TCONS_00060946 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00060946
Unique Name	TCONS_00060946
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2246

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_350:134164..141379+
coding sequence from alignment at scaffold_350:134164..141379+

transcript sequence

>TCONS_00060946 ID=TCONS_00060946|Name=TCONS_00060946|organism=Clytia hemisphaerica|type=transcript|length=2246bp
CTGGTATCAGGTAAAAGTAATATGGCTGCTcggtttaattttttctttag
ttttttttggaatttcttcaaataataaaactcaaaaagtctcaaaaacg
gaagaagaagaagattatAGATATGACTGATGCAAAAGACAGGGTTTTTC
TCAAGGCCAGAAGGAGAAAAACATCAAGTAATGAAAGTGGTAGTCCTGAG
AAGGTATTATACGATGTCAAGTATGAAGAAAATGGAGATATCCCTGAAAT
TAATGAGTCTGAGGAATTAGAAGAGAAAGATTTGATCAAAAGAATGAGGC
TTGAATTGAAGAGGGCTGGGGAAAACagcaagaaaaatgaaaatgagatA
GATGAACTTAAACAAACTGTCCATGTTTTATACAAATCTCTTGAGGAGTC
AAAGCAATGGCAATCGACAGTCTACGCNAACagcaagaaaaatgaaaagg
agATAGATGAACTTAAACAAACTGTCCATGCTTTATACAAATCTCTAGAG
GAGTCAAAGCAATGGCAATCAACAGTCTACGCACAAATGCAACAAATGAC
TGAATTCAACAATCAAATGTCACAGAGATTAAATGAATTGAATGTGGAAA
TTAAAACACTGAAGCATGATAATGATGAATTTAAGCCTAAAGATGCTCCC
TCTGAAAGTGTTACTAAAATGAAAGAAGCTGTTGTTTATGGAGATTCTAC
TTCCGCCAAGAAGCTTTCAACTCgccgaaaattgacaaaaactcATCAAA
TCCCAAAAACTGACATTGTTCAAAAGCCCAATGGTAAATCTTCTAATAAA
GAATCTAGTAATATTTGTAAACAAAAGCGAACGGATATTGAGAAAATTGT
TAAGGAGGAGAAAAAAGAAACTGACAACTCTACCGTTTCTGAAAATGGAA
AGGTGGACAAACTAAATACCGAGAGAATAAAAATTGTAGAGCCACCAAAT
CTGAAAGAGGAAGATGAGACAACTAAAGAGGGAGGTACTTTGAATATTGA
AGAAGAGCTCAGAAATGCTGCAGAAGAAGCAATGTCCAAATCTGGATTTG
CTTACGATGAAAGTTCTGGAATGTATTACAACTGGCAAAGTGGAATGTAT
TATGATCCAAACAGTCAGCTGTACTATGACCACAAGAATGGTGTATACTA
TTACTACGATCAAGAAAAAGAAACGTATATATTTCACTCCCAAATTAAAG
TTGCTGAGGAAAAGACAGATGAATCTGACTCGAATGATCAGAAAGATGGC
CAACTATCAGATGGTGAAATTCGTTCTGAACCTGTGTCACCTGCAGGTCC
TACTCCAGTTATTGACCCGTGCATCAGGGCTATGATCGTCAAATCCGAAT
CAGTTGATGTTGGTTCTTTATACATAGTGACTTGTCAGGGAGGAAGCATT
GGGAAAGACCCCTCAAATACTATTTGTTTAGCTGATGATGAGCTCGCCAG
TCGCTCTCATGCTAAGATCCtatatgaaaatgaaagcaaaacgtttttta
tacaagatttgaaaactcaaaatggCACTTATATCAATGATGAACGAATA
GCGGATGCTAGATGTGAATCTGAACCTATAGAAGTCACACATCGTGATTT
TATTCGAATTGGCGAAACTACAATTTCTTTTCACGTCCATACTGGAAACG
AGACGTGTTTTGATTGCGAGCCTGGTAATATACAAGCCATTCTAGAAGCA
GAAAAAGAGAAGGCGACCAGGGAAGATTTGAATAAACAGAGAAAACATGA
AGTCAAAAGTATGATGAAAAAATATGGTTTATCCAAAGGCTACATACCTA
AAAAATTGATCGAATCTGTTCCCGATCGTGCAGCAAGACGTCGTAAGGAA
GTCGGGAGTGATCCTTATGAGAATATTTTGAGACCAGTCGAAAAAGCATC
TGTACATAAAGAAATATCTGATGAGAATATCGGACATAAGATGCTGGCTA
AAATGGGATGGAAATCTGGCGAAGGGCTTGGCAAATCACAACAAGGTATT
GCAGAGCCAATTGGCGTGCAAGTGCATGGAAAAAACAAAGGGTTGGGGTT
CGGTTCTACTGCACCGATTGATAGCAAGCCGTCAAGAAAACAAGATATAT
TGAACAAGACTAAGGAAAGATtcgaaaagatttcaaaataatacAATTTC
TCATCATATTGATtcagatttttctaaaatttttactttaggcTTTCAGT
TGTGCTCCCTTTTCGGAAGTATCTCCGTGAATTAAAGACAGCAAAG

