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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060943 ID=TCONS_00060943|Name=TCONS_00060943|organism=Clytia hemisphaerica|type=transcript|length=1689bp
aTGGGCTACGAGAGAACAAAAATAGAGGTACCTGTTTCCTCCACATGCTC
CAACATTGTTTATGGATAGATTTGCCACAGCCATCTTTGCACCAATCCAA
ATCCTTCTCATTGGCTTCAATCAACGCTTCGAAACACACACCACAATCAT
CGTCATCGGTGATCTCCTTCCGTTTCCCGTCCTTCTCTTTCTCCTCCGGT
GCCGGCTTCTCTCCGAACACGGCTCTCACTTCAGTTGTGGCTAAAACTGC
AGCATCATTTGCAGTTGATACGTTGGCGAATATCGATTCCAGCTCTGTGG
ACAAGAGCGCAGCTTGAATGATAAGAGATGACGTCCGCGATTNCACTGAA
GCATCATTTGCAGTTGATACGTTGGCGAATATCGATTCCAGCTCTGTGGA
CAAGAGCGCAGCTTGAATGATAAGAGATGACGTCCTCGATTGCTTGAGTA
CGCGAACCATTACAAAGATAATGTGTTTGCAGATGTTTCCTTTCTGATGA
TCAGGGCAGGTACATTGCACAAGACGTCCGATAGTGACACGGTAGACGTT
TCCAGTACTCCCAAGCACGGTGAATCCAGCACGAATGGCACCTATTTCAT
CACGAATAATCTCGTCACGTTTGACCAGGAATAACCGCTGGCTTAATGCT
CGACCAATGCGGTCACTGGCAGCACCCATAGATGTTCGCAAACGTTTCAA
ACGTTTTTCAGGTGGCGGAGGcttctcttttttcttcttgagaggttttt
cagatttttctacTTTTGGTGTCTTCTTTTTTGGTTTAGTGTCCGACATC
TCATACTTTGGAACTTTTACTTTTGTGTAGCCCTCATTTTTGCTACAACT
AGCACTTTCATCGTCAACATTTTTCGACTTGCGTTTTTGACCTTGTTTGG
TTTCAGTAGGGCAATAATCATGATCTgtaattttgtttgatttgccaGTG
AGTGGTTGAAGAGCCGCAATAGTAGAGTACAGCTTGCTTTTGGGTATTTG
AGCTGCTGTAATAGTTGAAAACGACTTGACAGTTGATATCTGAGATGCTA
TATTGGAATAAACCTTGCTAGTGGGTGGTTGAAATGCCGAGGATGGCAAA
ACTGATAAGGGAACTGAGCCAGAATAAGATGGTCTAAGTGGTTTGATAGC
CACTGGTTTGGGCGATGAAGATTTTATAACCAACGCTTTGGACGGTACAG
CTGAGGATCCTTCAACTGGAGAAACTATAGTTGATGCGCCAGGTAGACTG
GCTGATTTAGATTGTGTGGATGAAGGAGCATTTGCAATATTTGGAGCTAG
TCTATTAGGGAGCACTGATAGTGGAACAACAGATTTGTTTGGTTGTGCAG
TTGTGGAAGATGAAGCTACCTTGAGAGAAGAAGGAGAtggaaaaatcggt
tttcttgaTGTTGATGAGGTTGATAACCTTTTGGCGAGTGCGGTTGAAAC
AGCTTTGTTCAATGCGGCTTTTATTTTGGCTGAAGATGGGTGGTTAGCGA
GGCTTGGTGGGAGAACTACTTGTGGTGAGCTATTGTTGACATTGATGGTG
GATAGAGGAATGACGAGCTTGGTTGTTCCTTGTGGTTGACTAGGCACGTT
GGACACTGAGGGTCCGCCTCTTGAACGGAGTGGATATTTCTTTAATTCTT
ctttcattgttattttttactttatttaaatagtctaaa Run BLAST on NCBI transcript from alignment at scaffold_350:111250..113005+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060943 ID=TCONS_00060943|Name=TCONS_00060943|organism=Clytia hemisphaerica|type=transcript|length=1756bp|location=Sequence derived from alignment at scaffold_350:111250..113005+ (Clytia hemisphaerica)
aTGGGCTACGAGAGAACAAAAATAGAGGTACCTGTTTCCTCCACATGCTC
CAACATTGTTTATGGATAGATTTGCCACAGCCATCTTTGCACCAATCCAA
ATCCTTCTCATTGGCTTCAATCAACGCTTCGAAACACACACCACAATCAT
CGTCATCGGTGATCTCCTTCCGTTTCCCGTCCTTCTCTTTCTCCTCCGGT
GCCGGCTTCTCTCCGAACACGGCTCTCACTTCAGTTGTGGCTAAAACTGC
AGCATCATTTGCAGTTGATACGTTGGCGAATATCGATTCCAGCTCTGTGG
ACAAGAGCGCAGCTTGAATGATAAGAGATGACGTCCGCGATTNCACTGAA
