TCONS_00060951 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060951
Unique NameTCONS_00060951
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1111

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060951 ID=TCONS_00060951|Name=TCONS_00060951|organism=Clytia hemisphaerica|type=transcript|length=1111bp
aggCTAGGAAAAGAGTAtaaaagaaacaagaaaaatctggAGAAATGGTA
TCTTTCATTTGTGACGCATGTGGGAACACTGTTAAGAAGAATCAAGTTGA
AAAACATTACCAAACAGCGTGTAGAAACTGCTCTGTTCTATCATGTATTG
ATTGTGGGGTTGATTTCCCTGGCGATGCATATGCCTCTCACACAAGTTGC
ATATCTGAAGCTGAAAAGTACCAAGGACATCTCTATCAACCGAAAGATAA
GGAAAACAAAGGGgaagcaaaacaaaaacaatggaCACAGCAACTACAGG
GTGCATCCAGTAATGTTAAAGATCCAAAGCTACGATCACTCCTTGAAAAG
TTGTCAGAATATTCAAATATCCCAcgaaaaaggaaaaagtttGAAaattt
ttgcaaaaacagTGTCAAGGTATACGATACAAAAACACTTGATGCACTTT
GGGATGCATTTAATGAAGGCTCAAACACAAAAACGCCTACAACGAACGGT
AATACACAAAATGGACATAACAATACAACAGATGTTAACACGAATGGTAC
AACgaacaacaacaaggatgatagtgaagatgaaaataaagtcacagaat
caaagaaaaagaaaaagaagaggaaGCTTGAAGAAGATGAGGAGAAAGac
caagataaacaaaaaaataagaaaaagaaaaagaagatagCTGACCAAGA
AGAAATAGACGGGTTGATTTTGTTTTCAGAAGAGGTGCAAGGagaagaaa
aagatgaaaatgataaCCAACATAAAGGGAAATTCCACTGGCATAAGGCA
ATCAAAACGGCGTTGAAAGAATCAGATGATCACGAACTTCCTTTGAAAAA
GCTCCGAAAAAAGGTAATAGCGGCATACGAAGCACATGGCACGGACCATC
GAGCGAGCGATCTACAGCAGTGTCGAACATTGTTCGAAAAGAAATTGAAC
ACTTATCCAAAAGCTAAAATTATCAAAGATAAATATGTGAAATTATGTAC
ATGATAATACAACAAAATGAATACTTTTTATAACAATTAAATCAAATGAT
ACCCTTAATGTTGTTCCTGCAGGTTGGCCCTGGATTTTAGTTGTTGAACA
GAAAAATGATA
Run BLAST on NCBI

protein sequence of TCONS_00060951-protein

>TCONS_00060951-protein ID=TCONS_00060951-protein|Name=TCONS_00060951-protein|organism=Clytia hemisphaerica|type=polypeptide|length=319bp
MVSFICDACGNTVKKNQVEKHYQTACRNCSVLSCIDCGVDFPGDAYASHT
SCISEAEKYQGHLYQPKDKENKGEAKQKQWTQQLQGASSNVKDPKLRSLL
EKLSEYSNIPRKRKKFENFCKNSVKVYDTKTLDALWDAFNEGSNTKTPTT
NGNTQNGHNNTTDVNTNGTTNNNKDDSEDENKVTESKKKKKKRKLEEDEE
KDQDKQKNKKKKKKIADQEEIDGLILFSEEVQGEEKDENDNQHKGKFHWH
KAIKTALKESDDHELPLKKLRKKVIAAYEAHGTDHRASDLQQCRTLFEKK
LNTYPKAKIIKDKYVKLCT
Run BLAST on NCBI

transcript from alignment at scaffold_350:165450..170554+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060951 ID=TCONS_00060951|Name=TCONS_00060951|organism=Clytia hemisphaerica|type=transcript|length=5105bp|location=Sequence derived from alignment at scaffold_350:165450..170554+ (Clytia hemisphaerica)
aggCTAGGAAAAGAGTAtaaaagaaacaagaaaaatctggAGAAATGGTA
TCTTTCATTTGTGACGCATGTGGGAACACTGTTAAGAAGAATCAAGTTGA
