939-exon-scaffold_350-1510915933:44763..45129 | TCONS_00060939-exon-scaffold_350-1510915933:44763..45129 | Clytia hemisphaerica | exon |
| TCONS_00060939-exon-scaffold_350-1575043694:44763..45129 | TCONS_00060939-exon-scaffold_350-1575043694:44763..45129 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_350 | supercontig | scaffold_350:43592..45129 + |
Blast
The following BLAST results are available for this feature:
|