Run BLAST on NCBI

protein sequence of TCONS_00060946-protein

>TCONS_00060946-protein ID=TCONS_00060946-protein|Name=TCONS_00060946-protein|organism=Clytia hemisphaerica|type=polypeptide|length=672bp
MTDAKDRVFLKARRRKTSSNESGSPEKVLYDVKYEENGDIPEINESEELE
EKDLIKRMRLELKRAGENSKKNENEIDELKQTVHVLYKSLEESKQWQSTV
YXNSKKNEKEIDELKQTVHALYKSLEESKQWQSTVYAQMQQMTEFNNQMS
QRLNELNVEIKTLKHDNDEFKPKDAPSESVTKMKEAVVYGDSTSAKKLST
RRKLTKTHQIPKTDIVQKPNGKSSNKESSNICKQKRTDIEKIVKEEKKET
DNSTVSENGKVDKLNTERIKIVEPPNLKEEDETTKEGGTLNIEEELRNAA
EEAMSKSGFAYDESSGMYYNWQSGMYYDPNSQLYYDHKNGVYYYYDQEKE
TYIFHSQIKVAEEKTDESDSNDQKDGQLSDGEIRSEPVSPAGPTPVIDPC
IRAMIVKSESVDVGSLYIVTCQGGSIGKDPSNTICLADDELASRSHAKIL
YENESKTFFIQDLKTQNGTYINDERIADARCESEPIEVTHRDFIRIGETT
ISFHVHTGNETCFDCEPGNIQAILEAEKEKATREDLNKQRKHEVKSMMKK
YGLSKGYIPKKLIESVPDRAARRRKEVGSDPYENILRPVEKASVHKEISD
ENIGHKMLAKMGWKSGEGLGKSQQGIAEPIGVQVHGKNKGLGFGSTAPID
SKPSRKQDILNKTKERFEKISK