AAAACATTACCAAACAGCGTGTAGAAACTGCTCTGTTCTATCATGTATTG
ATTGTGGGGTTGATTTCCCTGGCGATGCATATGCCTCTCACACAAGTTGC
ATATCTGAAGCTGAAAAGTACCAAGGACATCTCTATCAACCGAAAGATAA
GGAAAACAAAGGGgaagcaaaacaaaaacaatggaCACAGGTTTGTAAGA
TAATTACACACTAGCTGTTAATCATTTGCCACAAGAATTTGTCAGAACTC
AATGCTGTCAGGCTGCTTGTCTCGCAGGTACAAATATCATTTAGAGATGT
TTTTTAATCAAGCAAATTTTCTGAATAATCTCTTCTTTATTGTATTCCAG
CAACTACAGGGTGCATCCAGTAATGTTAAAGATCCAAAGCTACGATCACT
CCTTGAAAAGTTGTCAGAATATTCAAATATCCCAcgaaaaaggaaaaagt
ttGAAGTAAGCCAGCCTCTTAAAATTTATAAATAGTAGAATTTAGTATAT
tagaagaaacttttgatctaaatTATTATAAGAACCGGTTATTAGGCCCA
TTATATGAAGCATATCGAGTTTAAAGTGTGGAAGGGCCTTGAGTTGAAAC
TTTTGAATGGGGAAATgtagccacttatttcccatctaaaacATGTGACC
TGTCTGGTTTTCACACAATCACCAGATTTCCAGGTTATTTAGAATTATCA
ATATAAACTTAATACACTATAGGTTAGTTTTTTGTGTCTCCGTCTAAATC
GAGTTTCCTTTACTTATTATTAAATGAAgcactttcaaagtttttttctc
tcatagaatttttgcaaaaacagTGTCAAGGTATACGATACAAAAACACT
TGATGCACTTTGGGATGCATTTAATGAAGGCTCAAACACAAAAACGGTAT
GTAATTATATTAGATTTTAAGGTTGAGAACTCACTAAGTTTACTCAttgc
gtattttttttaaatttcaatcaaGCTTTACTTTGGAGAACTGTGTATGT
AATTTCTGATCAAcgatttgaaaatatgataaagaAGATATAAAGGAGTA
TCACCTGAATGTAGCAAATTATGTTACGAATCCACTGAAAGACTGAAAAA
CTTAAtaaactgaaatttcattttccgCAACAGCCTACAACGAACGGTAA
TACACAAAATGGACATAACAATACAACAGATGTTAACACGAATGGTACAA
Cgaacaacaacaaggatgatagtgaagatgaaaataaagtcacagaatca
aagaaaaagaaaaagaagaggaaGCTTGAAGAAGATGAGGAGAAAGacca
agataaacaaaaaaataagaaaaagaaaaagaagatagCTGACCAAGAAG
AAATAGGTATTTATTGTCAAATATGCTTAAGTTTGAATTTCCTGCAGCct
aaatttatttgtttttaaatgacgTTGAGATGACGATACCCATCCTATTG
TAATGTTTTCCCTTTTCTCAGACGGGTTGATTTTGTTTTCAGAAGAGGTG
CAAGGagaagaaaaagatgaaaatgataaCCAACATAAAGGTACTTTTTT
CAttaggaaatatttttgagGCTCTCTGCTCCAAATCTCCAAGAAATAGA
TGTCCCATTTGATGTGTTTGACCTTGTTACACTTGTTTACACCATTATCA
TTAACATAGTATCCATTATTACAGATTATTATCATCTAAAAATTATCCAT
TATCTTGTAAGCATTTTCAGGGCAGGGCCCGTAGgttaaaaaaaaccttg
aaatggcattttttgtaaGTAGTCGAAAAGAGACATAATTCGAGGCAAAA
TCTTGTAAATTTCTCAAGGGAACTtgcttttataatttttaaatcttttt
tagcctaatatttatttttttttgagttgaaaaattactttcactccttt
ataaaaattatattgtttttcGTCAGGAAACACGTGCCTAAATTCCGTTG
CAGAGGAAGGGTAGATTTTGCCGACTGAAAAGCCAGTAATCTAAAGAGAA
CTGATGTGACCCCCTTGCTTTCAAATAGGAagaaatctatatattaatag
cggtgctttgtgtgtctgtgtgtcaccactttcgttttcgctttgtttgt
gttttaaaattatgacttttagtctcttgctccacaagtttgttctattg
gattcgcgccatttgcaaaagatcggatagagcttggtttagactttatt
cagcctttgttttgaaaaggccGATCTacattttagtaattttaatttct
gcccagagttgtctttttctctcttcttttgttttaaatgttttcgaatg
tatttaacgatcgtatttattaatgacattcgtattcttttcaaagcaaa
