TCONS_00061029 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061029
Unique NameTCONS_00061029
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length702

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061029 ID=TCONS_00061029|Name=TCONS_00061029|organism=Clytia hemisphaerica|type=transcript|length=702bp
AAAATATCGCTTTCACGATTCCGTATAATGGCGGAATAATTCCTTCCACT
TTCTTTTTAGTAGTTGGGTCAATTTTGTACGAAAAAGGAGCAACCATGTC
TCTCGTACTTCCCGAAAAGTTCCAACACATCCTTCGTGTTATGAACACGA
ATATCGATGGCAAAACCAAAATTATGTATGCCATGACAAGCATCAAAGGT
GTTGGTCGACGTTTCTCAAATATCTGCTTGAAGAAAGCTGATATTGACAT
GAACAAGAGAGCTGGAGAATTATCCGATGAAGAGGTTGAAAGACTCATCA
CCATTATGCAGAACCCACGTCAATACAAAATCCCAGATTATTTCTTGAAC
AGAAAGAAGGATATCAAAGATGGAAAATACTCTCAAGTATTGGCTAATGG
ATTGGACAACAAACTTCGTGAGGATCTTGAACGATTGAAGAAAATTCGTG
CCCACAGAGGTTTAAGACATTACTGGGGtctCCGTGTCCGTGGTCAACAC
ACAAAAACAACTGGACGTAAAGGAAGAACTGTTGGTGTATCCaagaaaaa
gaattaatttctttttgcaatataaaaaaatcgaaaaaaaatcacaaatg
tctctttttttgtgttttagaCAGTCAAGAACACCATCAAATTATACCAC
AAAATATCAATTGCTGACGGGATAACAACAGTCGCGCTTTCTTTAAataa
ta
Run BLAST on NCBI

protein sequence of TCONS_00061029-protein

>TCONS_00061029-protein ID=TCONS_00061029-protein|Name=TCONS_00061029-protein|organism=Clytia hemisphaerica|type=polypeptide|length=184bp
NIAFTIPYNGGIIPSTFFLVVGSILYEKGATMSLVLPEKFQHILRVMNTN
IDGKTKIMYAMTSIKGVGRRFSNICLKKADIDMNKRAGELSDEEVERLIT
IMQNPRQYKIPDYFLNRKKDIKDGKYSQVLANGLDNKLREDLERLKKIRA
HRGLRHYWGLRVRGQHTKTTGRKGRTVGVSKKKN
Run BLAST on NCBI