Run BLAST on NCBI

transcript from alignment at scaffold_350:134164..141379+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00060946 ID=TCONS_00060946|Name=TCONS_00060946|organism=Clytia hemisphaerica|type=transcript|length=7216bp|location=Sequence derived from alignment at scaffold_350:134164..141379+ (Clytia hemisphaerica)
CTGGTATCAGGTAAAAGTAATATGGCTGCTcggtttaattttttctttag
ttttttttggaatttcttcaaataataaaactcaaaaagtctcaaaaacg
gaagaagaagaagattatAGATATGACTGATGCAAAAGACAGGGTTTTTC
TCAAGGCCAGAAGGAGAAAAACATCAAGTAATGAAAGGTGAGTGATTTTT
GGTTGCTTGATCTTTTTTCAGTTTCCGGGGATGTTGGCAGacgaaaaata
tataaatattaaagaggggtcactcacatatcaatTCTTCCCACAACCCA
GTCTGGAAAGGAGGGAAATGTTACGCCGGAGCTGCGCCAACTTAACTGGG
AAAAGTTAAAGGCAGCAAATCTCAAACCTCAAATCTACGCCGGAGATATA
TCCTGCGCACAAgctgcaatagaccttttttcaaagaggccaccctgttg
aataattatgtactccagcagaaaaacaatgataaaaccacacataatta
ttacaatatgcatgatacagtaattatgcatggctctatcattgctttta
tggctggactacatataattattcaacaggacgtcctctttgaaaaaagg
tctatttccagACTGGCCCACAACTAAGGTCAAATTGACGCGAAGGGGTG
GGGGGGGTTAGAGTCtgtgacgctaagaaatttcaccatAAATATCGATT
TTTATTTTGAGACGTGAAACtcgcatagccatcaaatgattgatcaatca
aagcagcaaaatttcaaaacaaatgaactacacagCTCCACTCGCATATT
CCAGATaatactctaccatttttgttttgatttaactttgtattttaatg
accagacaggttattcatttgagagctatgcatgtttgcctccactgatg
caagttacccaatctcacggtattaaACGCTAACGAATGATGTTTTGTAT
CAATTTTTAATCAATATCATCGATTGATATCATcgattatagaccttttt
tcaaagaggaagtcctgttgaataattatgtagtccagctataaaaacaa
tgatagagccatgcataattactgtatcatgcatattgtaatagtTATGC
ATGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNttcaacagggtggcctctttgaaaaaaggtctatta
attgAAGGAATCGATGGAATCGATAATATGAGGTAATCAAATAAGGTAAG
CCTATCTATCGATATATAATCGATGAGTAAGTGATATTAATCGATACTGA
AAAGtaatcgatattaatcgatGGCTCATCATCGATACTAATTgatattc
acaattttttttaccttgaCGAGCAATTGATTTTAATCAATGATCGATTT
TATAGATTATGACCGTCtggtctgtaacaggggggaggacgacacaggat
ttccaagGGCAAAagtttcaccaaaattcaaaatttccaaggcaagagaa
gaaaatgtatgaatttctaaggcaattgaattaaaaatggctaaaaagag
tggaatttcagACACATTTTGcgaaagtacatggattttcatcagaattt
ccgaccaccactggaaaaaaaaatcatttccgaggctagaaaatttttta
aaatctacGTCATCCgacgggggtaacaaaaattttatggaatggcccat
tttcAAGTTAccctatttgcagcactgtcCCACTGGACATAGTACGGTGG
TGCATTCCAGAAAGCTTAAATCCCACTGCAGCCCACTGTAATAGTTGAAC
TTCTAATATTTTGCTTGATTTGCAGATGTAGATTTTTAGGATCATATTTT
GGTTTTCATGTttttagatgctgttttagagctttaattAATACTAGCCt
gtccgggaactgtcgaaatggcgATCATGTGCCACGATAAAGTCTTTATT
GTCATCGAACTTTAATcataatcaaactttttaccagcctggagatccat
gatATGATTTCTTAATTATATACTGATTgggaaatatatagcatggttaA
GATTATCTAATTCTGTTAttctttcactggtcacactttctagAGAAAAC
Gtaagttccgaaatttggtttttattttagtaagtgaggacagcgctaaa
ttcaaatttcccactgaaaattttttgaggcCTCACAGGCCATACCCGTC
CTTTATATATCAGATTATAAAGATACAAGACGTATCTCCTGTCTAACTTT
CTACTGACTGAACTAATTGAactcttttttcttcaaaaattgttcgatta
gGTTAGATTAATTcaattgttcgattggtttgacaagttcgattgattgg
gTCTGGATAAAAGTAGTATAAACCCTCTGCAAATAGTAATGGGCCATTCC
CATAATTTGTGTGTAACAGGGGTGGAGCAAACGACACGGAATTTCCaaag
ggcaaaagttttcaccaaaattcataACCTCCAAggcaagagaagaaaat
gtacgAAAGTTTTTCTATACCCTAAACTACATTAATGTCTTGTTATATTA
TAGCTGAATTTGAGAAGAAGACTTATTTTATTTACTCATGATAAGTAAAG
ATTAAACTTTAGCCTTGATCCAGAAAGTAACAACTTAGTAGATGTACTGG
GGGTACATCATAAATCTCCTCCCCCATCAGTCTTAGTCCCTCCAACATtt
gagaaatgaaaaaatatctgCCCATcataaatttggcaaaattctGAATG
GGTTTGATGTGGGGATGAAACCATGATTTCCACTATTCGTtgtaaaaagc
attttttgtgctcagcgttcatttttggacctaccccggtggaggtccta
taaattaacctgtgtttgttcgttcgttcgtccgtccgttcttttgtctg
ttaccaacttttctcaggattgaatcataggaatcttttgatttttggtg
caaaatggtggtggccaaaatgtgacggagcctgattttcgagaaaaaca
aattttgggcaaatttgggccaaaaaacggctaaaaaacgggttttttgg
actttgtgaaaaattggatcattaatttttttcgattttttgcatgaaag
tagggtaccatcataggtaaaagatggctcaagcagaattttgcaaaaaa
aaattttgttggcgcaaaaaacgcatgtttatctataagaattactatta
ataagcatacatcaatgttcttagtcaaattactcaatttttttatggga
tagattttttttgctcatgaaggcttacttttgaagaatatgtgtgttta
agacaggaaattttagttgcttggcgtgttcttatagaaaaactggccaa
attcgatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNttatcaattacttaggtattagcttttctcgagat
tggctttttcattctttatgatattttgcacaaagatgcataactataaa
ccttcGAATGTGACAGAGTcagactttcaaataaaaatgttattgggcaa
atttgggccaaaaaaaacggctaaaaaacgggtttttggacttcgtgaaa
tattggatcattgtttttttctgatttttggcatgaaagtaggtaaaaga
tggctcaagcagatttttgtaaagaaagaatttttcggctcaaaaaacgc
atctttatctataagaatcactattaataagcatgaaagaatatttcaag
agcatgaaattttggtttctaaacttttttttttataagaaacaaacaac
taagtaatttaaatagattgtcactatttgtgttctgaatgattgtttaa
tggtcacgtcatgtagatatcaattataaatgtgttaaatgcataaccag
gtaggtccataaaagtatcacttgttcttttcaaattttagtcttCAATT
TTAATTAGAAGAACAAGTATTCACTAATAATGGTTACGATTTTTCCACAG
GACATGTAAAACTATTAATAGGagtctaaattttttttctccagaagttc
aaaaagtttgttagtTCTgaagatatattgaaaagtttagagaTCCGTAG
ATCACGTCACAGTGTATTATTTTAATAAGAAtgctatttaaaaaagaagG
GATAAAATTACAGAGGGGAGGTTGATATAAGGGAAATGAAATAAGCATGG
GGTGTCACACCCCTctgtatgaaaaaaaaaaaacactacatgACTTCTGA
CTTCACCCAGACAATGGCTGTTAACGCCTTAGCATACTTTCAGTATCCTC
TATAAAGACGCCACAATACCCAATATATTAGATGTTTACCGAATAAGTTG
TAGCTTACAGGATTGAGCATTTGTGTTGTTGGGGTTACTCACAAGCAGCC
TCATATTAttctatttgatttgatttgtttgaatggtacattttccttgt
ttttatagTGGTAGTCCTGAGAAGGTATTATACGATGTCAAGTATGAAGA
AAATGGAGATATCCCTGAAATTAATGGTATTTACAAATTACATCAACCGC
GTACAGTACTTTGTATCTTTTGAGCTTGCACAGCTTCTAAATGGCTAGAA
GCTAACCCACGCGTTCATACAATGAGAGACTAAAACTTTTTAAGGGAGTC
TGCACTCTCCACTGTTCTACTGCAATGAAGTGTTATTCTTTTGTGAaatg
tcttttttattttccatcaGAGTCTACTATCGTCTTAAAGATTTTAACTT
CCAACTTCTTTTAGATTATACACCATATACAAGTTTcattaaagtttgaa
attaatcaatatttttttcaaaatttatcttCCAGAGTCTGAGGAATTAG
AAGAGAAAGATTTGATCAAAAGAATGAGGCTTGAATTGAAGAGGGCTGGG
GAAAACagcaagaaaaatgaaaatgagatAGATGAACTTAAACAAACTGT
CCATGTTTTATACAAATCTCTTGAGGAGTCAAAGCAATGGCAATCGACAG
TCTACGCNAACagcaagaaaaatgaaaaggagATAGATGAACTTAAACAA
ACTGTCCATGCTTTATACAAATCTCTAGAGGAGTCAAAGCAATGGCAATC
AACAGTCTACGCACAAATGCAACAAATGACTGAATTCAACAATCAAATGT
CACAGAGATTAAATGAATTGAATGTGGAAATTAAAACACTGAAGCATGAT
AATGATGAATTTAAGCCTAAAGATGCTCCCTCTGAAAGTGTTACTAAAAT
GAAAGAAGCTGTTGTTTATGGAGATTCTACTTCCGCCAAGAAGCTTTCAA
CTCgccgaaaattgacaaaaactcATCAAATCCCAAAAACTGACATTGTT
CAAAAGCCCAATGGTAAATCTTCTAATAAAGAATCTAGTAATATTTGTAA
ACAAAAGCGAACGGATATTGAGAAAATTGTTAAGGAGGAGAAAAAAGAAA
CTGACAACTCTACCGTTTCTGAAAATGGAAAGGTGGAGAAACTAAATACC
GAGAGAGAAAAAGTTGTAGAGCCACCAAATCTGAAAGAGGAAGATGATAC
AACAGAAGAANAACTCTACCATTTCTGAAAATGGGAAGGTGGACAAACTA
AATACCGAGAGAATAAAAATTGTAGAGCCACCAAATCTGAAAGAGGAAGA
TGAGACAACTAAAGAGGGAGGTACTTTGAATATTGAAGAAGAGCTCAGAA
ATGCTGCAGAAGAAGCAATGTCCAAATCTGGATTTGCTTACGATGAAAGT
TCTGGAATGTATTACAACTGGCAAAGTGGAATGTATTATGATCCAAACAG
TCAGCTGTACTATGACCACAAGAATGGTGTATACTATTACTACGATCAAG
AAAAAGAAACGTATATATTTCACTCCCAAATTAAAGTTGCTGAGGAAAAG
ACAGATGAATCTGACTCGAATGATCAGAAAGATGGCCAACTATCAGATGG
TGAAATTCGTTCTGAACCTGTGTCACCTGCAGGTCCTACTCCAGTTATTG
ACCCGTGCATCAGGGCTATGATCGTCAAATCCGAATCAGTTGATGTTGGT
TCTTTATACATAGTGACTTGTCAGGGAGGAAGCATTGGGAAAGACCCCTC
AAATACTATTTGTTTAGCTGATGATGAGCTCGCCAGTCGCTCTCATGCTA
AGATCCtatatgaaaatgaaagcaaaacgttttttatacaagatttgaaa
actcaaaatggCACTTATATCAATGATGAACGAATAGCGGATGCTAGATG
TGAATCTGAACCTATAGAAGTCACACATCGTGATTTTATTCGAATTGGCG
AAACTACAATTTCTTTTCACGTCCATACTGGAAACGAGACGTGTTTTGAT
TGCGAGCCTGGTAATATACAAGCCATTCTAGAAGCAGAAAAAGAGAAGGC
GACTNTTCATACTGGAAACGAGACATGTTTTGATTGCGAGCCCGGTAATA
TACAAGCCATCCTAGAAGCTGAAAAAGAGAAGGCGACCAGGGAAGATTTG
AATAAACAGAGAAAACATGAAGTCAAAAGTATGATGAAAAAATATGGTTT
ATCCAAAGGCTACATACCTAAAAAATTGATCGAATCTGTTCCCGATCGTG
CAGCAAGACGTCGTAAGGAAGTCGGGAGTGATCCTTATGAGAATATTTTG
AGACCAGTCGAAAAAGCATCTGTACATAAAGAAATATCTGATGAGAATAT
CGGACATAAGATGCTGGCTAAAATGGGATGGAAATCTGGCGAAGGGCTTG
GCAAATCACAACAAGGTATTGCAGAGCCAATTGGCGTGCAAGTGCATGGA
AAAAACAAAGGGTTGGGGTTCGGTTCTACTGCACCGATTGATAGCAAGCC
GTCAAGAAAACAAGATATATTGAACAAGACTAAGGAAAGATtcgaaaaga
tttcaaaataatacAATTTCTCATCATATTGATtcagatttttctaaaat
ttttactttaggcTTTCAGTTGTGCTCCCTTTTCGGAAGTATCTCCGTGA
ATTAAAGACAGCAAAG

