TCONS_00060986 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060986
Unique NameTCONS_00060986
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length348

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060986 ID=TCONS_00060986|Name=TCONS_00060986|organism=Clytia hemisphaerica|type=transcript|length=348bp
GCTAACTATCAAGTAATTAGAAAATATCTATAAAAAGTgcttaaaacatt
aaaatatagGATATTATAAATTATGCACAAAATATTTACCATATAAAACA
ATATTCTGTGTTCATACTTTTCTCACTCCTTCCACGTGTTTtcgaaattt
gtttattttcaaagcTTCGGCTACCATTTTATGTTCAACTGTCCCGGAAC
ATGTGGTATCCGGAGATTTGATTATAATCGGCCTGACAGTCAaggaccat
tgagtttcaagccgaaggctagaggtcaatctctttggtaggatttgaag
ccaacaaatcctaccaaagttgcgcggccttgagcgacccgcctggta
Run BLAST on NCBI

transcript from alignment at scaffold_350:156928..157275

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060986 ID=TCONS_00060986|Name=TCONS_00060986|organism=Clytia hemisphaerica|type=transcript|length=348bp|location=Sequence derived from alignment at scaffold_350:156928..157275 (Clytia hemisphaerica)
taccaggcgggtcgctcaaggccgcgcaactttggtaggatttgttggct
tcaaatcctaccaaagagattgacctctagccttcggcttgaaactcaat
ggtcctTGACTGTCAGGCCGATTATAATCAAATCTCCGGATACCACATGT
TCCGGGACAGTTGAACATAAAATGGTAGCCGAAgctttgaaaataaacaa
atttcgaAAACACGTGGAAGGAGTGAGAAAAGTATGAACACAGAATATTG
TTTTATATGGTAAATATTTTGTGCATAATTTATAATATCctatattttaa
tgttttaagcACTTTTTATAGATATTTTCTAATTACTTGATAGTTAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038286XLOC_038286Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060986-exon-scaffold_350-1491911889:156928..157275TCONS_00060986-exon-scaffold_350-1491911889:156928..157275Clytia hemisphaericaexon
TCONS_00060986-exon-scaffold_350-1510915933:156928..157275TCONS_00060986-exon-scaffold_350-1510915933:156928..157275Clytia hemisphaericaexon
TCONS_00060986-exon-scaffold_350-1575043694:156928..157275TCONS_00060986-exon-scaffold_350-1575043694:156928..157275Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_350supercontigscaffold_350:156928..157275 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.777039	0.252097	0.292457	0.864804	0.705508	0	0.333755	0.939439	0	0	0.782304	0.684381	0.682274	0.177002	0.291052	0.780313	0.961844	1.18109	0.27335	0	5.51899	3.65673	0.59539	1.62816	3.3447	0.24899	0	0.77411	0	0.292533
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060986 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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