TCONS_00060958 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060958
Unique NameTCONS_00060958
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length355

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060958 ID=TCONS_00060958|Name=TCONS_00060958|organism=Clytia hemisphaerica|type=transcript|length=355bp
TTTAGATATCTAAAACTTTTAAGATATACATGGAGATAACAAAAGTGTTC
AAAGCTTGTGTGAAAGCAGCTAAAACAAGGAATAAAGTTGACACCACAAG
TGATATACTACCAAgaagtaaaaagaaaaagtctgaCGAAGTCTCATTCA
ACTCAAAGGCCATTGAAGTGGTTGGCGgaataacaaaatttaaaacattc
ttGGTTGATTGTCAGTCTGATTATCTAGATGAGTTCAGCCACCTTTCATT
CAGCAGTTCAATGCAAGACGAAGAACGTGATCAGATTGATGAAGATGCAC
AGAATTTCATCAAATCTTGTTCAACAGCGATACACAAACTCAAACCCTCA
GGTAT
Run BLAST on NCBI

protein sequence of TCONS_00060958-protein

>TCONS_00060958-protein ID=TCONS_00060958-protein|Name=TCONS_00060958-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
MEITKVFKACVKAAKTRNKVDTTSDILPRSKKKKSDEVSFNSKAIEVVGG
ITKFKTFLVDCQSDYLDEFSHLSFSSSMQDEERDQIDEDAQNFIKSCSTA
IHKLKPSG
Run BLAST on NCBI

transcript from alignment at scaffold_350:1061..2587-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060958 ID=TCONS_00060958|Name=TCONS_00060958|organism=Clytia hemisphaerica|type=transcript|length=1527bp|location=Sequence derived from alignment at scaffold_350:1061..2587- (Clytia hemisphaerica)
TTTAGATATCTAAAACTTTTAAGATATACATGGAGATAACAAAAGTGTTC
AAAGCTTGTGTGAAAGCAGCTAAAACAAGGAATAAAGTTGACACCACAAG
TGATATACTACCAAGAAGTAAAAAGAAAAAGTCTGACGAAGTCTCATTCA
ACTCAAAGGCCATTGAAGTGGTACTGTTTTAATAGTTGATAATTTGTAGG
CCGCAACCTTTATTAAGTTTTCCTGTTGTCTCTTTCTATTCCAACCAGCC
CACATCATAGGCAAACTAATGAAACTGGGTTATGAAAAGTTGAGACTATG
TAATGAATAAGTGTAATTATATATTAAATAATGATCTATTCTCTGCCGTA
TTTCAGGTTGGCGGAATAACAAAATTTAAAACATTCTTGGTTGATTGTCA
GTCTGATTATCTAGATGAGTTCAGGTAAGGCAGAAGCATAGCACACAATT
AAGTTCGAAATAACAACCGAAAATTTGTAGCTCTAATCTAACACAAAGTT
TACACAACAAATTATTTTATCATAAATTAATTCTTGATTAATTAATCTTA
CTAAACGAACTGACTAAAACAATCTTTTTTTTCGAATAAAATGGTAGCCT
TGGCTTTAAGAATATAATGCTAATCAAAAAACTACAGATAGCTGATTTGA
AAAGAAATTATCTAAAATGAATGTGTTCGAGCAGTGAGGGAAAATGTGAG
AATTAGTTTTTTGAGAAGAAATTGTTGCAGTGGCAGGCAGTGGCAATCAT
ATACTAAATTGTAAATTTCTTTTCCATGTAATCAATTGCAATTTTTGGGG
GGTATTTGGTACCCTTGACTATAAATAGTGAATCCCTCACCAAAAACCAA
ATAAGCGGAAATATTGCTGTTTTTTTTATGATTTTCAAAAAAAGATGTCC
TCCAAGTTTTTTGCCACAAATTCTATTTTCTTGTTACTGCAGTAGCTTCA
AATTTTTAAATGACCTCAAAATATCTAATGTTTAGAGAACGAAAACTTGG
GCTTCAAAAAATATATAAAAAAATATATCCTTATTGGATCAGGAATTTTA
TCTAAAATGCAATGTTAGTTTTGAGGATTTAGAATTTACTCTTAAGATTT
GCGGCAGGGATTTTTCTAAGTACTTTGAGCTGGGACCACTTTATTGTTAC
TTTAGATTGATATTAGTTATTTTTTGCTTGTAAACAAGAAAAAGTTAAAT
TTTGCTAGAAAACATATTGCTATTTTGGATTGATTTTGGATTGAAAAACT
CAACTGAAATTTTGTTCTCCTTAAGAAACATAGTAAACAACTTTCAGTTC
TTCAAGTAAAATAAGGACTAAACAACACGATTNTAGTAAACAACTTTCTG
TTCTTCAAGTAAAATAAGGACTAAACAACACGATTAAACATTTATTTTCC
TGTTTTTCAGCCACCTTTCATTCAGCAGTTCAATGCAAGACGAAGAACGT
GATCAGATTGATGAAGATGCACAGAATTTCATCAAATCTTGTTCAACAGC
GATACACAAACTCAAACCCTCAGGTAT