Coding sequence (CDS) from alignment at scaffold_350:134164..141379+

>TCONS_00060946 ID=TCONS_00060946|Name=TCONS_00060946|organism=Clytia hemisphaerica|type=CDS|length=10095bp|location=Sequence derived from alignment at scaffold_350:134164..141379+ (Clytia hemisphaerica)
ATGACTGATGCAAAAGACAGGGTTTTTCTCAAGGCCAGAAGGAGAAAAAC
ATCAAGTAATGAAAGTGGTAGTCCTGAGAAGGTATTATACGATGTCAAGT
ATGAAGAAAATGGAGATATCCCTGAAATTAATGAGTCTGAGGAATTAGAA
GAGAAAGATTTGATCAAAAGAATGAGGCTTGAATTGAAGAGGGCTGGGGA
AAACagcaagaaaaatgaaaatgagatAGATGAACTTAAACAAACTGTCC
ATGTTTTATACAAATCTCTTGAGGAGTCAAAGCAATGGCAATCGACAGTC
TACGCNAACagcaagaaaaatgaaaaggagATAGATGAACTTAAACAAAC
TGTCCATGCTTTATACAAATCTCTAGAGGAGTCAAAGCAATGGCAATCAA
CAGTCTACGCACAAATGCAACAAATGACTGAATTCAACAATCAAATGTCA
CAGAGATTAAATGAATTGAATGTGGAAATTAAAACACTGAAGCATGATAA
TGATGAATTTAAGCCTAAAGATGCTCCCTCTGAAAGTGTTACTAAAATGA
AAGAAGCTGTTGTTTATGGAGATTCTACTTCCGCCAAGAAGCTTTCAACT
CgccgaaaattgacaaaaactcATCAAATCCCAAAAACTGACATTGTTCA
AAAGCCCAATGGTAAATCTTCTAATAAAGAATCTAGTAATATTTGTAAAC
AAAAGCGAACGGATATTGAGAAAATTGTTAAGGAGGAGAAAAAAGAAACT
GACAACTCTACCGTTTCTGAAAATGGAAAGGTGGACAAACTAAATACCGA
GAGAATAAAAATTGTAGAGCCACCAAATCTGAAAGAGGAAGATGAGACAA
CTAAAGAGGGAGGTACTTTGAATATTGAAGAAGAGCTCAGAAATGCTGCA
GAAGAAGCAATGTCCAAATCTGGATTTGCTTACGATGAAAGTTCTGGAAT
GTATTACAACTGGCAAAGTGGAATGTATTATGATCCAAACAGTCAGCTGT
ACTATGACCACAAGAATGGTGTATACTATTACTACGATCAAGAAAAAGAA
ACGTATATATTTCACTCCCAAATTAAAGTTGCTGAGGAAAAGACAGATGA
ATCTGACTCGAATGATCAGAAAGATGGCCAACTATCAGATGGTGAAATTC
GTTCTGAACCTGTGTCACCTGCAGGTCCTACTCCAGTTATTGACCCGTGC
ATCAGGGCTATGATCGTCAAATCCGAATCAGTTGATGTTGGTTCTTTATA
CATAGTGACTTGTCAGGGAGGAAGCATTGGGAAAGACCCCTCAAATACTA
TTTGTTTAGCTGATGATGAGCTCGCCAGTCGCTCTCATGCTAAGATCCta
tatgaaaatgaaagcaaaacgttttttatacaagatttgaaaactcaaaa
tggCACTTATATCAATGATGAACGAATAGCGGATGCTAGATGTGAATCTG
AACCTATAGAAGTCACACATCGTGATTTTATTCGAATTGGCGAAACTACA
ATTTCTTTTCACGTCCATACTGGAAACGAGACGTGTTTTGATTGCGAGCC
TGGTAATATACAAGCCATTCTAGAAGCAGAAAAAGAGAAGGCGACCAGGG
AAGATTTGAATAAACAGAGAAAACATGAAGTCAAAAGTATGATGAAAAAA
TATGGTTTATCCAAAGGCTACATACCTAAAAAATTGATCGAATCTGTTCC
CGATCGTGCAGCAAGACGTCGTAAGGAAGTCGGGAGTGATCCTTATGAGA
ATATTTTGAGACCAGTCGAAAAAGCATCTGTACATAAAGAAATATCTGAT
GAGAATATCGGACATAAGATGCTGGCTAAAATGGGATGGAAATCTGGCGA
AGGGCTTGGCAAATCACAACAAGGTATTGCAGAGCCAATTGGCGTGCAAG
TGCATGGAAAAAACAAAGGGTTGGGGTTCGGTTCTACTGCACCGATTGAT
AGCAAGCCGTCAAGAAAACAAGATATATTGAACAAGACTAAGGAAAGATt
cgaaaagatttcaaaataaATGACTGATGCAAAAGACAGGGTTTTTCTCA
AGGCCAGAAGGAGAAAAACATCAAGTAATGAAAGTGGTAGTCCTGAGAAG
GTATTATACGATGTCAAGTATGAAGAAAATGGAGATATCCCTGAAATTAA
TGAGTCTGAGGAATTAGAAGAGAAAGATTTGATCAAAAGAATGAGGCTTG
AATTGAAGAGGGCTGGGGAAAACagcaagaaaaatgaaaatgagatAGAT
GAACTTAAACAAACTGTCCATGTTTTATACAAATCTCTTGAGGAGTCAAA
GCAATGGCAATCGACAGTCTACGCNAACagcaagaaaaatgaaaaggagA
TAGATGAACTTAAACAAACTGTCCATGCTTTATACAAATCTCTAGAGGAG
TCAAAGCAATGGCAATCAACAGTCTACGCACAAATGCAACAAATGACTGA
ATTCAACAATCAAATGTCACAGAGATTAAATGAATTGAATGTGGAAATTA
AAACACTGAAGCATGATAATGATGAATTTAAGCCTAAAGATGCTCCCTCT
GAAAGTGTTACTAAAATGAAAGAAGCTGTTGTTTATGGAGATTCTACTTC
CGCCAAGAAGCTTTCAACTCgccgaaaattgacaaaaactcATCAAATCC
CAAAAACTGACATTGTTCAAAAGCCCAATGGTAAATCTTCTAATAAAGAA
TCTAGTAATATTTGTAAACAAAAGCGAACGGATATTGAGAAAATTGTTAA
GGAGGAGAAAAAAGAAACTGACAACTCTACCGTTTCTGAAAATGGAAAGG
TGGACAAACTAAATACCGAGAGAATAAAAATTGTAGAGCCACCAAATCTG
AAAGAGGAAGATGAGACAACTAAAGAGGGAGGTACTTTGAATATTGAAGA
AGAGCTCAGAAATGCTGCAGAAGAAGCAATGTCCAAATCTGGATTTGCTT
ACGATGAAAGTTCTGGAATGTATTACAACTGGCAAAGTGGAATGTATTAT
GATCCAAACAGTCAGCTGTACTATGACCACAAGAATGGTGTATACTATTA
CTACGATCAAGAAAAAGAAACGTATATATTTCACTCCCAAATTAAAGTTG
CTGAGGAAAAGACAGATGAATCTGACTCGAATGATCAGAAAGATGGCCAA
CTATCAGATGGTGAAATTCGTTCTGAACCTGTGTCACCTGCAGGTCCTAC