acaatttcatttcaaagaaaagaatatttcaaaagtaaatcagaacataa
aaatcaaaatgtttgtggacaacaacagcattcaaaggatATAATCGATA
TAATgatataaagcataagaaaaaattagttcacttctttcttcttataa
aaatattcaagtcgtcGTTATGTTAAAAAGTGtatacgtcattttttatg
tttaaattcgaaaagttatgccaagggtttaaaaaagaaacttagaattg
tcttatttctttcgatctgataaaaaacaaagagttgcactattctttgt
gaccttcccactttttcctgaaaaattgtcatttaaactggCATATTTAA
Cgcaagcgaagcgagaaaaataactacctgcagagtcgttttaaacgaca
ctggtacagtaaacgatgctctttttgataacttttgactaaaaaattaT
ATCACGGGGGGACAGTacacgatccaaatatggttaaaagataagacagC
CGGGGTaggttagagttaaacgttgtagagatttctttttttttgtttga
tcgcttttggacctaccccggtggaggtcctataaattaacctttgtccg
tctgtccgtccgttagttaccagcttttctcgagattggctcattagttt
tttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcaa
tgcccaaaatgtgacggagcccgattttcgaaaaaaaattttttggggca
aatttgggccaaaaaacggctaaaaaacgggttttttgaactttgtgaag
aattggatcattaattttttctgattttttgcacgaaagtagggtaccat
cataggtataagatggttcaagcagatttttgcaaaaaaattttgttggc
tcaaaaaccgcatgtttatctataagaatcactattaataagcatacatc
aatgttcttagtcaaattactcaatttttttatgagataattgttttttc
tgctcaagagggcttacttttgaagaatatgtgtgtttagacaggaaatt
tgggttgcttggcgtgtttttatagaaaaactggccaaattNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNtagaaaaactggccaaattcgatattttt
ttataagcacattatcaattacttaggtattggcttttctcgagattggc
tctttcattctttatgattttttacacgaagatgcataactataaaccct
tgaatgtgacagaacccgattttcgaaaaaaaatgtttctgggtaaattt
aggccaaaaaacggttaaaaaagaaggttttttggacttcgtgaaaaatt
ggatcattaattttttctaattttttgcataaaagtagggtaccatcata
ggtaaaagatggcttaagcagatttttNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNcactattaataagcatacatcaatgttcttagcca
aattactcaattttttggagatgtttttttgctcacgaagtcttgaatat
gaaagaacatttcaatagcatgaaattttggtttctaaagGTTTTTTATA
AGAAACAAACGACTAATTTTAATAGATCGTCACTatttgtgttctgaatg
attgtttaatggtcacgtcacgtagatatcaattataaacgtgttaaatg
cataatccaggtaggtccatcaaagtatcacttgtttaagCCAGCTTTAA
CATCCAAAgaacttttagtgcgttcagctacagcttaaccggcgtgcgac
gccgggtaccggctagtaaaATATAATTAGGGTTGTATTGAAAGCACGAT
CTACTGTATTCTACCTGACAGGGAAATTCCACTGGCATAAGGCAATCAAA
ACGGCGTTGAAAGAATCAGATGATCACGAACTTCCTTTGAAAAAGCTCCG
AAAAAAGgtaatttcttgtttttatatCCAGAGAAAAATTTCTCAGAACT
CTTAGAATAGGTTGTTATTCAACTTTCTTTCTCTTAAAGTAATTAGCTCA
TTTTGAATCAAATTAAGTCATTCTGAAGTATTTCAGAAGAGCAAATAATT
TATATTCCTAGCAAATTCTTGGATTGGTATGAATTAAATCGTGATAATAT
TTTTCAGGTAATAGCGGCATACGAAGCACATGGCACGGACCATCGAGCGA
GCGATCTACAGCAGTGTCGAACATTGTTCGAAAAGAAATTGAACACTTAT
