|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060976 ID=TCONS_00060976|Name=TCONS_00060976|organism=Clytia hemisphaerica|type=transcript|length=1509bp
CATTTATCTGTTTCTTTCATTCAGATATAATAAAATGAATATATGCAATA
ATTACATACCAAAGCGACTTTTCCGATTGGCTGATGTGACTAGACGTCTG
GTGACGAGTGCCCGTTTTGCAGCGGCCAATCAACAAGTAGAACGAGTACA
GGAAGAACGAAATGAACTGGAAGAAAGTGACCCGtttctgaaaaatgaaa
tcaagAAATATAATACAGGTAAAAGATGGTTGGCACGAATGATGGGTCAA
GATCCGGAAAATTTTTCACAGAAGGATGTGGATGAAGCTATTGCATATTT
GTTGCCAAGCAGTTTGTTTGCCAAAGATGCACGACCTGTCATGAAACACC
CTTATGAACTCTTCCCCAAAACTAAAGAATCATTGTTCGATAGTAACAAC
CGACCACTTTCAAGTGCTTTTTACACTGGTAAACCAAAGTTTTACGATTT
GACGTACCAAGTATGGGAGTTGAAGGAAAAATTAGACACCAATACCGCCA
TTACGGCTGAAGACTCCCCTGCGCCGTCCAATGAAGATAAAGTGATGCAA
TGGATGAAACAATATCAACTGGAGCAAAAATTAAACGAGAaactaaatga
aaaAATATCAACTGGAGCAAAAATTAAACGAGAaactaaatgaaaaatta
tatgaTATGATAATGTTTCGGTTGAAAAAGTTATCGCAACATGAACGAGC
TAATGAGATTAAAGGTTTCTTGCAACAATACCAGGTGCCCACGAGTTCAG
GAAGTACTGAGCAGTTGAAAGATGTGGAGATTTACGACGGAGTTGCGCGT
GCTATGGGTTACCGTAAGACGTCTATCGCCGAAGTTATCGTTCGTCCCGG
AGAGGGTCACATTATGGTCAACGATAAGAAATTCTtggattatttttatt
tgagaaacGACCGCGAGCAAATTATGTATCCTCTTTTATTGACTGAGTCT
TTAAGCAAATTCAACATCGAAGCGAACGCAATCGGAGGCGGTTCGACTGG
AAAATCTGGTGCTATCCGCTTAGGGATAAGTCGGGCGATCGCTGCGTTAT
GCCCAGAACATTTCGATGTGCTGAATCAGCATCAGTTATTGACTAGAGAC
TATCGGCAGAAAGAACGTAAGAAGCCAGGTCGAAAGAAGGCTCGACGTGC
TTTCCAATGGGTCAAACGTTGAAAAGGATGACTCTTCCATTGTAAACGCA
ACCTTTTCAATATAATCAgtgtaaaagaaaaagagatttATTTTCCCATA
ACATTTTTTTCTGCATTCTTTGGTTGATCTTTTTGAAGCTTTTCAACCTG
ATCGAATTTCTCATTGAAACAGAGCCGCTGACTTACTTTAGTGGGATata
ttttcgcggggattaaatttcgcagatctcgcggatttgggtgtcattaA
GTctaatggaaatttggaaaggccttaTCCACGAAATATTactaaaaagc
tcaaaaaatgttaaataaatatattttgaatgtttGCTAAGGCGCTGATA
ATGcctatt Run BLAST on NCBI protein sequence of TCONS_00060976-protein >TCONS_00060976-protein ID=TCONS_00060976-protein|Name=TCONS_00060976-protein|organism=Clytia hemisphaerica|type=polypeptide|length=213bp
IYLFLSFRYNKMNICNNYIPKRLFRLADVTRRLVTSARFAAANQQVERVQ
EERNELEESDPFLKNEIKKYNTGKRWLARMMGQDPENFSQKDVDEAIAYL
LPSSLFAKDARPVMKHPYELFPKTKESLFDSNNRPLSSAFYTGKPKFYDL
TYQVWELKEKLDTNTAITAEDSPAPSNEDKVMQWMKQYQLEQKLNEKLNE
KISTGAKIKRETK Run BLAST on NCBI transcript from alignment at scaffold_350:185809..189136- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060976 ID=TCONS_00060976|Name=TCONS_00060976|organism=Clytia hemisphaerica|type=transcript|length=3328bp|location=Sequence derived from alignment at scaffold_350:185809..189136- (Clytia hemisphaerica)
