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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061019 ID=TCONS_00061019|Name=TCONS_00061019|organism=Clytia hemisphaerica|type=transcript|length=2112bp
ACTCAGTCAGACTCAAATATTAGAGGAGATGATTTTAGTTGATAGTTCTT
AGATGTCTTGGTGATACATCTaatattttctacatttttaaTGGTTTCAA
GGTACAAATTCACTCTGATCTCCAAACCCATTTTACAATGGtttcttctt
tcaatttttttgtatagTTTCTTTTCCTCAACAAGAGAAAAAAACCTTAT
TCAATTCTATTATAGGGATGCAAGAGGATTGTTGAGATTGATGCAAGAGg
agttgttttttttagaatagagtgctttcttttttatggattctttgttt
tgatcttttctcTGACTTCCTGTACAATGTGAGATTGAAGTCAGAAAGCT
GATGTTTATAGAACTCAAAGAACTAGCGCTTTTTCATAAAATACACTGTT
TTacactttttcataatttttttatccAGACTCTCTTACTGTTATATAAT
AAGTCAAAGTGAAGACAGAACATATTTTTGTGACTTtgtctcttttttat
ttttattattttttgactCGCCATATAAAACTCGTCCCTTTCCGTAACTt
gccaaaaaaggtaaaatcgGCCACCATAAGAGCCACCATAGCGGGAAGGC
AAGCCGTACACTATTAAGCAAACCTATATAGgagatatatctatagaggt
ttgTGAATCAAACTATAAAGATGGCGAGTGAAGCCGTAGGGGTGAAGCGA
AGGATGGAATGGATGGAATTGGATAAAAATCTGACAATTTTGCGACTTTC
CAAatcaaaagatttggaaaagtaagaaaaactaTGTTGAAAAACTGTGC
TGCCACAATATTGAAAACGCAACAATATGGCGGAAATCAACGAAAATTAT
GGATATTGCACACCCAATAACACTGTTTAACAAAAACCATCATAGCAGAT
AATGACACCTTACAATGTATGAGATCGTGATAGACTTGTCCATTATGCTT
GTTCTGAGCTCTCGGCCTATCAGATACATTCAGCTTTGTCTGCAATATAA
AAGCCAGCGCTTCGAATGTGGAAATTGTGTTACAATAACGCCACTCTTAT
TTGagaagattaaaacaagcaGACAAGAAGCTTGCAGTAACATCACAACG
AAAGAAGCAGATACAGTAAAGATGAACATCATGGATTGAACCTAGCATTC
TTAggtaggttaggatcctaattctgACTAGATTTACCATTTTGTCATTT
GTTGTaccataaaatggcatttttgtgaaaggagtgagcccttttccaga
cggtactaatcgataaattcACTTATCGCTAatcgataaattcgattatc
gaTGTAATCGATAATGATTGAAGTAATCGAACGACCATTTATCGATTAAC
AATTAAATTTCGAGtaacgaaatttcaaaaaaattgcaaaggcagcaatc
aaaaatatgttccgtttgggtcctaaaacatcttcaaatccagtcgggcg
gtcggtcggtagtaaattttgttggatttttaagatctagtaaatcccaa
tgaatcaagtcggcaatcaacagatcttatgccgccatctttaatttgcc
aaactaaatgtgCGTGCGCATGTGTTAACCTTAAAGCAGCCCTTATTTTC
GGCCCCCAgggtattggccctaccgcCTTGTCGacttttgacatgaaaat
ttcaataagggtacatgaaataacttgaacgggactcaatgtgaattaag
taaacaaaaaataatgattcaaagacaTGCTCCGTTCGCCCATGCCCGCC
ATTATGGGAAAGATCCGAACCTGCGAACAGCGCCCAAAAATAATGCAACA
TATTTTTGATCGCCGCCAAATTACGTGAGTCTtcaatcactttcttaaca
acccgAAGACTCGATAACCGttcgagtactttgattgttattgattactt
tcgataacttcGATAACCATTGATTTCTTCGATAACCAGTTGATTACATA
GATATATACCTTGGTAGTTAGgcgttagtcacactaggaaatcaagcttt
cagaaaaacaacatcagtcatctacaggatgtatttgcaacaacaaggat
gagagttacctgaatcaagttcgcaagacaattaattaaaacttgaaagt
ttgaaacaaaat Run BLAST on NCBI transcript from alignment at scaffold_352:72068..74179 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061019 ID=TCONS_00061019|Name=TCONS_00061019|organism=Clytia hemisphaerica|type=transcript|length=2112bp|location=Sequence derived from alignment at scaffold_352:72068..74179 (Clytia hemisphaerica)
attttgtttcaaactttcaagttttaattaattgtcttgcgaacttgatt
