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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060962 ID=TCONS_00060962|Name=TCONS_00060962|organism=Clytia hemisphaerica|type=transcript|length=8422bp protein sequence of TCONS_00060962-protein >TCONS_00060962-protein ID=TCONS_00060962-protein|Name=TCONS_00060962-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1455bp MDEAIKVMPRTHHRLVLFKHRVITEAKLNKPTQFDMGKFRYENENMLAQMRun BLAST on NCBI transcript from alignment at scaffold_350:72896..101445- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060962 ID=TCONS_00060962|Name=TCONS_00060962|organism=Clytia hemisphaerica|type=transcript|length=28550bp|location=Sequence derived from alignment at scaffold_350:72896..101445- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_350:72896..101445- >TCONS_00060962 ID=TCONS_00060962|Name=TCONS_00060962|organism=Clytia hemisphaerica|type=CDS|length=74256bp|location=Sequence derived from alignment at scaffold_350:72896..101445- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00060962 vs. Swiss-Prot (Human)
Match: CFA46 (Cilia- and flagella-associated protein 46 OS=Homo sapiens GN=CFAP46 PE=2 SV=3) HSP 1 Score: 626.32 bits (1614), Expect = 0.000e+0 Identity = 368/1121 (32.83%), Postives = 602/1121 (53.70%), Query Frame = 1
Query: 10 MDSTIRSLLGKAEQEYKSQYLNEAFGKLKGARTNTN--DQTDPFHSDLYVICAEVALKLQEDGIVQSCMKLFFQKIPPTNQFLCRAYLCQAQLYAPKSAEEKDKLQICIGYLMKAINFAKSNARYHFLVYNASVLYWAFVRPFMRPHYRQYLTKSFHMVVKALDETNDPDYEWRAQLMVGVMECHIDTGCRDDALHVGLAALSFMKSKIPHKCKEIFILQLQHKLLEPPKIQSIIKGSPELSLIYRMNKIKIQGE--NLSANQINEMERIFKHIMEIDDTSDGRTSSSNSNKRPNLPLTATEKQSLLLDFAKLCCEVKQIELAGKSIKQLLNLEDIDERFACEVEFLNCQYKVERLGDKRESYSKSAIEVRLNAIETLSEHLSQAHRMNEHNLIQVGCVTMWNLCLPLLQNNLRSKVRKYLIQIAEFLEEIDSLLNLLRCQVHTEVAKCEENVNQLQSALSHLSKAMTFDDGDLYRIRIENSLNRIKLKALLYQVPERAEDHAAMIIEQAEGGNDSYNSSKMQVYLSKAGSLLAPDTFMLAIDGEMELSSGTPASQCSVEALAKRVKAYQNGMGIIEGHVKRVEGTDSHERIRLWADLVKVARKQNVWTVTRVASKFCLLYEDMRSLDFPVGQPPDSGKSITPTGGGEAGVITKEEMRGRTQFSEQDDITRIFAEINFIYAESLVQLLHQEGIELLNQAIPPKDTKLRPKKYQNNPILVEEMEEWKLYTAWIDSTCQEAITRFSTACDHGSHLEDPIIVCNAAIYVWNYTKHLMDKKQYTKLTKHYQPLFNLLRRTGHGTETIFLCDFTNALAMGYIENHMPSTNAQPPDDTKGTKKAGTPTLSLSPQMRKKSAKPSSLKIKGTPSATHAESTQDLQHALDVLEHTLGLISGNDKSNMVPIAVRHKLIKTQVLCKALMKHHLPKNLG-HDSDSPESQGPMCKALFALEALSLKTQSIAEFSACPSIKEIIQRVENAKWTDNLLQLQVWSRIAVLTLDKGDFRTCISCCDKALKLESKIKINPKINDKEKHRYVIFQEMLHYASLMKGKSLVATMNGRNEIKMNGLNCFIDAARYASVCKSYDLVLSAARYYWNNICTSLSKPIERQLLQEPIKSLLSCINK 3357