CATTTATCTGTTTCTTTCATTCAGATATAATAAAATGAATATATGCAATA
ATTACATACCAAAGCGACTTTTCCGATTGGCTGATGTGACTAGACGTCTG
GTGACGAGTGCCCGTTTTGCAGCGGCCAATCAACAAGTAGAACGAGTACA
GGAAGAACGAAATGAACTGGAAGAAAGTGACCCGTTTCTGAAAAATGAAA
TCAAGAAATATAATACAGGTACGTGTGATCATGTATTTTGTAAGTGAAGG
TGTGTCCCTTAGATTGATTCGTTTCATCTTTAAAGTTTTATGTTTGCAAG
TACTTGTTTAGTCCGAACAGAAATTTGAAGGAAATTTATTTTCATTCATT
TTGATAAAGAAGGACGAAGGATAATCCCGTCGATTAAGACGGCGTGAGTC
CTATCCAGTCATAGTTACCTATTCCAGGATATTAGATAAGGCGTATCGGC
GACATTACACGAAAACAAGAGCTGAGTGCTTATTCATGCGATATCCCAAA
TATGAATCAATAAGCCGCTCTTATATCAGAGTGTATTATATCAGATTTCC
TTCCCATTGTATGGGTTGACACGTGTGAATCTACCTCTAATTGCCAAGTG
AATCGTAGCACCGATTCGGATTCGATTCTTGGTCTCCCGTTTAGGATTTG
AGAACGATGGTCATTACGTCTTCTTTTTATTAGTGGGAGAAAAAGGTTTT
GACTTAAAATTAGTTAACGATATTATTCAAATGAAAATGGACGGACCATT
ACAAAGTAATATTTTATAACTTTCTAAATAGTTGAAATGTTCTTAGTCCC
TTATAGGAAAACGAGTAATAAGACCGGCTTAAGATAAAAAATGTTTATAA
AATTATTAATTGAAATTTATTAAAAATTGTTTATGTTTGCAGGTAAAAGA
TGGTTGGCACGAATGATGGGTCAAGATCCGGAAAATTTTTCACAGAAGGA
TGTGGATGAAGCTATTGCATATTTGTTGCCAAGCAGTTTGTTTGCCAAAG
ATGCACGACCTGTCATGAAACACCCTTATGAACTCTTCCCCAAAACTAAA
GAATCATTGGTAAGACTCTGTGTTTATTCAGCTTAATCCAGGTTTAAGTC
TCCGACGTGTGAGGTTAAAATAGAATGGAACCTTTTTTGGTAAATTCAGG
TGAGAATCCTTAAAGTAACTTAGAGTGGAAATCAATATTTTCAACCAACC
AATATTAAAAGCAACATTTTCAGTGCCGCCTATTCGCGTATTTTATCCAT
AGAATTATTATCAGATAGAATGAATTCATGCTTTTTTCCTCAAAATGAAG
CGTGTCTGTAAGGGGTCCCTTAGTTGCAATGGGAATTCAATTGCACGTGN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTTGAATTCTCAAAAAA
TTATGCACATAATTTGATTATTTTCAACTGGAAATTTCGGGCACTTCGGT
CCCCTCAATGCAAATAAGAATTACATATTTGAATTCAGCTCATTTTATAG
ATTCACCAGTGTTGAAAACTACATATTTGAAAACGCACTTCTAAGAAAGG
AAATTTGGGTGTTAAGTTTTCACCTAAATTAGATATTCTTTCCGTATTGA
CTAAAATAGATTTTTTAATTTTAGGAGTTAAAATCGAAGGAATCACTAAA
TTTCAGCTCCTAAAATTCCAGATTGTAAGCTAAAATAGATTTGTAAATAT
GAAACGTTTTCCAAAACTAAAAATTTCGTAACTGAGAAAAAATACCGTGC
AAACATACCCTTATAAAGAGATTTCTATCCACGCATCAGATTTTGAGAAA
CTGTTTTTACGACCATTAATCACTTTTAACAAAGAAAATCTCAATAGATG
ACGACGTAGCCAAAGTGAGATATTATTCTATCTGATAACAGTTCACTGTT
TTATCCATCTATATTTAGTAATTTAGGCTTAATAGGAAGGAAAAAAACCT
CTAAATTTCTGTTCATCTTTTTTTAGTTCGATAGTAACAACCGACCACTT
TCAAGTGCTTTTTACACTGGTAAACCAAAGTTTTACGATTTGACGTACCA
AGTATGGGAGTTGAAGGAAAAATTAGACACCAATACCGCCATTACGGCTG
AAGACTCCCCTGCGCCGTCCAATGAAGATAAAGTGATGCAATGGATGAAA
CAATATCAACTGGAGCAAAAATTAAACGAGAAACTAAATGAAAAATTATA
TGATATGATANATTACGGCTGAAGACTCTCCTGCGCCGTCCAATGAAGAT
AAAGTGATGCAATGGATGAAACAATATCAACTGGAGCAAAAATTAAACGA