CCAAAAGCTAAAATTATCAAAGATAAATATGTGAAATTATGTACATGATA
ATACAACAAAATGAATACTTTTTATAACAATTAAATCAAATGATACCCTT
AATGTTGTTCCTGCAGGTTGGCCCTGGATTTTAGTTGTTGAACAGAAAAA
TGATA

Coding sequence (CDS) from alignment at scaffold_350:165450..170554+

>TCONS_00060951 ID=TCONS_00060951|Name=TCONS_00060951|organism=Clytia hemisphaerica|type=CDS|length=6720bp|location=Sequence derived from alignment at scaffold_350:165450..170554+ (Clytia hemisphaerica)
ATGGTATCTTTCATTTGTGACGCATGTGGGAACACTGTTAAGAAGAATCA
AGTTGAAAAACATTACCAAACAGCGTGTAGAAACTGCTCTGTTCTATCAT
GTATTGATTGTGGGGTTGATTTCCCTGGCGATGCATATGCCTCTCACACA
AGTTGCATATCTGAAGCTGAAAAGTACCAAGGACATCTCTATCAACCGAA
AGATAAGGAAAACAAAGGGgaagcaaaacaaaaacaatggaCACAGCAAC
TACAGGGTGCATCCAGTAATGTTAAAGATCCAAAGCTACGATCACTCCTT
GAAAAGTTGTCAGAATATTCAAATATCCCAcgaaaaaggaaaaagtttGA
AaatttttgcaaaaacagTGTCAAGGTATACGATACAAAAACACTTGATG
CACTTTGGGATGCATTTAATGAAGGCTCAAACACAAAAACGCCTACAACG
AACGGTAATACACAAAATGGACATAACAATACAACAGATGTTAACACGAA
TGGTACAACgaacaacaacaaggatgatagtgaagatgaaaataaagtca
cagaatcaaagaaaaagaaaaagaagaggaaGCTTGAAGAAGATGAGGAG
AAAGaccaagataaacaaaaaaataagaaaaagaaaaagaagatagCTGA
CCAAGAAGAAATAGACGGGTTGATTTTGTTTTCAGAAGAGGTGCAAGGag
aagaaaaagatgaaaatgataaCCAACATAAAGGGAAATTCCACTGGCAT
AAGGCAATCAAAACGGCGTTGAAAGAATCAGATGATCACGAACTTCCTTT
GAAAAAGCTCCGAAAAAAGGTAATAGCGGCATACGAAGCACATGGCACGG
ACCATCGAGCGAGCGATCTACAGCAGTGTCGAACATTGTTCGAAAAGAAA
TTGAACACTTATCCAAAAGCTAAAATTATCAAAGATAAATATGTGAAATT
ATGTACATGAATGGTATCTTTCATTTGTGACGCATGTGGGAACACTGTTA
AGAAGAATCAAGTTGAAAAACATTACCAAACAGCGTGTAGAAACTGCTCT
GTTCTATCATGTATTGATTGTGGGGTTGATTTCCCTGGCGATGCATATGC
CTCTCACACAAGTTGCATATCTGAAGCTGAAAAGTACCAAGGACATCTCT
ATCAACCGAAAGATAAGGAAAACAAAGGGgaagcaaaacaaaaacaatgg
aCACAGCAACTACAGGGTGCATCCAGTAATGTTAAAGATCCAAAGCTACG
ATCACTCCTTGAAAAGTTGTCAGAATATTCAAATATCCCAcgaaaaagga
aaaagtttGAAaatttttgcaaaaacagTGTCAAGGTATACGATACAAAA
ACACTTGATGCACTTTGGGATGCATTTAATGAAGGCTCAAACACAAAAAC
GCCTACAACGAACGGTAATACACAAAATGGACATAACAATACAACAGATG
TTAACACGAATGGTACAACgaacaacaacaaggatgatagtgaagatgaa
aataaagtcacagaatcaaagaaaaagaaaaagaagaggaaGCTTGAAGA
AGATGAGGAGAAAGaccaagataaacaaaaaaataagaaaaagaaaaaga
agatagCTGACCAAGAAGAAATAGACGGGTTGATTTTGTTTTCAGAAGAG
GTGCAAGGagaagaaaaagatgaaaatgataaCCAACATAAAGGGAAATT
CCACTGGCATAAGGCAATCAAAACGGCGTTGAAAGAATCAGATGATCACG
AACTTCCTTTGAAAAAGCTCCGAAAAAAGGTAATAGCGGCATACGAAGCA
CATGGCACGGACCATCGAGCGAGCGATCTACAGCAGTGTCGAACATTGTT
CGAAAAGAAATTGAACACTTATCCAAAAGCTAAAATTATCAAAGATAAAT
ATGTGAAATTATGTACATGAATGGTATCTTTCATTTGTGACGCATGTGGG