MD I L +AE + + L +A+ +K A + D ++ F DL+V+CAE ALK+++ + + C++++F+ P QFL RA+LC+AQ+ APKSAE ++ + C+ MKAINFAK RY+FLVYNASVLYW VRPF++P YR +L S ++ L +T + D EWRA+LM+ ++EC++ G +++A A F+KS +P K ++IF + ++H+L++ +++ K S LS+ + +N +K + E +L + + + ++H+ N + P++ + EK LL + A+ +K +E++ + L +E D E+E L C+ + RL K + Y+++A+E +L+ I+ L L +A R+ + +I V C T WN CLPLLQ+NLR +RK L +A+ LE++DSL+ LLRCQVH E+A+ EE+ ++L+ A HL KA D LYR RI+ + R++L LYQ PERAED A M +EQA+ + K + L AG LAPD F + +D E E T ++ L + + + GH++R+ + ERI++WA+L KVARKQ VW V R AS+FCLLY++++ + + GK G ++ E+ + Q D+ R FAE+ FI+AE+ V LL EG+EL ++AIPP+D P Y P V EW Y WI+S + A+ + + + G +++ IV NA +YV N+ HL+ + +L L ++++ TGH + + L N LA G I + +P A+ +K +P++ S A +T +++ A++V E L L +G+ VP R +LI T V K L++ + LG + + E + + L ALE S + +F+ PS+ ++++ W+D L++LQ +R+ D T ++C +A LE IK K +E + EML A+ ++G+S++ + GR ++++ F ++AR+ + S LV+ AAR+YWN LS + R+ + +K L+ INK
Sbjct: 1 MDLVITQELARAESQQDAASLKKAYELIKSANLGKSEFDPSESFSPDLFVLCAEQALKMRQPEVSEDCIQMYFKVKAPITQFLGRAHLCRAQMCAPKSAENLEEFENCVTEYMKAINFAKGEPRYYFLVYNASVLYWQMVRPFLKPGYRHHLIPSLSQIINVLSQTEEEDKEWRAELMLELLECYLQAGRKEEAARFCSTAAPFIKSHVPQKYRQIFSVMVRHELMDELQLKEEKKNSISLSVTFYINMLKAKAEQNDLPGDISVILRKAYRHL-----------GHYNHQRFPSI---SEEKMLLLFELARFSLTLKCMEISSACLSDLKKMESKDPGKLIEMECLECESEALRLESKMKVYNRAAVEAQLDIIQRLDVALQRAVRLGDPRVIHVVCATQWNTCLPLLQHNLRHHLRKPLAGVADVLEKLDSLMTLLRCQVHMEMAQIEEDEDRLEPATEHLRKAARLDSLGLYRDRIQMASTRLRLCTTLYQAPERAEDKAIMAVEQAKKATPKDSVRKKRALLVNAGLALAPDAFQIVLDSENEAKVSTGKNRGRFTYLCAKAWHHTVSVDKAAGHLRRLGNENDKERIQIWAELAKVARKQGVWDVCRTASRFCLLYDNVKVKKLRLRR----GKKKRGRDGSVQDTWSQPEVVLQRQVC--PDLLRKFAEVGFIHAEATVHLLRSEGVELNDRAIPPEDLSQHPAGYVPEPPEVN--AEWITYRTWIESLSRCAMNNWLRSAEIGQEIQEAWIVQNAVVYVLNHNHHLILAGRQKELVDALYHLLSIVKATGHSGDPVMLVTLCNTLARGLIISWIPVQAAEK---------------------SRKFMRPNAFH-----SPLDAGATSEIKTAVEVCEFALNLTNGSAPEETVPTGTRQQLIATWVKAKQLLQQQIGPRLGTEEQGTNEDVSSVTRVLVALEMYSCNGLGLMDFTV-PSLAQLVKMASECNWSDPLVELQTLTRLTHFAHAARDHETTMACAHRA--LEMGIKYLKKFGPEESR---LVAEMLCTATAIQGRSIMENLKGRKQLRLVAAKAFTESARFGGIAGSSALVMLAARHYWNAWLPLLSSAVYRKKAKGALKRLIGIINK 1067 HSP 2 Score: 186.808 bits (473), Expect = 1.099e-46 Identity = 262/1156 (22.66%), Postives = 483/1156 (41.78%), Query Frame = 2