GCATCATTTGCAGTTGATACGTTGGCGAATATCGATTCCAGCTCTGTGGA
CAAGAGCGCAGCTTGAATGATAAGAGATGACGTCCTCGATTGCTTGAGTA
CGCGAACCATTACAAAGATAATGTGTTTGCAGATGTTTCCTTTCTGATGA
TCAGGGCAGGTACATTGCACAAGACGTCCGATAGTGACACGGTAGACGTT
TCCAGTACTCCCAAGCACGGTGAATCCAGCACGAATGGCACCTATTTCAT
CACGAATAATCTCGTCACGTTTGACCAGGAATAACCGCTGGCTTAATGCT
CGACCAATGCGGTCACTGGCAGCACCCATAGATGTTCGCAAACGTTTCAA
ACGTTTTTCAGGTGGCGGAGGcttctcttttttcttcttgagaggttttt
cagatttttctacTTTTGGTGTCTTCTTTTTTGGTTTAGTGTCCGACATC
TCATACTTTGGAACTTTTACTTTTGTGTAGCCCTCATTTTTGCTACAACT
AGCACTTTCATCGTCAACATTTTTCGACTTGCGTTTTTGACCTTGTTTGG
TTTCAGTAGGGCAATAATCATGATCTgtaattttgtttgatttgccaGTG
AGTGGTTGAAGAGCCGCAATAGTAGAGTACAGCTTGCTTTTGGGTATTTG
AGCTGCTGTAATAGTTGAAAACGACTTGACAGTTGATATCTGAGATGCTA
TATTGGAATAAACCTTGCTAGTGGGTGGTTGAAATGCCGAGGATGGCAAA
ACTGATAAGGGAACTGAGCCAGAATAAGATGGTCTAAGTGGTTTGATAGC
CACTGGTTTGGGCGATGAAGATTTTATAACCAACGCTTTGGACGGTACAG
CTGAGGATCCTTCAACTGGAGAAACTATAGTTGATGCGCCAGGTAGACTG
GCTGATTTAGATTGTGTGGATGAAGGAACATTTGCAGNAAACTAGAGTTG
ATGCGCCAGGTAGACTGGCTGATTTAGATTGTGTGGATGAAGGAGCATTT
GCAATATTTGGAGCTAGTCTATTAGGGAGCACTGATAGTGGAACAACAGA
TTTGTTTGGTTGTGCAGTTGTGGAAGATGAAGCTACCTTGAGAGAAGAAG
GAGAtggaaaaatcggttttcttgaTGTTGATGAGGTTGATAACCTTTTG
GCGAGTGCGGTTGAAACAGCTTTGTTCAATGCGGCTTTTATTTTGGCTGA
AGATGGGTGGTTAGCGAGGCTTGGTGGGAGAACTACTTGTGGTGAGCTAT
TGTTGACATTGATGGTGGATAGAGGAATGACGAGCTTGGTTGTTCCTTGT
GGTTGACTAGGCACGTTGGACACTGAGGGTCCGCCTCTTGAACGGAGTGG
ATATTTCTTTAATTCTTctttcattgttattttttactttatttaaatag
tctaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060943-exon-scaffold_350-1491911889:111250..112491 | TCONS_00060943-exon-scaffold_350-1491911889:111250..112491 | Clytia hemisphaerica | exon |
| TCONS_00060943-exon-scaffold_350-1510915933:111250..112491 | TCONS_00060943-exon-scaffold_350-1510915933:111250..112491 | Clytia hemisphaerica | exon |
| TCONS_00060943-exon-scaffold_350-1575043694:111250..112491 | TCONS_00060943-exon-scaffold_350-1575043694:111250..112491 | Clytia hemisphaerica | exon |
| TCONS_00060943-exon-scaffold_350-1491911889:112559..113005 | TCONS_00060943-exon-scaffold_350-1491911889:112559..113005 | Clytia hemisphaerica | exon |
| TCONS_00060943-exon-scaffold_350-1510915933:112559..113005 | TCONS_00060943-exon-scaffold_350-1510915933:112559..113005 | Clytia hemisphaerica | exon |
| TCONS_00060943-exon-scaffold_350-1575043694:112559..113005 | TCONS_00060943-exon-scaffold_350-1575043694:112559..113005 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_350 | supercontig | scaffold_350:111250..113005 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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