AACACTGTTAAGAAGAATCAAGTTGAAAAACATTACCAAACAGCGTGTAG
AAACTGCTCTGTTCTATCATGTATTGATTGTGGGGTTGATTTCCCTGGCG
ATGCATATGCCTCTCACACAAGTTGCATATCTGAAGCTGAAAAGTACCAA
GGACATCTCTATCAACCGAAAGATAAGGAAAACAAAGGGgaagcaaaaca
aaaacaatggaCACAGCAACTACAGGGTGCATCCAGTAATGTTAAAGATC
CAAAGCTACGATCACTCCTTGAAAAGTTGTCAGAATATTCAAATATCCCA
cgaaaaaggaaaaagtttGAAaatttttgcaaaaacagTGTCAAGGTATA
CGATACAAAAACACTTGATGCACTTTGGGATGCATTTAATGAAGGCTCAA
ACACAAAAACGCCTACAACGAACGGTAATACACAAAATGGACATAACAAT
ACAACAGATGTTAACACGAATGGTACAACgaacaacaacaaggatgatag
tgaagatgaaaataaagtcacagaatcaaagaaaaagaaaaagaagagga
aGCTTGAAGAAGATGAGGAGAAAGaccaagataaacaaaaaaataagaaa
aagaaaaagaagatagCTGACCAAGAAGAAATAGACGGGTTGATTTTGTT
TTCAGAAGAGGTGCAAGGagaagaaaaagatgaaaatgataaCCAACATA
AAGGGAAATTCCACTGGCATAAGGCAATCAAAACGGCGTTGAAAGAATCA
GATGATCACGAACTTCCTTTGAAAAAGCTCCGAAAAAAGGTAATAGCGGC
ATACGAAGCACATGGCACGGACCATCGAGCGAGCGATCTACAGCAGTGTC
GAACATTGTTCGAAAAGAAATTGAACACTTATCCAAAAGCTAAAATTATC
AAAGATAAATATGTGAAATTATGTACATGAATGGTATCTTTCATTTGTGA
CGCATGTGGGAACACTGTTAAGAAGAATCAAGTTGAAAAACATTACCAAA
CAGCGTGTAGAAACTGCTCTGTTCTATCATGTATTGATTGTGGGGTTGAT
TTCCCTGGCGATGCATATGCCTCTCACACAAGTTGCATATCTGAAGCTGA
AAAGTACCAAGGACATCTCTATCAACCGAAAGATAAGGAAAACAAAGGGg
aagcaaaacaaaaacaatggaCACAGCAACTACAGGGTGCATCCAGTAAT
GTTAAAGATCCAAAGCTACGATCACTCCTTGAAAAGTTGTCAGAATATTC
AAATATCCCAcgaaaaaggaaaaagtttGAAaatttttgcaaaaacagTG
TCAAGGTATACGATACAAAAACACTTGATGCACTTTGGGATGCATTTAAT
GAAGGCTCAAACACAAAAACGCCTACAACGAACGGTAATACACAAAATGG
ACATAACAATACAACAGATGTTAACACGAATGGTACAACgaacaacaaca
aggatgatagtgaagatgaaaataaagtcacagaatcaaagaaaaagaaa
aagaagaggaaGCTTGAAGAAGATGAGGAGAAAGaccaagataaacaaaa
aaataagaaaaagaaaaagaagatagCTGACCAAGAAGAAATAGACGGGT
TGATTTTGTTTTCAGAAGAGGTGCAAGGagaagaaaaagatgaaaatgat
aaCCAACATAAAGGGAAATTCCACTGGCATAAGGCAATCAAAACGGCGTT
GAAAGAATCAGATGATCACGAACTTCCTTTGAAAAAGCTCCGAAAAAAGG
TAATAGCGGCATACGAAGCACATGGCACGGACCATCGAGCGAGCGATCTA
CAGCAGTGTCGAACATTGTTCGAAAAGAAATTGAACACTTATCCAAAAGC
TAAAATTATCAAAGATAAATATGTGAAATTATGTACATGAATGGTATCTT
TCATTTGTGACGCATGTGGGAACACTGTTAAGAAGAATCAAGTTGAAAAA
CATTACCAAACAGCGTGTAGAAACTGCTCTGTTCTATCATGTATTGATTG
TGGGGTTGATTTCCCTGGCGATGCATATGCCTCTCACACAAGTTGCATAT
CTGAAGCTGAAAAGTACCAAGGACATCTCTATCAACCGAAAGATAAGGAA
AACAAAGGGgaagcaaaacaaaaacaatggaCACAGCAACTACAGGGTGC
ATCCAGTAATGTTAAAGATCCAAAGCTACGATCACTCCTTGAAAAGTTGT
CAGAATATTCAAATATCCCAcgaaaaaggaaaaagtttGAAaatttttgc
aaaaacagTGTCAAGGTATACGATACAAAAACACTTGATGCACTTTGGGA
TGCATTTAATGAAGGCTCAAACACAAAAACGCCTACAACGAACGGTAATA