GAAACTAAATGAAAAATTATATGATATGATAATGTTTCGGTTGAAAAAGT
TATCGCAACATGAACGAGCTAATGAGATTAAAGGTTTCTTGCAACAATAC
CAGGTGCCCACGAGTTCAGGAAGTACTGAGCAGTTGAAAGATGTGGAGAT
TTACGACGGAGTTGCGCGTGCTATGGGTTACCGTAAGACGTCTATCGCCG
AAGTTATCGTTCGTCCCGGAGAGGGTCACATTATGGTCAACGATAAGAAA
TTCTTGGATTATTTTTATTTGAGAAACGACCGCGAGCAAATTATGTATCC
TCTTTTATTGACTGAGTCTTTAAGCAAATTCAACATCGAAGCGAACGCAA
TCGGAGGCGGTTCGACTGGAAAATCTGGTGCTATCCGCTTAGGGATAAGT
CGGGCGATCGCTGCGTTATGCCCAGAACATTTCGATGTGCTGAATCAGCA
TCAGTTATTGACTAGAGACTATCGGCAGAAAGAACGTAAGAAGCCAGGTC
GAAAGAAGGCTCGACGTGCTTTCCAATGGGTCAAACGTTGAAAAGGATGA
CTCTTCCATTGTAAACGCAACCTTTTCAATATAATCAGTGTAAAAGAAAA
AGAGATTTATTTTCCCATAACATTTTTTTCTGCATTCTTTGGTTGATCTT
TTTGAAGCTTTTCAACCTGATCGAATTTCTCATTGAAACAGAGCCGCTGA
CTTACTTTAGTGGGATATATTTTCGCGGGGATTAAATTTCGCAGATCTCG
CGGATTTGGGTGTCATTAAGTCTAATGGAAATTTGGAAAGGCCTTATCCA
CGAAATATTACTAAAAAGCTCAAAAAATGTTAAATAAATATATTTTGAAT
GTTTGCTAAGGCGCTGATAATGCCTATT Coding sequence (CDS) from alignment at scaffold_350:185809..189136- >TCONS_00060976 ID=TCONS_00060976|Name=TCONS_00060976|organism=Clytia hemisphaerica|type=CDS|length=2568bp|location=Sequence derived from alignment at scaffold_350:185809..189136- (Clytia hemisphaerica)
AATATCAACTGGAGCAAAAATTAAACGAGAAACTAAATGATTCGATAGTA
ACAACCGACCACTTTCAAGTGCTTTTTACACTGGTAAACCAAAGTTTTAC
GATTTGACGTACCAAGTATGGGAGTTGAAGGAAAAATTAGACACCAATAC
CGCCATTACGGCTGAAGACTCCCCTGCGCCGTCCAATGAAGATAAAGTGA
TGCAATGGATGAAACAATATCAACTGGAGCAAAAATTAAACGAGAAACTA
AATGAAAAGTAAAAGATGGTTGGCACGAATGATGGGTCAAGATCCGGAAA
ATTTTTCACAGAAGGATGTGGATGAAGCTATTGCATATTTGTTGCCAAGC
AGTTTGTTTGCCAAAGATGCACGACCTGTCATGAAACACCCTTATGAACT
CTTCCCCAAAACTAAAGAATCATTGATTTATCTGTTTCTTTCATTCAGAT
ATAATAAAATGAATATATGCAATAATTACATACCAAAGCGACTTTTCCGA
TTGGCTGATGTGACTAGACGTCTGGTGACGAGTGCCCGTTTTGCAGCGGC
CAATCAACAAGTAGAACGAGTACAGGAAGAACGAAATGAACTGGAAGAAA
GTGACCCGTTTCTGAAAAATGAAATCAAGAAATATAATACAGAATATCAA
CTGGAGCAAAAATTAAACGAGAAACTAAATGATTCGATAGTAACAACCGA
CCACTTTCAAGTGCTTTTTACACTGGTAAACCAAAGTTTTACGATTTGAC
GTACCAAGTATGGGAGTTGAAGGAAAAATTAGACACCAATACCGCCATTA
CGGCTGAAGACTCCCCTGCGCCGTCCAATGAAGATAAAGTGATGCAATGG
ATGAAACAATATCAACTGGAGCAAAAATTAAACGAGAAACTAAATGAAAA
GTAAAAGATGGTTGGCACGAATGATGGGTCAAGATCCGGAAAATTTTTCA
CAGAAGGATGTGGATGAAGCTATTGCATATTTGTTGCCAAGCAGTTTGTT
TGCCAAAGATGCACGACCTGTCATGAAACACCCTTATGAACTCTTCCCCA
AAACTAAAGAATCATTGATTTATCTGTTTCTTTCATTCAGATATAATAAA
ATGAATATATGCAATAATTACATACCAAAGCGACTTTTCCGATTGGCTGA
TGTGACTAGACGTCTGGTGACGAGTGCCCGTTTTGCAGCGGCCAATCAAC
AAGTAGAACGAGTACAGGAAGAACGAAATGAACTGGAAGAAAGTGACCCG
