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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060940 ID=TCONS_00060940|Name=TCONS_00060940|organism=Clytia hemisphaerica|type=transcript|length=623bp
GTGTGGTTGGCTGTAGAAGGTTGTATGTTTATAGAGAAGATATGAAGATT
CGATCTTTGATATCGATCTGGCTGTTGATCCTCCTGACTAAAGACACATC
ATCCAACACCTTGGACATCAAGTACAGCAAACAAGAACTTATCAATCTTC
TTGAATCACTAAGCGGTGGCGAAGACTCGTCAGTACCTGATTTCTTGTTC
TTTAGTAAAGAAAGATTGGAAAACTACACTGATACAAAAGGGCCACCACG
TAATCGAACTGAATTGCGTCGTAAAGATCGACCGAATCCTAAAAACCGAA
CGGACGCTGAAAGAACGCTGGCGAAAGCTCAACACCGTTTATCAAGAGGT
AAAGACGTGCAGGTGATCACCAGATGGGCCAGAATATTGGACATGTTACT
TTTCGAAGACTTAGATCCAGAAATCCAGGAATGCACGGCAATTAAAACGC
TGGGCGGTATTAAACCGCCCTGcggcaaatcaaacaaaacaatCATCCGT
AAAGTTCGTAGACGAAAACAACAACAGAAAAAGAAGCGTGAAGAATTAGC
GAtacagaagaagaagaaaagacaagaagctttgaggaagaaaaGAAAGA
GAGAAGAATTAGGAAGAATCCCA Run BLAST on NCBI transcript from alignment at scaffold_350:49227..51341+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060940 ID=TCONS_00060940|Name=TCONS_00060940|organism=Clytia hemisphaerica|type=transcript|length=2115bp|location=Sequence derived from alignment at scaffold_350:49227..51341+ (Clytia hemisphaerica)
GTGTGGTTGGCTGTAGAAGGTTGTATGTTTATAGAGAAGATATGAAGATT
CGATCTTTGGTGAGAATATTTTTTCGATTAAAACTTTTTGGTATTTATAC
AGAGGTTCTTTCTTACCGGAAAGATTTCTATCCTATTTGAATATTGAGAT
CTCGGACAGTTTGTGTCAACGGAGCAGACTTAGTTTTGGCCTTTTTTATC
CCCGGATGCCTAAgctcaaaactgaaaaaaaatattacccCATCCATGCG
ATTTTCAGTTATAAATTTGATTTAGATTCTTAAGTTTGCAATATATgtag
gggggggtttcagggggtacccgattccgcaattccgtcaattttttctc
caatttccgtcaaaccgtcttaaattgaaccaaaattccgtcacccaaaa
ttcctttgaaattcaatatttttgtcgaaaattccgcaaattttgaataT
CTTTTactaattccgaaattccgcaaatttttttgctaaattccgttttt
ccgcactaaaattgtctaattttccgtctccgtcagagaacccaatttcc
gtaattccgattccgctcctccgccaaccgtgAAAACCCCCCTATGtaga
ttgcttgaaaaagaaaagttacTTGATTTGTTTCATGCAAATTATACACT
TAATTGTATAAAAGAATAATTCGAGGCCTGTTTtccctaaaatcaaaata
aatcgatCTCGGAAGGTGGTACAATTACAATTACACCACACTACTCTAtg
ctttcatttttgatttttcatctcCGTATATTAACACACCCTGATGTGTC
ACAGACCGGCTGAAACCCCAATCCACTAGAATATGGCTAAATGTTTGCCC
CCGCTAGGAAGAATATCCTACAAGCTCAGTCCCGCTGGGAAATCGACTTT
GAattcactccaaaaccatccccactggattttttaagccTGGAGCAGta
caatttttatccccatcgGGATTTTGATAAGAACTTTTACCCCTGCTGTG
GGATAAAGCTCCACCGAGGCTGTAGGACAGGGGTCTATTAAAACTTAGTA
TCACAAATTATACTTGGGTAAACTAAGTGGAAGTGACCTACCTCTATAAC
AACATGCCATAGAGCAACAACCAAGAGAACGGTTGTAAAATATACTCAAC
ATAATAAACCAAACCAAGAAATCCAGCAAATTAACTTATAAatcacaaaa
agaaaaatttccatTGAGAGCAAATGAGATCGTGGTGAATTAgctttgaa
aacattttaactTTATAGCTGGAATCATTCGGTGTATTTTGTAAATATGA
GACAAAATAAGAGCTTGAAAACTGATACCGCCCTTTCAAATAATagaaag
ttgacaaaaaaatcatttcattttatagCAGGTGTTAATAAATTTTTTGG
TTCGTATTATAAAATGAAGCAAcaataaaatagaataaaatgaaggataa
atttgaaaaagtttttgccTTTAACTGATTTGAAAGTTTTATATGAATAA
GATATGATGAGAAAATacttttgacatatttttttgcttttaccTATTCA
GATATCGATCTGGCTGTTGATCCTCCTGACTAAAGACACATCATCCAACA
CCTTGGACATCAAGTACAGCAAACAAGAACTTATCAATCTTCTTGAATCA
CTAAGCGGTGGCGAAGACTCGTCAGTACCTGATTTCTTGTTCTTTAGTAA
AGAAAGATTGGAAAACTACACTGATACAAAAGGGCCACCACGTAATCGAA
CTGAATTGCGTCGTAAAGATCGACCGAATCCTAAAAACCGAACGGACGCT
GAAAGAACGCTGGCGAAAGCTCAACACCGTTTATCAAGAGGTAAAGACGT
GCAGGTGATCACCAGATGGGCCAGAATATTGGACATGTTACTTTTCGAAG
ACTTAGATCCAGAAATCCAGGAATGCACGGCAATTAAAACGCTGGGCGGT
ATTAAACCGCCCTGcggcaaatcaaacaaaacaatCATCCGTAAAGTTCG
TAGACGAAAACAACAACAGAAAAAGAAGCGTGAAGAATTAGCGAtacaga
agaagaagaaaagacaagaagctttgaggaagaaaaGAAAGAGAGAAGAA
TTAGGAAGAATCCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060940-exon-scaffold_350-1491911889:49227..49285 | TCONS_00060940-exon-scaffold_350-1491911889:49227..49285 | Clytia hemisphaerica | exon |
| TCONS_00060940-exon-scaffold_350-1510915933:49227..49285 | TCONS_00060940-exon-scaffold_350-1510915933:49227..49285 | Clytia hemisphaerica | exon |
| TCONS_00060940-exon-scaffold_350-1575043694:49227..49285 | TCONS_00060940-exon-scaffold_350-1575043694:49227..49285 | Clytia hemisphaerica | exon |
| TCONS_00060940-exon-scaffold_350-1491911889:50778..51341 | TCONS_00060940-exon-scaffold_350-1491911889:50778..51341 | Clytia hemisphaerica | exon |
| TCONS_00060940-exon-scaffold_350-1510915933:50778..51341 | TCONS_00060940-exon-scaffold_350-1510915933:50778..51341 | Clytia hemisphaerica | exon |
| TCONS_00060940-exon-scaffold_350-1575043694:50778..51341 | TCONS_00060940-exon-scaffold_350-1575043694:50778..51341 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_350 | supercontig | scaffold_350:49227..51341 + |
Blast
The following BLAST results are available for this feature:
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