TCONS_00060957 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060957
Unique NameTCONS_00060957
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length372

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060957 ID=TCONS_00060957|Name=TCONS_00060957|organism=Clytia hemisphaerica|type=transcript|length=372bp
AGGCGAAGAGAAAGTCTTGTCAGCTAAAATGTTTGCCCCAAACGACCCTt
CACAAGGACCAGAAGGTTATTGTTTCGTTCAATTTGCTGACAATATTTCA
GCATGCCAAGGAATGACCTTTCTCAATGGGCGTGATTTTTGTGGAAAGAA
AGTGAAAGTCAACTGGGCAACCAACTCGAACAGTGGTGGGCCAggaaatt
ataaaattatagGAAGTAAGATTTTTTTGATTAACTTCTTGACTCCTTCG
TgaatgaaataatttttaaaacctaAGAAATTGTCAAGGGTAAGATGATG
TTTTTTTCTAGTTCagatattaagcagatattcaatgggtaaaagttggt
tattgagatttattaacccgag
Run BLAST on NCBI

transcript from alignment at scaffold_350:213943..214708+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060957 ID=TCONS_00060957|Name=TCONS_00060957|organism=Clytia hemisphaerica|type=transcript|length=766bp|location=Sequence derived from alignment at scaffold_350:213943..214708+ (Clytia hemisphaerica)
AGGCGAAGAGAAAGTCTTGTCAGCTAAAATGTTTGCCCCAAACGACCCTG
TAAGTTTCATCTTCACTTCACTTCACATTCTGCCATGCTTTATTATCTTA
AATCCTTCCCAAGAGATGAGTTCAATTGGCTTTCTGTTTAAAATTAGGTT
ATGTAATAACTAACTGCAATATCATGCAATTCTGGATATTGAAATCAaac
ttactttcaaactttcagtCACAAGGACCAGAAGGTTATTGTTTCGTTCA
ATTTGCTGACAATATTTCAGCATGCCAAGGAATGACCTTTCTCAATGGGC
GTGATTTTTGTGGAAAGGTTTGTGTCTATTTTTTTCTGTACaacaagttt
tgattttttttaaatcaagtttgtaAATATCAATAAAAATTCTGGAAAGG
CTCCTGGTCTTGAAANTTTTTTTTAATGAAGTTTGTAAATATCAATAAAA
ATTCTGGAAAGGCTCCTGGTCTTGAAAAATGCTACTAAAATGATAAAGTA
GCTACTTTTCTTATTATCATCTTATTGATTTATCTATTTTAGAAAGTGAA
AGTCAACTGGGCAACCAACTCGAACAGTGGTGGGCCAggaaattataaaa
ttatagGAAGTAAGATTTTTTTGATTAACTTCTTGACTCCTTCGTgaatg
aaataatttttaaaacctaAGAAATTGTCAAGGGTAAGATGATGTTTTTT
TCTAGTTCagatattaagcagatattcaatgggtaaaagttggttattga
gatttattaacccgag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038265XLOC_038265Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060957-exon-scaffold_350-1491911889:213943..213991TCONS_00060957-exon-scaffold_350-1491911889:213943..213991Clytia hemisphaericaexon
TCONS_00060957-exon-scaffold_350-1510915933:213943..213991TCONS_00060957-exon-scaffold_350-1510915933:213943..213991Clytia hemisphaericaexon
TCONS_00060957-exon-scaffold_350-1575043694:213943..213991TCONS_00060957-exon-scaffold_350-1575043694:213943..213991Clytia hemisphaericaexon
TCONS_00060957-exon-scaffold_350-1491911889:214161..214259TCONS_00060957-exon-scaffold_350-1491911889:214161..214259Clytia hemisphaericaexon
TCONS_00060957-exon-scaffold_350-1510915933:214161..214259TCONS_00060957-exon-scaffold_350-1510915933:214161..214259Clytia hemisphaericaexon
TCONS_00060957-exon-scaffold_350-1575043694:214161..214259TCONS_00060957-exon-scaffold_350-1575043694:214161..214259Clytia hemisphaericaexon
TCONS_00060957-exon-scaffold_350-1491911889:214485..214708TCONS_00060957-exon-scaffold_350-1491911889:214485..214708Clytia hemisphaericaexon
TCONS_00060957-exon-scaffold_350-1510915933:214485..214708TCONS_00060957-exon-scaffold_350-1510915933:214485..214708Clytia hemisphaericaexon
TCONS_00060957-exon-scaffold_350-1575043694:214485..214708TCONS_00060957-exon-scaffold_350-1575043694:214485..214708Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_350supercontigscaffold_350:213943..214708 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060957 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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