TCONS_00060942 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060942
Unique NameTCONS_00060942
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length326

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060942 ID=TCONS_00060942|Name=TCONS_00060942|organism=Clytia hemisphaerica|type=transcript|length=326bp
TTGAAGGTTCGGAAGGGAGTACGAGCGATACTATCCTGCTTTGTGAAACT
TGCTACAAAACGGTGGATTTCGGAGAGAGTGTAGTTCCGCAGTACGCGAA
TAGCGTTGAATGTTCGGATAGCGCGACCATGTGTATCAGTGGAGATGGAA
CATGCACGCAGAAAGTCATATATTATTCCTTCAAGAAATTAGTTGATTCC
GTATCGAACACTTGGGAAAGCTACCAGCAACCACTGAATGTCAGCTGTGA
ATGTGAATGTATCGCGAATTCAATGACTCACATGTATATGGTTGGTGACT
CAAATTAAAAACTCAACtcgtgaaaa
Run BLAST on NCBI

transcript from alignment at scaffold_350:51589..52167+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060942 ID=TCONS_00060942|Name=TCONS_00060942|organism=Clytia hemisphaerica|type=transcript|length=579bp|location=Sequence derived from alignment at scaffold_350:51589..52167+ (Clytia hemisphaerica)
TTGAAGGTTCGGAAGGGAGTACGAGCGATACTATCCTGCTTTGTGAAACT
TGCTACAAAACGGTGGATTTCGGAGAGAGTGTGTAAGTTTTCCTTCCTCA
TCTTCTTTACCTTTGAAGATTAGACTTGGCATgctttgcttttatttttt
ctcttcttttttgtaTGAATATTTGCCCTGGTGCGTCTCATTGATGCTTA
GCTGTATACCTTACACCATACCTGCCTCGTTGGGGTAGGGGGACAATAAG
CACCCTCTGCTAGAATTTAGAAGGGGAAGGTTATGGCGACGATTgctagt
ttttttcttttatgtaaCTGTTTTCTTTCTATTAGAGTTCCGCAGTACGC
GAATAGCGTTGAATGTTCGGATAGCGCGACCATGTGTATCAGTGGAGATG
GAACATGCACGCAGAAAGTCATATATTATTCCTTCAAGAAATTAGTTGAT
TCCGTATCGAACACTTGGGAAAGCTACCAGCAACCACTGAATGTCAGCTG
TGAATGTGAATGTATCGCGAATTCAATGACTCACATGTATATGGTTGGTG
ACTCAAATTAAAAACTCAACtcgtgaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038256XLOC_038256Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060942-exon-scaffold_350-1491911889:51589..51670TCONS_00060942-exon-scaffold_350-1491911889:51589..51670Clytia hemisphaericaexon
TCONS_00060942-exon-scaffold_350-1510915933:51589..51670TCONS_00060942-exon-scaffold_350-1510915933:51589..51670Clytia hemisphaericaexon
TCONS_00060942-exon-scaffold_350-1575043694:51589..51670TCONS_00060942-exon-scaffold_350-1575043694:51589..51670Clytia hemisphaericaexon
TCONS_00060942-exon-scaffold_350-1491911889:51924..52167TCONS_00060942-exon-scaffold_350-1491911889:51924..52167Clytia hemisphaericaexon
TCONS_00060942-exon-scaffold_350-1510915933:51924..52167TCONS_00060942-exon-scaffold_350-1510915933:51924..52167Clytia hemisphaericaexon
TCONS_00060942-exon-scaffold_350-1575043694:51924..52167TCONS_00060942-exon-scaffold_350-1575043694:51924..52167Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_350supercontigscaffold_350:51589..52167 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
83.1713	84.4847	67.3575	50.5279	11.3879	5.49494	41.0582	32.6497	32.1036	24.8662	54.4456	48.5973	19.3459	19.8429	0.514395	0.945964	0.257805	0	33.0253	37.4541	0.356239	0.33775	27.2717	19.5598	0	0	1.01568	2.19232	9.79601	16.0383
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060942 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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