Query: 4529 LPTSYEKWALFTLPEKLNEYFVMDKTGYYINKTSITRPTLSMFYYEKLCKNLNLIGYHHLGIPVLSLMSYLANDVLEMKDLTTLIDLKMTSLCEQLNMVNACTHYHTKLSSLKLTMEEQEASXXXXXXXXXXXXQVLFEEQRQE-NETFGFIKSHQSIGTLQKHKPL-VSSWTKRE--------VWVQVAEYLIGKYQFDNARVYLEEASTSANVFSDETIKEMITFNYALISFQQRDWGKVMSTITSLKWKQDNQEFWLKKILLLCDAIHNF--SIQEISFQNHIDDTGFEKAKKILQNAVYTIQQACATRTNGLYLGPYMKAKLLYRLGGL--------VYTESTEKRYRDDDKQRIALLKEACKRLDESLEILIAVEYKKDTVEVLLLKVKIQRELALLNDDLEAKKMSLVETLTMAN--TCEQSA-------------TSMAAD------MSALSSKEEMRDIFLPIQHDVIMARKLCVAVLYDILLIATEEKKKLRLIEEAKAPMERIIDEYVDITPTLSPSQQEWQKTLSTAAEKIIMMVNSIKTLGLSIPLFSAEASLEIGYVLKLLS-QLNSASRYDSWD--------LSMIKKF-VDGEEESDSKTS-----IASTPLDLMLEYEAFRHQQI-------QSVHNMTQALQIGLQHSLTTVVKDASYQLLDCVGSFDAHSCVQLLALFQSATASLRCQQIVERVFLDPNTSASASLYKQKLSLSQACVSQMDNVNSSL---------AEHEWYKRMSIHKTHLDIIKELPFNITYIILQHSPSKDFLYGGVLEKQQSSTANKKR---SANRDVIGRISTNQKLLDDLLAMMEEFKTMVRSEHSREIYIQAQIARRHGFFNDKKYEEKDCELK------SELEEIKNHFDALITTLEAYM-GPLL---------------TKIHQSLSIDP-IPQTVVILADEDLLEFPLECLSVFRRSEITTVSRDFSLQFFYHRFKRGEVDFACPRGEHAKSATPVXXXXXXXXXXXXXXXXXXXHVEKKSSSGGKEFTIDKENIVVDISQLKYLLDPLQDGIKGSPNHAETILEELTSRFKGK-VSKWSGIKGSEDVTNAKEMQLLLQISPAFLFHGYERLLALLPAFSMLPLDLSDCMMALLVDHVHTAKSNSRQ 7699
LP S E+WA ++ PE++ D++ +N +SI +PT S+++ + L K L + H L +PVL L +++ V+ K L+ L L++ C +L + A + + + ++ EQ + R+E+ +E+ ++ L EE NE ++ + K K L ++ T R+ +W+ AE L+ + AR+ L EA + + + A ++ +++++G+ I + ++EFW L L +A+ + S +E + HI F+K L NA +++ R N L L +M L R L TE TE LLKE L E I K++ V+V L + KI+R A D E K +E +A E+ +MA + + L S ++++++ P+ + + V + D+L EE + + +E+++ +Y+ T + +W T A + + S++ L + A G L LL+ Q + W+ LS +K ++ EEE +K+S + P + E + + + Q+ + Q LQ+ L L V AS ++++CVG+ D + Q LAL QS +AS + + V L + S+S L L Q D +SL A + ++ + + + H +++ E+P + L S + LYG EK + TA K + + R++ + LLA ++F+ ++ ++Y + + EEK+ ++ LEE+ L++ +A + P + T Q ++ P + +V++AD LLE PLE LSVF I++VSR+FSLQ ++R + E + + +S P + + KK G TI + I+VD K+++DP ++ +I +++ RF+ S+W+G GS+ + + + L F F+G E L+ + ++ ++L +C +A+L+D + +S R