CACAAAATGGACATAACAATACAACAGATGTTAACACGAATGGTACAACg
aacaacaacaaggatgatagtgaagatgaaaataaagtcacagaatcaaa
gaaaaagaaaaagaagaggaaGCTTGAAGAAGATGAGGAGAAAGaccaag
ataaacaaaaaaataagaaaaagaaaaagaagatagCTGACCAAGAAGAA
ATAGACGGGTTGATTTTGTTTTCAGAAGAGGTGCAAGGagaagaaaaaga
tgaaaatgataaCCAACATAAAGGGAAATTCCACTGGCATAAGGCAATCA
AAACGGCGTTGAAAGAATCAGATGATCACGAACTTCCTTTGAAAAAGCTC
CGAAAAAAGGTAATAGCGGCATACGAAGCACATGGCACGGACCATCGAGC
GAGCGATCTACAGCAGTGTCGAACATTGTTCGAAAAGAAATTGAACACTT
ATCCAAAAGCTAAAATTATCAAAGATAAATATGTGAAATTATGTACATGA
ATGGTATCTTTCATTTGTGACGCATGTGGGAACACTGTTAAGAAGAATCA
AGTTGAAAAACATTACCAAACAGCGTGTAGAAACTGCTCTGTTCTATCAT
GTATTGATTGTGGGGTTGATTTCCCTGGCGATGCATATGCCTCTCACACA
AGTTGCATATCTGAAGCTGAAAAGTACCAAGGACATCTCTATCAACCGAA
AGATAAGGAAAACAAAGGGgaagcaaaacaaaaacaatggaCACAGCAAC
TACAGGGTGCATCCAGTAATGTTAAAGATCCAAAGCTACGATCACTCCTT
GAAAAGTTGTCAGAATATTCAAATATCCCAcgaaaaaggaaaaagtttGA
AaatttttgcaaaaacagTGTCAAGGTATACGATACAAAAACACTTGATG
CACTTTGGGATGCATTTAATGAAGGCTCAAACACAAAAACGCCTACAACG
AACGGTAATACACAAAATGGACATAACAATACAACAGATGTTAACACGAA
TGGTACAACgaacaacaacaaggatgatagtgaagatgaaaataaagtca
cagaatcaaagaaaaagaaaaagaagaggaaGCTTGAAGAAGATGAGGAG
AAAGaccaagataaacaaaaaaataagaaaaagaaaaagaagatagCTGA
CCAAGAAGAAATAGACGGGTTGATTTTGTTTTCAGAAGAGGTGCAAGGag
aagaaaaagatgaaaatgataaCCAACATAAAGGGAAATTCCACTGGCAT
AAGGCAATCAAAACGGCGTTGAAAGAATCAGATGATCACGAACTTCCTTT
GAAAAAGCTCCGAAAAAAGGTAATAGCGGCATACGAAGCACATGGCACGG
ACCATCGAGCGAGCGATCTACAGCAGTGTCGAACATTGTTCGAAAAGAAA
TTGAACACTTATCCAAAAGCTAAAATTATCAAAGATAAATATGTGAAATT
ATGTACATGAATGGTATCTTTCATTTGTGACGCATGTGGGAACACTGTTA
AGAAGAATCAAGTTGAAAAACATTACCAAACAGCGTGTAGAAACTGCTCT
GTTCTATCATGTATTGATTGTGGGGTTGATTTCCCTGGCGATGCATATGC
CTCTCACACAAGTTGCATATCTGAAGCTGAAAAGTACCAAGGACATCTCT
ATCAACCGAAAGATAAGGAAAACAAAGGGgaagcaaaacaaaaacaatgg
aCACAGCAACTACAGGGTGCATCCAGTAATGTTAAAGATCCAAAGCTACG
ATCACTCCTTGAAAAGTTGTCAGAATATTCAAATATCCCAcgaaaaagga
aaaagtttGAAaatttttgcaaaaacagTGTCAAGGTATACGATACAAAA
ACACTTGATGCACTTTGGGATGCATTTAATGAAGGCTCAAACACAAAAAC
GCCTACAACGAACGGTAATACACAAAATGGACATAACAATACAACAGATG
TTAACACGAATGGTACAACgaacaacaacaaggatgatagtgaagatgaa
aataaagtcacagaatcaaagaaaaagaaaaagaagaggaaGCTTGAAGA
AGATGAGGAGAAAGaccaagataaacaaaaaaataagaaaaagaaaaaga
agatagCTGACCAAGAAGAAATAGACGGGTTGATTTTGTTTTCAGAAGAG
GTGCAAGGagaagaaaaagatgaaaatgataaCCAACATAAAGGGAAATT
CCACTGGCATAAGGCAATCAAAACGGCGTTGAAAGAATCAGATGATCACG
AACTTCCTTTGAAAAAGCTCCGAAAAAAGGTAATAGCGGCATACGAAGCA
CATGGCACGGACCATCGAGCGAGCGATCTACAGCAGTGTCGAACATTGTT