TCCAGTTATTGACCCGTGCATCAGGGCTATGATCGTCAAATCCGAATCAG
TTGATGTTGGTTCTTTATACATAGTGACTTGTCAGGGAGGAAGCATTGGG
AAAGACCCCTCAAATACTATTTGTTTAGCTGATGATGAGCTCGCCAGTCG
CTCTCATGCTAAGATCCtatatgaaaatgaaagcaaaacgttttttatac
aagatttgaaaactcaaaatggCACTTATATCAATGATGAACGAATAGCG
GATGCTAGATGTGAATCTGAACCTATAGAAGTCACACATCGTGATTTTAT
TCGAATTGGCGAAACTACAATTTCTTTTCACGTCCATACTGGAAACGAGA
CGTGTTTTGATTGCGAGCCTGGTAATATACAAGCCATTCTAGAAGCAGAA
AAAGAGAAGGCGACCAGGGAAGATTTGAATAAACAGAGAAAACATGAAGT
CAAAAGTATGATGAAAAAATATGGTTTATCCAAAGGCTACATACCTAAAA
AATTGATCGAATCTGTTCCCGATCGTGCAGCAAGACGTCGTAAGGAAGTC
GGGAGTGATCCTTATGAGAATATTTTGAGACCAGTCGAAAAAGCATCTGT
ACATAAAGAAATATCTGATGAGAATATCGGACATAAGATGCTGGCTAAAA
TGGGATGGAAATCTGGCGAAGGGCTTGGCAAATCACAACAAGGTATTGCA
GAGCCAATTGGCGTGCAAGTGCATGGAAAAAACAAAGGGTTGGGGTTCGG
TTCTACTGCACCGATTGATAGCAAGCCGTCAAGAAAACAAGATATATTGA
ACAAGACTAAGGAAAGATtcgaaaagatttcaaaataaATGACTGATGCA
AAAGACAGGGTTTTTCTCAAGGCCAGAAGGAGAAAAACATCAAGTAATGA
AAGTGGTAGTCCTGAGAAGGTATTATACGATGTCAAGTATGAAGAAAATG
GAGATATCCCTGAAATTAATGAGTCTGAGGAATTAGAAGAGAAAGATTTG
ATCAAAAGAATGAGGCTTGAATTGAAGAGGGCTGGGGAAAACagcaagaa
aaatgaaaatgagatAGATGAACTTAAACAAACTGTCCATGTTTTATACA
AATCTCTTGAGGAGTCAAAGCAATGGCAATCGACAGTCTACGCNAACagc
aagaaaaatgaaaaggagATAGATGAACTTAAACAAACTGTCCATGCTTT
ATACAAATCTCTAGAGGAGTCAAAGCAATGGCAATCAACAGTCTACGCAC
AAATGCAACAAATGACTGAATTCAACAATCAAATGTCACAGAGATTAAAT
GAATTGAATGTGGAAATTAAAACACTGAAGCATGATAATGATGAATTTAA
GCCTAAAGATGCTCCCTCTGAAAGTGTTACTAAAATGAAAGAAGCTGTTG
TTTATGGAGATTCTACTTCCGCCAAGAAGCTTTCAACTCgccgaaaattg
acaaaaactcATCAAATCCCAAAAACTGACATTGTTCAAAAGCCCAATGG
TAAATCTTCTAATAAAGAATCTAGTAATATTTGTAAACAAAAGCGAACGG
ATATTGAGAAAATTGTTAAGGAGGAGAAAAAAGAAACTGACAACTCTACC
GTTTCTGAAAATGGAAAGGTGGACAAACTAAATACCGAGAGAATAAAAAT
TGTAGAGCCACCAAATCTGAAAGAGGAAGATGAGACAACTAAAGAGGGAG
GTACTTTGAATATTGAAGAAGAGCTCAGAAATGCTGCAGAAGAAGCAATG
TCCAAATCTGGATTTGCTTACGATGAAAGTTCTGGAATGTATTACAACTG
GCAAAGTGGAATGTATTATGATCCAAACAGTCAGCTGTACTATGACCACA
AGAATGGTGTATACTATTACTACGATCAAGAAAAAGAAACGTATATATTT
CACTCCCAAATTAAAGTTGCTGAGGAAAAGACAGATGAATCTGACTCGAA
TGATCAGAAAGATGGCCAACTATCAGATGGTGAAATTCGTTCTGAACCTG
TGTCACCTGCAGGTCCTACTCCAGTTATTGACCCGTGCATCAGGGCTATG
ATCGTCAAATCCGAATCAGTTGATGTTGGTTCTTTATACATAGTGACTTG
TCAGGGAGGAAGCATTGGGAAAGACCCCTCAAATACTATTTGTTTAGCTG
ATGATGAGCTCGCCAGTCGCTCTCATGCTAAGATCCtatatgaaaatgaa
agcaaaacgttttttatacaagatttgaaaactcaaaatggCACTTATAT
CAATGATGAACGAATAGCGGATGCTAGATGTGAATCTGAACCTATAGAAG
TCACACATCGTGATTTTATTCGAATTGGCGAAACTACAATTTCTTTTCAC
GTCCATACTGGAAACGAGACGTGTTTTGATTGCGAGCCTGGTAATATACA
AGCCATTCTAGAAGCAGAAAAAGAGAAGGCGACCAGGGAAGATTTGAATA
AACAGAGAAAACATGAAGTCAAAAGTATGATGAAAAAATATGGTTTATCC
AAAGGCTACATACCTAAAAAATTGATCGAATCTGTTCCCGATCGTGCAGC
AAGACGTCGTAAGGAAGTCGGGAGTGATCCTTATGAGAATATTTTGAGAC
CAGTCGAAAAAGCATCTGTACATAAAGAAATATCTGATGAGAATATCGGA
CATAAGATGCTGGCTAAAATGGGATGGAAATCTGGCGAAGGGCTTGGCAA
ATCACAACAAGGTATTGCAGAGCCAATTGGCGTGCAAGTGCATGGAAAAA
ACAAAGGGTTGGGGTTCGGTTCTACTGCACCGATTGATAGCAAGCCGTCA
AGAAAACAAGATATATTGAACAAGACTAAGGAAAGATtcgaaaagatttc
aaaataaATGACTGATGCAAAAGACAGGGTTTTTCTCAAGGCCAGAAGGA
GAAAAACATCAAGTAATGAAAGTGGTAGTCCTGAGAAGGTATTATACGAT
GTCAAGTATGAAGAAAATGGAGATATCCCTGAAATTAATGAGTCTGAGGA
ATTAGAAGAGAAAGATTTGATCAAAAGAATGAGGCTTGAATTGAAGAGGG
CTGGGGAAAACagcaagaaaaatgaaaatgagatAGATGAACTTAAACAA
ACTGTCCATGTTTTATACAAATCTCTTGAGGAGTCAAAGCAATGGCAATC
GACAGTCTACGCNAACagcaagaaaaatgaaaaggagATAGATGAACTTA
AACAAACTGTCCATGCTTTATACAAATCTCTAGAGGAGTCAAAGCAATGG
CAATCAACAGTCTACGCACAAATGCAACAAATGACTGAATTCAACAATCA
AATGTCACAGAGATTAAATGAATTGAATGTGGAAATTAAAACACTGAAGC
ATGATAATGATGAATTTAAGCCTAAAGATGCTCCCTCTGAAAGTGTTACT
AAAATGAAAGAAGCTGTTGTTTATGGAGATTCTACTTCCGCCAAGAAGCT