TTTCTGAAAAATGAAATCAAGAAATATAATACAGAATATCAACTGGAGCA
AAAATTAAACGAGAAACTAAATGATTCGATAGTAACAACCGACCACTTTC
AAGTGCTTTTTACACTGGTAAACCAAAGTTTTACGATTTGACGTACCAAG
TATGGGAGTTGAAGGAAAAATTAGACACCAATACCGCCATTACGGCTGAA
GACTCCCCTGCGCCGTCCAATGAAGATAAAGTGATGCAATGGATGAAACA
ATATCAACTGGAGCAAAAATTAAACGAGAAACTAAATGAAAAGTAAAAGA
TGGTTGGCACGAATGATGGGTCAAGATCCGGAAAATTTTTCACAGAAGGA
TGTGGATGAAGCTATTGCATATTTGTTGCCAAGCAGTTTGTTTGCCAAAG
ATGCACGACCTGTCATGAAACACCCTTATGAACTCTTCCCCAAAACTAAA
GAATCATTGATTTATCTGTTTCTTTCATTCAGATATAATAAAATGAATAT
ATGCAATAATTACATACCAAAGCGACTTTTCCGATTGGCTGATGTGACTA
GACGTCTGGTGACGAGTGCCCGTTTTGCAGCGGCCAATCAACAAGTAGAA
CGAGTACAGGAAGAACGAAATGAACTGGAAGAAAGTGACCCGTTTCTGAA
AAATGAAATCAAGAAATATAATACAGAATATCAACTGGAGCAAAAATTAA
ACGAGAAACTAAATGATTCGATAGTAACAACCGACCACTTTCAAGTGCTT
TTTACACTGGTAAACCAAAGTTTTACGATTTGACGTACCAAGTATGGGAG
TTGAAGGAAAAATTAGACACCAATACCGCCATTACGGCTGAAGACTCCCC
TGCGCCGTCCAATGAAGATAAAGTGATGCAATGGATGAAACAATATCAAC
TGGAGCAAAAATTAAACGAGAAACTAAATGAAAAGTAAAAGATGGTTGGC
ACGAATGATGGGTCAAGATCCGGAAAATTTTTCACAGAAGGATGTGGATG
AAGCTATTGCATATTTGTTGCCAAGCAGTTTGTTTGCCAAAGATGCACGA
CCTGTCATGAAACACCCTTATGAACTCTTCCCCAAAACTAAAGAATCATT
GATTTATCTGTTTCTTTCATTCAGATATAATAAAATGAATATATGCAATA
ATTACATACCAAAGCGACTTTTCCGATTGGCTGATGTGACTAGACGTCTG
GTGACGAGTGCCCGTTTTGCAGCGGCCAATCAACAAGTAGAACGAGTACA
GGAAGAACGAAATGAACTGGAAGAAAGTGACCCGTTTCTGAAAAATGAAA
TCAAGAAATATAATACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060976-exon-scaffold_350-1575043694:188919..189136 | TCONS_00060976-exon-scaffold_350-1575043694:188919..189136 | Clytia hemisphaerica | exon |
| TCONS_00060976-exon-scaffold_350-1575043694:188078..188244 | TCONS_00060976-exon-scaffold_350-1575043694:188078..188244 | Clytia hemisphaerica | exon |
| TCONS_00060976-exon-scaffold_350-1575043694:186793..187010 | TCONS_00060976-exon-scaffold_350-1575043694:186793..187010 | Clytia hemisphaerica | exon |
| TCONS_00060976-exon-scaffold_350-1575043694:185809..186714 | TCONS_00060976-exon-scaffold_350-1575043694:185809..186714 | Clytia hemisphaerica | exon |
| TCONS_00060976-exon-scaffold_350-1510915933:188919..189136 | TCONS_00060976-exon-scaffold_350-1510915933:188919..189136 | Clytia hemisphaerica | exon |
| TCONS_00060976-exon-scaffold_350-1510915933:188078..188244 | TCONS_00060976-exon-scaffold_350-1510915933:188078..188244 | Clytia hemisphaerica | exon |