CGAAAAGAAATTGAACACTTATCCAAAAGCTAAAATTATCAAAGATAAAT
ATGTGAAATTATGTACATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038262XLOC_038262Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060951-proteinTCONS_00060951-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060951-exon-scaffold_350-1491911889:165450..165739TCONS_00060951-exon-scaffold_350-1491911889:165450..165739Clytia hemisphaericaexon
TCONS_00060951-exon-scaffold_350-1510915933:165450..165739TCONS_00060951-exon-scaffold_350-1510915933:165450..165739Clytia hemisphaericaexon
TCONS_00060951-exon-scaffold_350-1575043694:165450..165739TCONS_00060951-exon-scaffold_350-1575043694:165450..165739Clytia hemisphaericaexon
TCONS_00060951-exon-scaffold_350-1491911889:165900..166004TCONS_00060951-exon-scaffold_350-1491911889:165900..166004Clytia hemisphaericaexon
TCONS_00060951-exon-scaffold_350-1510915933:165900..166004TCONS_00060951-exon-scaffold_350-1510915933:165900..166004Clytia hemisphaericaexon
TCONS_00060951-exon-scaffold_350-1575043694:165900..166004TCONS_00060951-exon-scaffold_350-1575043694:165900..166004Clytia hemisphaericaexon
TCONS_00060951-exon-scaffold_350-1491911889:166356..166445TCONS_00060951-exon-scaffold_350-1491911889:166356..166445Clytia hemisphaericaexon
TCONS_00060951-exon-scaffold_350-1510915933:166356..166445TCONS_00060951-exon-scaffold_350-1510915933:166356..166445Clytia hemisphaericaexon
TCONS_00060951-exon-scaffold_350-1575043694:166356..166445TCONS_00060951-exon-scaffold_350-1575043694:166356..166445Clytia hemisphaericaexon
TCONS_00060951-exon-scaffold_350-1491911889:166683..166905TCONS_00060951-exon-scaffold_350-1491911889:166683..166905Clytia hemisphaericaexon
TCONS_00060951-exon-scaffold_350-1510915933:166683..166905TCONS_00060951-exon-scaffold_350-1510915933:166683..166905Clytia hemisphaericaexon
TCONS_00060951-exon-scaffold_350-1575043694:166683..166905TCONS_00060951-exon-scaffold_350-1575043694:166683..166905Clytia hemisphaericaexon
TCONS_00060951-exon-scaffold_350-1491911889:167021..167089TCONS_00060951-exon-scaffold_350-1491911889:167021..167089Clytia hemisphaericaexon
TCONS_00060951-exon-scaffold_350-1510915933:167021..167089TCONS_00060951-exon-scaffold_350-1510915933:167021..167089Clytia hemisphaericaexon
TCONS_00060951-exon-scaffold_350-1575043694:167021..167089TCONS_00060951-exon-scaffold_350-1575043694:167021..167089Clytia hemisphaericaexon