Coding sequence (CDS) from alignment at scaffold_350:1061..2587-

>TCONS_00060958 ID=TCONS_00060958|Name=TCONS_00060958|organism=Clytia hemisphaerica|type=CDS|length=972bp|location=Sequence derived from alignment at scaffold_350:1061..2587- (Clytia hemisphaerica)
CCACCTTTCATTCAGCAGTTCAATGCAAGACGAAGAACGTGATCAGATTG
ATGAAGATGCACAGAATTTCATCAAATCTTGTTCAACAGCGATACACAAA
CTCAAACCCTCAGGTGTTGGCGGAATAACAAAATTTAAAACATTCTTGGT
TGATTGTCAGTCTGATTATCTAGATGAGTTCAGATGGAGATAACAAAAGT
GTTCAAAGCTTGTGTGAAAGCAGCTAAAACAAGGAATAAAGTTGACACCA
CAAGTGATATACTACCAAGAAGTAAAAAGAAAAAGTCTGACGAAGTCTCA
TTCAACTCAAAGGCCATTGAAGTGCCACCTTTCATTCAGCAGTTCAATGC
AAGACGAAGAACGTGATCAGATTGATGAAGATGCACAGAATTTCATCAAA
TCTTGTTCAACAGCGATACACAAACTCAAACCCTCAGGTGTTGGCGGAAT
AACAAAATTTAAAACATTCTTGGTTGATTGTCAGTCTGATTATCTAGATG
AGTTCAGATGGAGATAACAAAAGTGTTCAAAGCTTGTGTGAAAGCAGCTA
AAACAAGGAATAAAGTTGACACCACAAGTGATATACTACCAAGAAGTAAA
AAGAAAAAGTCTGACGAAGTCTCATTCAACTCAAAGGCCATTGAAGTGCC
ACCTTTCATTCAGCAGTTCAATGCAAGACGAAGAACGTGATCAGATTGAT
GAAGATGCACAGAATTTCATCAAATCTTGTTCAACAGCGATACACAAACT
CAAACCCTCAGGTGTTGGCGGAATAACAAAATTTAAAACATTCTTGGTTG
ATTGTCAGTCTGATTATCTAGATGAGTTCAGATGGAGATAACAAAAGTGT
TCAAAGCTTGTGTGAAAGCAGCTAAAACAAGGAATAAAGTTGACACCACA
AGTGATATACTACCAAGAAGTAAAAAGAAAAAGTCTGACGAAGTCTCATT
CAACTCAAAGGCCATTGAAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038266XLOC_038266Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060958-proteinTCONS_00060958-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060958-exon-scaffold_350-1575043694:2418..2587TCONS_00060958-exon-scaffold_350-1575043694:2418..2587Clytia hemisphaericaexon
TCONS_00060958-exon-scaffold_350-1575043694:2164..2231TCONS_00060958-exon-scaffold_350-1575043694:2164..2231Clytia hemisphaericaexon
TCONS_00060958-exon-scaffold_350-1575043694:1061..1177TCONS_00060958-exon-scaffold_350-1575043694:1061..1177Clytia hemisphaericaexon
TCONS_00060958-exon-scaffold_350-1510915933:2418..2587TCONS_00060958-exon-scaffold_350-1510915933:2418..2587Clytia hemisphaericaexon
TCONS_00060958-exon-scaffold_350-1510915933:2164..2231TCONS_00060958-exon-scaffold_350-1510915933:2164..2231Clytia hemisphaericaexon
TCONS_00060958-exon-scaffold_350-1510915933:1061..1177TCONS_00060958-exon-scaffold_350-1510915933:1061..1177Clytia hemisphaericaexon
TCONS_00060958-exon-scaffold_350-1491911889:2418..2587TCONS_00060958-exon-scaffold_350-1491911889:2418..2587Clytia hemisphaericaexon
TCONS_00060958-exon-scaffold_350-1491911889:2164..2231TCONS_00060958-exon-scaffold_350-1491911889:2164..2231Clytia hemisphaericaexon
TCONS_00060958-exon-scaffold_350-1491911889:1061..1177TCONS_00060958-exon-scaffold_350-1491911889:1061..1177Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_350supercontigscaffold_350:1061..2587 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
32.0757	30.0941	11.5557	8.34447	35.0635	25.3771	25.9302	26.6154	30.3059	35.256	23.1418	25.7318	20.6861	19.4687	17.9377	20.7307	26.9978	27.298	14.7238	15.4074	16.2112	14.0955	37.6133	35.2091	19.5672	15.3677	26.6559	20.6247	33.9833	34.3488
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019529Syntaxin-18_N
Blast
[Close]
BLAST of TCONS_00060958 vs. Swiss-Prot (Human)
Match: STX18 (Syntaxin-18 OS=Homo sapiens GN=STX18 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 7.546e-20
Identity = 46/116 (39.66%), Postives = 71/116 (61.21%), Query Frame = 3 
Query:   30 MEITKVFKACVKAAKTRNKV----------DTTSDILPRSKKKKSDEVSFNSKAIEVVGGITKFKTFLVDCQSDYLDEFSH-LSFSSSMQDEERDQIDEDAQNFIKSCSTAIHKLK 344
            ++IT +F+A VK  KTRNK            +  ++  RS + K D   F+S+A EV+  I K + FL++ + DY++ +SH +S    M D ERDQID+DAQ F+++CS AI +L+
Sbjct:    3 VDITLLFRASVKTVKTRNKALGVAVGGGVDGSRDELFRRSPRPKGD---FSSRAREVISHIGKLRDFLLEHRKDYINAYSHTMSEYGRMTDTERDQIDQDAQIFMRTCSEAIQQLR 115
The following BLAST results are available for this feature:
BLAST of TCONS_00060958 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
STX187.546e-2039.66Syntaxin-18 OS=Homo sapiens GN=STX18 PE=1 SV=1[more]
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