| TCONS_00060976-exon-scaffold_350-1510915933:186793..187010 | TCONS_00060976-exon-scaffold_350-1510915933:186793..187010 | Clytia hemisphaerica | exon |
| TCONS_00060976-exon-scaffold_350-1510915933:185809..186714 | TCONS_00060976-exon-scaffold_350-1510915933:185809..186714 | Clytia hemisphaerica | exon |
| TCONS_00060976-exon-scaffold_350-1491911889:188919..189136 | TCONS_00060976-exon-scaffold_350-1491911889:188919..189136 | Clytia hemisphaerica | exon |
| TCONS_00060976-exon-scaffold_350-1491911889:188078..188244 | TCONS_00060976-exon-scaffold_350-1491911889:188078..188244 | Clytia hemisphaerica | exon |
| TCONS_00060976-exon-scaffold_350-1491911889:186793..187010 | TCONS_00060976-exon-scaffold_350-1491911889:186793..187010 | Clytia hemisphaerica | exon |
| TCONS_00060976-exon-scaffold_350-1491911889:185809..186714 | TCONS_00060976-exon-scaffold_350-1491911889:185809..186714 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_350 | supercontig | scaffold_350:185809..189136 - |
Blast
BLAST of TCONS_00060976 vs. Swiss-Prot (Human)
Match: RT09 (28S ribosomal protein S9, mitochondrial OS=Homo sapiens GN=MRPS9 PE=1 SV=2) HSP 1 Score: 122.094 bits (305), Expect = 2.310e-30 Identity = 60/146 (41.10%), Postives = 92/146 (63.01%), Query Frame = 2
Query: 176 SDPFLKNEIKKYNTGKRWLARMMGQDPENFSQKDVDEAIAYLLPSSLFAKDARPVMKHPYELFPKTKESLFDSNNRPLSSAFYTGKPKFYDLTYQVWELKEKLDTNTAITAEDSPAPS---NEDKV-MQWMKQYQLEQKLNEKLNE 601
++ F+K +I+++N GKR LA MMG+DPE F+Q+D+D AIAYL PS LF K ARPVMKHP ++FP+ + + + RP FYTGK +Y L + V+ + L+ + + S P D + +W+ + +LE+ L EKL++
Sbjct: 70 TEDFIKKQIEEFNIGKRHLANMMGEDPETFTQEDIDRAIAYLFPSGLFEKRARPVMKHPEQIFPRQRAIQWGEDGRPFHYLFYTGKQSYYSLMHDVYGMLLNLEKHQSHLQAKSLLPEKTVTRDVIGSRWLIKEELEEMLVEKLSD 215 HSP 2 Score: 85.8853 bits (211), Expect = 5.988e-18 Identity = 70/195 (35.90%), Postives = 110/195 (56.41%), Query Frame = 3
Query: 603 KYQLEQKLNEKLNEKLYDMIMFRLKKLSQHERANEIKGFLQQYQVPTSSGSTEQLKDVEIYD----GVARAMGYRKTSIAEVIV-RPGEGHIMVNDKKFLDYFYLRNDREQIMYPLLLTESLSKFNIEANAIGGGSTGKSGAIRLGISRAIAALCPE-HFDVLNQHQLLTRDYXXXXXXXXXXXXXXXAFQWVKR 1169
K +LE+ L EKL++ Y + L+KL + + F+Q+++ + S +QL + YD +++ G RKT+ AE IV + G G I VN + YF + DREQ+M+P + L K ++ GGG + ++GAIRL +++A+ + E + + Q LLT D R +ERKKPG++ ARR F W KR
Sbjct: 202 KEELEEMLVEKLSDLDYMQFIRLLEKLLTSQCGAAEEEFVQRFRRSVTLESKKQLIEPVQYDEQGMAFSKSEGKRKTAKAEAIVYKHGSGRIKVNGIDYQLYFPITQDREQLMFPFHFVDRLGKHDVTCTVSGGGRSAQAGAIRLAMAKALCSFVTEDEVEWMRQAGLLTTDPRVRERKKPGQEGARRKFTWKKR 396
The following BLAST results are available for this feature:
|