TCONS_00060951-exon-scaffold_350-1491911889:170021..170106TCONS_00060951-exon-scaffold_350-1491911889:170021..170106Clytia hemisphaericaexon
TCONS_00060951-exon-scaffold_350-1510915933:170021..170106TCONS_00060951-exon-scaffold_350-1510915933:170021..170106Clytia hemisphaericaexon
TCONS_00060951-exon-scaffold_350-1575043694:170021..170106TCONS_00060951-exon-scaffold_350-1575043694:170021..170106Clytia hemisphaericaexon
TCONS_00060951-exon-scaffold_350-1491911889:170307..170554TCONS_00060951-exon-scaffold_350-1491911889:170307..170554Clytia hemisphaericaexon
TCONS_00060951-exon-scaffold_350-1510915933:170307..170554TCONS_00060951-exon-scaffold_350-1510915933:170307..170554Clytia hemisphaericaexon
TCONS_00060951-exon-scaffold_350-1575043694:170307..170554TCONS_00060951-exon-scaffold_350-1575043694:170307..170554Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_350supercontigscaffold_350:165450..170554 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
57.6437	47.7674	16.1594	18.9091	24.6128	14.8644	19.9239	19.7078	18.7299	14.4352	20.578	16.6782	28.2329	31.2523	43.9145	42.284	28.7814	31.1264	14.152	16.9061	43.1575	33.3315	52.7921	46.7564	0	0	21.6079	19.2104	24.2098	32.2081
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR014898Znf_C2H2_LYAR
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
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BLAST of TCONS_00060951 vs. Swiss-Prot (Human)
Match: LYAR (Cell growth-regulating nucleolar protein OS=Homo sapiens GN=LYAR PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 5.192e-39
Identity = 73/143 (51.05%), Postives = 98/143 (68.53%), Query Frame = 3 
Query:   45 MVSFICDACGNTVKKNQVEKHYQTACRNCSVLSCIDCGVDFPGDAYASHTSCISEAEKYQGHLYQPKDKENKGEAKQKQWTQQLQG--ASSNVKDPKLRSLLEKLSEYSNIPRKRKKFENFCKNSVKVYDTKTLDALWDAFNE 467
            MV F C+ACG +VKK QVEKH  + CRNC  LSCIDCG DF GD Y +H  CISE +KY G  Y+   K +KG+ KQ+ W Q++       NV  PK+R LLE++S + N+PRK+ KF+N+ KNS+KV++   LD +W+ F+E
Sbjct:    1 MVFFTCNACGESVKKIQVEKHV-SVCRNCECLSCIDCGKDFWGDDYKNHVKCISEDQKYGGKGYE--GKTHKGDIKQQAWIQKISELIKRPNV-SPKVRELLEQISAFDNVPRKKAKFQNWMKNSLKVHNESILDQVWNIFSE 139
The following BLAST results are available for this feature:
BLAST of TCONS_00060951 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LYAR5.192e-3951.05Cell growth-regulating nucleolar protein OS=Homo s... [more]
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