Sbjct: 1417 LPMSIEEWASYSCPEEVLSVLKQDRSDSTVNPSSIQKPTYSLYFLDHLVKALQKMCLHELTVPVLQLGVLISDSVVGSKGLSDLYHLRLAHACSELKLREAAARHEEAVGQVCVSELEQASCRKEIALKKEKNKEPLLEESLPALNEQTLPVQPGEIKPLDAKDKILKMNGETGRDLDGTSFPHLWMLKAEVLLEMNLYQPARLLLSEAYLAFQELDEPCAEAQCLLLLAQLANKEKNYGQAKKMIAQAQHLGGSEEFWYNSTLTLAEALLSMEHSGREATV-CHI----FQK----LINAFKILKK---ERPNRLPLLEFMITDLEARCLSLRVRVAQHSAVTEPTECSL---------LLKEMDDGLLEIERKFIDCGCKENCVDVKLERAKIKRLRAQNEKDEEQKTAYYLEAYGLAQGAVAEEEGRLHSIQGLYGLAQGAMAEEEGRLHSVQGLLSLQDLQNVNTPLMRKLARLKLGLVEMALDMLQFIWEEAHGQ---QSEQGSLEKLLADYLQNTSDYTSVGLQWFTLKRTLAHGALAQLGSLQPLSVGCVEIRARLLGLAGRALHLLAMQADPVHPTCYWEAGPSVGAKLSGLKSLELEVEEEGATKSSRDPPASRAAPEEHCRRGEDLKRRMVLAQQYLAQASEVLLQCLQVALGSGLLDVAAAASLEMVECVGTLDPATTCQFLALSQSCSAS----ETMRDVLLAATANTSSSQLAALLQLQHQLRCQ-DRTTTSLGARVEQRLAAVSKAWQNLCVTEQHFNLLNEMPPTFWILFLHLSGDRSRLYGAAYEKPKFITAAKGKVQAVGGSCKVMRLAISPTAFSHLLACAQQFRKQTQA----QVYSEDMALNIGSEPEGLQVEEKERPVQRLSSVLGPLEELLQPLFPLLSLSKARVQTPAVVADSGKSKGKDKERKTSTGQHSTVQPEVADKIVLVADRHLLELPLEGLSVFDEGTISSVSREFSLQMLWNRLHKEETEGGVKK--EGRSRDP-----------------KKRSLAKKGRKGSIPRTIPPDCIIVDSDNFKFVVDPYEEAQGPEMLTPVSITQDILERFQDTFTSRWAGHLGSKHFPSQAQWEQALGSCSGFFFYGMESFLSHILVERLVAMNLQECQVAVLLDLARSYQSLKRH 2520 HSP 3 Score: 166.777 bits (421), Expect = 1.064e-40 Identity = 89/247 (36.03%), Postives = 146/247 (59.11%), Query Frame = 2
Query: 3761 DEDLNLRAALYGVLFQTFADKGDFEVALVTMDEAIKVMPRTHHRLVLFKHRVITEAKLNKPTQFDMGKFRYENENMLAQMWCRVAKHSKKQPDQLSAYINAIEALTSDENLYQKVDYLAEFGEWLFVHEYPVSKATDQFYFAISLVL---------------NGMY-GTGM-PNNILTDEDEIKLLSHVTDIKQMDWLIRLYVMLSDMLQQKGKEYERLVLAAATLVQRIWKVSIGNAEKAIKNGVP 4450
++DL LRAALYG+LF + AD+ D+E L +DEA++V+PRT HRL++FKH VI +AKL + ++ KF+ E+E+ LA+MW R+A +S +L+ Y NAI+AL E +QKV+YL EFG+WL +P+ +A+ ++L +G Y M P + +++ +E L + ++Q++ L R++++L+ +L + YE LAA + IW+VS+ A K++ P
Sbjct: 1104 EDDLALRAALYGLLFHSHADQDDWEGGLKVLDEAVQVLPRTAHRLLIFKHMVIVKAKLGQNFSMEIQKFKAESEDYLARMWHRLALNSPSVSGELACYNNAIQALQKPEMEWQKVEYLMEFGQWLHHRHFPLEDVVFHLRWAVEILLAMKPPGDVPEPQPTPDGEYVAVEMPPRSPVSEAEEAVSLEQLRSVRQLEALARVHILLALVLSPGAEGYEDCCLAAYAFFRHIWQVSLMTAGKSVLENRP 1350 The following BLAST results are available for this feature:
BLAST of TCONS_00060962 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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