TTCAACTCgccgaaaattgacaaaaactcATCAAATCCCAAAAACTGACA
TTGTTCAAAAGCCCAATGGTAAATCTTCTAATAAAGAATCTAGTAATATT
TGTAAACAAAAGCGAACGGATATTGAGAAAATTGTTAAGGAGGAGAAAAA
AGAAACTGACAACTCTACCGTTTCTGAAAATGGAAAGGTGGACAAACTAA
ATACCGAGAGAATAAAAATTGTAGAGCCACCAAATCTGAAAGAGGAAGAT
GAGACAACTAAAGAGGGAGGTACTTTGAATATTGAAGAAGAGCTCAGAAA
TGCTGCAGAAGAAGCAATGTCCAAATCTGGATTTGCTTACGATGAAAGTT
CTGGAATGTATTACAACTGGCAAAGTGGAATGTATTATGATCCAAACAGT
CAGCTGTACTATGACCACAAGAATGGTGTATACTATTACTACGATCAAGA
AAAAGAAACGTATATATTTCACTCCCAAATTAAAGTTGCTGAGGAAAAGA
CAGATGAATCTGACTCGAATGATCAGAAAGATGGCCAACTATCAGATGGT
GAAATTCGTTCTGAACCTGTGTCACCTGCAGGTCCTACTCCAGTTATTGA
CCCGTGCATCAGGGCTATGATCGTCAAATCCGAATCAGTTGATGTTGGTT
CTTTATACATAGTGACTTGTCAGGGAGGAAGCATTGGGAAAGACCCCTCA
AATACTATTTGTTTAGCTGATGATGAGCTCGCCAGTCGCTCTCATGCTAA
GATCCtatatgaaaatgaaagcaaaacgttttttatacaagatttgaaaa
ctcaaaatggCACTTATATCAATGATGAACGAATAGCGGATGCTAGATGT
GAATCTGAACCTATAGAAGTCACACATCGTGATTTTATTCGAATTGGCGA
AACTACAATTTCTTTTCACGTCCATACTGGAAACGAGACGTGTTTTGATT
GCGAGCCTGGTAATATACAAGCCATTCTAGAAGCAGAAAAAGAGAAGGCG
ACCAGGGAAGATTTGAATAAACAGAGAAAACATGAAGTCAAAAGTATGAT
GAAAAAATATGGTTTATCCAAAGGCTACATACCTAAAAAATTGATCGAAT
CTGTTCCCGATCGTGCAGCAAGACGTCGTAAGGAAGTCGGGAGTGATCCT
TATGAGAATATTTTGAGACCAGTCGAAAAAGCATCTGTACATAAAGAAAT
ATCTGATGAGAATATCGGACATAAGATGCTGGCTAAAATGGGATGGAAAT
CTGGCGAAGGGCTTGGCAAATCACAACAAGGTATTGCAGAGCCAATTGGC
GTGCAAGTGCATGGAAAAAACAAAGGGTTGGGGTTCGGTTCTACTGCACC
GATTGATAGCAAGCCGTCAAGAAAACAAGATATATTGAACAAGACTAAGG
AAAGATtcgaaaagatttcaaaataaATGACTGATGCAAAAGACAGGGTT
TTTCTCAAGGCCAGAAGGAGAAAAACATCAAGTAATGAAAGTGGTAGTCC
TGAGAAGGTATTATACGATGTCAAGTATGAAGAAAATGGAGATATCCCTG
AAATTAATGAGTCTGAGGAATTAGAAGAGAAAGATTTGATCAAAAGAATG
AGGCTTGAATTGAAGAGGGCTGGGGAAAACagcaagaaaaatgaaaatga
gatAGATGAACTTAAACAAACTGTCCATGTTTTATACAAATCTCTTGAGG
AGTCAAAGCAATGGCAATCGACAGTCTACGCNAACagcaagaaaaatgaa
aaggagATAGATGAACTTAAACAAACTGTCCATGCTTTATACAAATCTCT
AGAGGAGTCAAAGCAATGGCAATCAACAGTCTACGCACAAATGCAACAAA
TGACTGAATTCAACAATCAAATGTCACAGAGATTAAATGAATTGAATGTG
GAAATTAAAACACTGAAGCATGATAATGATGAATTTAAGCCTAAAGATGC
TCCCTCTGAAAGTGTTACTAAAATGAAAGAAGCTGTTGTTTATGGAGATT
CTACTTCCGCCAAGAAGCTTTCAACTCgccgaaaattgacaaaaactcAT
CAAATCCCAAAAACTGACATTGTTCAAAAGCCCAATGGTAAATCTTCTAA
TAAAGAATCTAGTAATATTTGTAAACAAAAGCGAACGGATATTGAGAAAA
TTGTTAAGGAGGAGAAAAAAGAAACTGACAACTCTACCGTTTCTGAAAAT
GGAAAGGTGGACAAACTAAATACCGAGAGAATAAAAATTGTAGAGCCACC
AAATCTGAAAGAGGAAGATGAGACAACTAAAGAGGGAGGTACTTTGAATA
TTGAAGAAGAGCTCAGAAATGCTGCAGAAGAAGCAATGTCCAAATCTGGA
TTTGCTTACGATGAAAGTTCTGGAATGTATTACAACTGGCAAAGTGGAAT
GTATTATGATCCAAACAGTCAGCTGTACTATGACCACAAGAATGGTGTAT
ACTATTACTACGATCAAGAAAAAGAAACGTATATATTTCACTCCCAAATT
AAAGTTGCTGAGGAAAAGACAGATGAATCTGACTCGAATGATCAGAAAGA
TGGCCAACTATCAGATGGTGAAATTCGTTCTGAACCTGTGTCACCTGCAG
GTCCTACTCCAGTTATTGACCCGTGCATCAGGGCTATGATCGTCAAATCC
GAATCAGTTGATGTTGGTTCTTTATACATAGTGACTTGTCAGGGAGGAAG
CATTGGGAAAGACCCCTCAAATACTATTTGTTTAGCTGATGATGAGCTCG
CCAGTCGCTCTCATGCTAAGATCCtatatgaaaatgaaagcaaaacgttt
tttatacaagatttgaaaactcaaaatggCACTTATATCAATGATGAACG
AATAGCGGATGCTAGATGTGAATCTGAACCTATAGAAGTCACACATCGTG
ATTTTATTCGAATTGGCGAAACTACAATTTCTTTTCACGTCCATACTGGA
AACGAGACGTGTTTTGATTGCGAGCCTGGTAATATACAAGCCATTCTAGA
AGCAGAAAAAGAGAAGGCGACCAGGGAAGATTTGAATAAACAGAGAAAAC
ATGAAGTCAAAAGTATGATGAAAAAATATGGTTTATCCAAAGGCTACATA
CCTAAAAAATTGATCGAATCTGTTCCCGATCGTGCAGCAAGACGTCGTAA
GGAAGTCGGGAGTGATCCTTATGAGAATATTTTGAGACCAGTCGAAAAAG
CATCTGTACATAAAGAAATATCTGATGAGAATATCGGACATAAGATGCTG
GCTAAAATGGGATGGAAATCTGGCGAAGGGCTTGGCAAATCACAACAAGG
TATTGCAGAGCCAATTGGCGTGCAAGTGCATGGAAAAAACAAAGGGTTGG
GGTTCGGTTCTACTGCACCGATTGATAGCAAGCCGTCAAGAAAACAAGAT
ATATTGAACAAGACTAAGGAAAGATtcgaaaagatttcaaaataa