caggtaactctcatccttgttgttgcaaatacatcctgtagatgactgat
gttgtttttctgaaagcttgatttcctagtgtgactaacgcCTAACTACC
AAGGTATATATCTATGTAATCAACTGGTTATCGAAGAAATCAATGGTTAT
CgaagttatcgaaagtaatcaataacaatcaaagtactcgaaCGGTTATC
GAGTCTTcgggttgttaagaaagtgattgaAGACTCACGTAATTTGGCGG
CGATCAAAAATATGTTGCATTATTTTTGGGCGCTGTTCGCAGGTTCGGAT
CTTTCCCATAATGGCGGGCATGGGCGAACGGAGCAtgtctttgaatcatt
attttttgtttacttaattcacattgagtcccgttcaagttatttcatgt
acccttattgaaattttcatgtcaaaagtCGACAAGgcggtagggccaat
acccTGGGGGCCGAAAATAAGGGCTGCTTTAAGGTTAACACATGCGCACG
cacatttagtttggcaaattaaagatggcggcataagatctgttgattgc
cgacttgattcattgggatttactagatcttaaaaatccaacaaaattta
ctaccgaccgaccgcccgactggatttgaagatgttttaggacccaaacg
gaacatatttttgattgctgcctttgcaatttttttgaaatttcgttaCT
CGAAATTTAATTGTTAATCGATAAATGGTCGTTCGATTACTTCAATCATT
ATCGATTACAtcgataatcgaatttatcgatTAGCGATAAGTgaatttat
cgattagtaccgtctggaaaagggctcactcctttcacaaaaatgccatt
ttatggtACAACAAATGACAAAATGGTAAATCTAGTcagaattaggatcc
taacctaccTAAGAATGCTAGGTTCAATCCATGATGTTCATCTTTACTGT
ATCTGCTTCTTTCGTTGTGATGTTACTGCAAGCTTCTTGTCtgcttgttt
taatcttctCAAATAAGAGTGGCGTTATTGTAACACAATTTCCACATTCG
AAGCGCTGGCTTTTATATTGCAGACAAAGCTGAATGTATCTGATAGGCCG
AGAGCTCAGAACAAGCATAATGGACAAGTCTATCACGATCTCATACATTG
TAAGGTGTCATTATCTGCTATGATGGTTTTTGTTAAACAGTGTTATTGGG
TGTGCAATATCCATAATTTTCGTTGATTTCCGCCATATTGTTGCGTTTTC
AATATTGTGGCAGCACAGTTTTTCAACAtagtttttcttacttttccaaa
tcttttgatTTGGAAAGTCGCAAAATTGTCAGATTTTTATCCAATTCCAT
CCATTCCATCCTTCGCTTCACCCCTACGGCTTCACTCGCCATCTTTATAG
TTTGATTCAcaaacctctatagatatatctcCTATATAGGTTTGCTTAAT
AGTGTACGGCTTGCCTTCCCGCTATGGTGGCTCTTATGGTGGCcgatttt
accttttttggcaAGTTACGGAAAGGGACGAGTTTTATATGGCGagtcaa
aaaataataaaaataaaaaagagacaAAGTCACAAAAATATGTTCTGTCT
TCACTTTGACTTATTATATAACAGTAAGAGAGTCTggataaaaaaattat
gaaaaagtgtAAAACAGTGTATTTTATGAAAAAGCGCTAGTTCTTTGAGT
TCTATAAACATCAGCTTTCTGACTTCAATCTCACATTGTACAGGAAGTCA
gagaaaagatcaaaacaaagaatccataaaaaagaaagcactctattcta
aaaaaaacaactcCTCTTGCATCAATCTCAACAATCCTCTTGCATCCCTA
TAATAGAATTGAATAAGGTTTTTTTCTCTTGTTGAGGAAAAGAAActata
caaaaaaattgaaagaagaaaCCATTGTAAAATGGGTTTGGAGATCAGAG
TGAATTTGTACCTTGAAACCAttaaaaatgtagaaaatattAGATGTATC
ACCAAGACATCTAAGAACTATCAACTAAAATCATCTCCTCTAATATTTGA
GTCTGACTGAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061019-exon-scaffold_352-1491911889:72068..74179 | TCONS_00061019-exon-scaffold_352-1491911889:72068..74179 | Clytia hemisphaerica | exon |
| TCONS_00061019-exon-scaffold_352-1510915933:72068..74179 | TCONS_00061019-exon-scaffold_352-1510915933:72068..74179 | Clytia hemisphaerica | exon |
| TCONS_00061019-exon-scaffold_352-1575043694:72068..74179 | TCONS_00061019-exon-scaffold_352-1575043694:72068..74179 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_352 | supercontig | scaffold_352:72068..74179 . |
Blast
The following BLAST results are available for this feature:
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