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_038258	XLOC_038258	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00060946-protein	TCONS_00060946-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_350	supercontig	scaffold_350:134164..141379 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.58434	2.07343	0	0.301458	4.63942	3.66947	4.64066	4.80435	2.33874	3.34085	1.77308	1.24069	2.23873	2.68734	3.23897	3.05379	4.82628	4.62367	2.24902	1.66745	2.26538	2.61567	5.21793	5.38302	2.74352	3.53876	5.10497	2.56378	5.38095	5.77939

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR000467	G_patch_dom
IPR000253	FHA_dom
IPR008984	SMAD_FHA_domain

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0005515	protein binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0005515	protein binding

Blast

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BLAST of TCONS_00060946 vs. Swiss-Prot (Human)
Match: AGGF1 (Angiogenic factor with G patch and FHA domains 1 OS=Homo sapiens GN=AGGF1 PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 5.176e-37
Identity = 110/327 (33.64%), Postives = 180/327 (55.05%), Query Frame = 3

Query: 1209 EKTDESDSNDQKDGQLSDGEIRSEPVSPAGPTPVIDPCIRAMIVKSESVDVGSLYIVTC-QGGSIGKDPSNTICLADDELA-SRSHAKILYENESKTFFIQDLKTQNGTYINDERIADARCESEPIEVTHRDFIRIGETTISFHVHTGNETCFDCEPGNIQAILEAEKE-------KATREDLNKQRKHEVKSMMKKYGLSKG-YIPKKLIES--VPDRAARRRKEVGSDPYENILRPVEKASVHKEISDENIGHKMLAKMGWKSGEGLGKSQQGIAEPIGVQVHGKNKGLGFGSTAPIDSKPSRKQDI----------LNKTKERF 2123
            E TD    +   +   S+G + +E         +  PCIR ++++S  + +GSL+I+T     +IG++      L   E+  S+ HA+I ++++ +++ + D  +QNGT +N ++I   + + +P  + H D ++IGET +SFH+H G++TC  CEPG ++A L  +K+         ++E+   +R+ E+K +  KYGL    Y  +K +++    DRA +RR++VGS+      R    ASVH EI+D N G KML KMGWK GEGLGK   G+  PI +Q+   + GLG G       KPS  +D+           +K +ERF
Sbjct:  372 EITDSQTEDSYDEAITSEGNVTAEDSEDEDEDKIWPPCIRVIVIRSPVLQIGSLFIITAVNPATIGREKDMEHTLRIPEVGVSKFHAEIYFDHDLQSYVLVDQGSQNGTIVNGKQILQPKTKCDPYVLEHGDEVKIGETVLSFHIHPGSDTCDGCEPGQVRAHLRLDKKDESFVGPTLSKEEKELERRKELKKIRVKYGLQNTEYEDEKTLKNPKYKDRAGKRREQVGSEG--TFQRDDAPASVHSEITDSNKGRKMLEKMGWKKGEGLGKDGGGMKTPIQLQLRRTHAGLGTG-------KPSSFEDVHLLQNKNKKNWDKARERF 689

HSP 2 Score: 83.1889 bits (204), Expect = 2.479e-16
Identity = 34/70 (48.57%), Postives = 51/70 (72.86%), Query Frame = 3

Query:  993 NIEEELRNAAEEAMSKSGFAYDESSGMYYNWQSGMYYDPNSQLYYDHKNGVYYYYDQEKETYIFHSQIKV 1202
            ++ E LR AAE A+S++GF+YDE++G+Y++  +G YYD  +QLYYD   G+YYY D E   Y FHS++ +
Sbjct:  189 SLAESLRAAAEAAVSQTGFSYDENTGLYFDHSTGFYYDSENQLYYDPSTGIYYYCDVESGRYQFHSRVDL 258

The following BLAST results are available for this feature:

BLAST of TCONS_00060946 vs. Swiss-Prot (Human)

BLAST of TCONS_00060946 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
AGGF1	5.176e-37	33.64	Angiogenic factor with G patch and FHA domains 1 O...	[more]

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TCONS_00060946 (transcript) - C. hemisphaerica