transcript from alignment at scaffold_353:22744..32810-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061029 ID=TCONS_00061029|Name=TCONS_00061029|organism=Clytia hemisphaerica|type=transcript|length=10067bp|location=Sequence derived from alignment at scaffold_353:22744..32810- (Clytia hemisphaerica)
AAAATATCGCTTTCACGATTCCGTATAATGGCGGAATAATTCCTTCCACT
TTCTTTTTAGTAGTTGGGTCAATTTTGTACGAAAAAGGAGCAACCATGGT
TAGTTTTATTCTAAGTTTATCCACTCCATCAGCGAATACTGTACTTCTTA
ACCTATCCACAAATTGAGAGCTATCTTTCTTCTATATCAGAGTCACACAA
TTTTTGGGCGAAACTTTCTAGACCTACTTGATATTTTAATGTTTCGTACC
ATACTATTCCATTTCAGTCTCTCGTACTTCCCGAAAAGTTCCAACACATC
CTTCGTGTTATGAACACGAATATCGATGGCAAAACCAAAATTATGTATGC
CATGACAAGCATCAAAGGTGTTGGTCGACGTTTCTCAAATATCTGCTTGA
AGAAAGCTGATATTGACATGAACAAGAGAGCTGGAGAATTATCCGATGAA
GAGGTTGAAAGACTCATCACCATTATGCAGAACCCACGTCAATACAAAAT
CCCAGATTATTTCTTGAACAGAAAGAAGGATATCAAAGATGGAAAATACT
CTCAAGTAAGTATATTTAATGCAACCTTAATATCATGACTACAATTCTCA
TTGTTGACAGAGTTGGATGGCAATACGTATATGGAATATTATTATGCATT
TGTATACATTAAGCAGCAGTTAATGGTTAACTATTTGTTTGAGAAAGCAA
GAGTCACATAAAAATGGAGAAGCTGATAATCCCTTAGCTACAGAAACTGT
TTCAGAGCTGGTGAAATGATGTTTATGATGATTTCGTGGATGTGACTGAA
TTTATGATATGGACAAATTACATTATTATTTCTTTTTCCATGGAAAGATT
ATTCATTACCTAAGCTGTGTGGAAGTGGAAATAGAAATATTTGGAGAGTT
GTCTCAAGACAAAGTTACTTGATGTTGAAATTAAGCTTTGATCAATGAAT
AAATTTTGCGATCAAACTGGTTAGAAATGAGATGAGAAGTGTTATTCTTT
ACAGAGATTTCATCTGGCATGTGAATGATTGTGGCATTTTATCTGTGTCC
CTTGGAAAGTTGAATTATGCAAATTCCATATTGATATTGTTTGTCAGATA
TTTTATTTTACATGAATCCCAACTATGGAATGCTTTGTTTGGGGAATTAT
TATGTGCATACCTTTCTACTTTACAGAACACAGTCAAAAATAAAGGGGGG
TTTTGTGACATTTCTACCTTCTGTCATATCTGATACCATATCTGGTGGAA
TTTTGAGGTTACCATATCAAAACTNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNTTTAAGAGGTTACTTCAATCCTGAGTAATACTTA
GAAATATGATGTGGTTAAAGTGAGGTTACCCCTATGAGGTTACCTCATTC
TAAAGCTTATAAGGGGTCTTCGACAAAAAACTTTCGAATTTTTTATCGGC
ATTGGGCCGATAAGCTTCAGACCCCCTCCCCCCCTTGCTCTTATCGGCCT
AAATTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTACACCTGAAAGAATATGTGTC
CCCTTAATCCCGCTGTTGTTGAGAGAAAATCTTCAAAGACTCGGTTTCAG
GCATCAAAATTACTTTTGCCAGGGATATTATAGTTTCCAACATAACTCAA
TCTATCTATGAGTTCATTAATAAAGCTGGGGAAGTCAACAATTATTACCC
CCAAATATATTAGATTAAATCTAAAAACAAGACTGCAAGTCTGCAAGTGT
ATATTTGATTCCGCACGTCCATCTTTAAAGCAGAGAAACGCTGATTTTGG
GACTGCTGATTCCAGCTAAACCCCTTGTTTAGACAGCACTAGAATTTAGG
TACCTTATCAGCTACAAAATGAAACCCTCTCTGTTAGCTATCCAAGGATA
TTGGAATCAAAAAATGACGTCTTTCAAAATAATACAGACTAGTTCTAGAA
ATAATTGCACGCCTAATCTGCACCTTTCTACAATTTTTATTTTTTTAAAG
CATCATAATAATACTAGGCTCAGATTTGGAAAGAATTTAAGCAAATGCTA
AGCATTTTCAGAGACTACATTTTGTGGATTTGGCTGGAATTTTACAGATG
GTTCAATGGTACAATTTTCAGCACTTAGTTTTCATGCTTTAAGTTCAACA
GTGACAAATTACCTAACAATCATCTTTTTATATCTTTTTTATTCTTATCA
ATGACACAGCCAATGATGATTCCTTTTAAACCATCTTTCGTTTGAAATGA
TAATGTAACCATTTATAATCTGAGGTTGTGTAAATTTCTTTATAATTTGT
AAGGGAATCGAGGTCCTTTCTTTTTAATACTGGTATTCTGCTTTAAAATT
CTGAATTGGATTTCGTTTCTTTCCCTTCAGGTATTGGCTAATGGATTGGA
CAACAAACTTCGTGAGGATCTTGAACGATTGAAGAAAATTCGTGCCCACA
GAGGTTTAAGACATTACTGGGGGTGAGTTTGACATTTTAAAACATACATA
AGGCTAGCTTTGTCAGAAGCTTGTGCAAAAGGATTTTATTTACAATGATT
GTTCCTTGGGTGTTGAAAATTTATAAAAGAGGAGTAGCCTGGTGTGACAA
TCTGTCGCCATGGCTATTGGTCAATGGTCTAAATAGTATGAAAAGCTGAT
CAAAACAGGGGGGGGTCAACATCCAGATACCAGACCCATAGCCGGGTGGT
GGTGTCTTTTTTTCCTTTAAAAGTCTGAAAAGTCAAGTTGGTATTGATGG
GGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAAAGTTGGTATCCAT
ATCAAAATGACAGCAAAACTTTCCTAATTTTTGCCCTTATAGCTAGAAAA
TACCACGGGGTACATATCAGTCTAAACAGGTTTCAATTGGATTTGTTTTA
GCTTTTGAGTATAGTGACTGTAAATGAGTAATAAGTATAAATGACTTTGA
AGTTTGTTTATTTTGGACTTTTTTGATATTTTCAAGTTTTATTTTTGATC
AAGTCTGAAGCAAAAACATTTTTTCTGTGATAGCATTTGGTAATGAGTGA
ATCTATTCTGTTCTAAAATTATGTACTAATAATAGCTTCTCCTAGTTTTT
GCACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNATTTCAAAAATGAGTTTTTTTGAAGTTTCTCTTAG
TACCCTGTTTGTGTGGGAGGGGGTGGGTTCCCTTTAAACAGCTTTAAACT
CAAATTTGTCAGATTGATATTGGTACTAAATTAGGGGGGTGGGTCCCATG
ATATTTTGTCAAATTCAAAAAGTCATATTGGTATCGATACCAAATTAAGG
GGGTGGGTCCCCCTTTTTTCTGAAAATTATGATTTTCAAGTTGGTATCGA
TACCAAAATAAGGGGGTGGGTCCCCCCTTTTTCTGAAAATTATGATTTTC
AAGTTGGTATCGATACCAAAATAAGGGGGTGGGTCCCCCCTTTTTCTGAA
AATTATGATTTTCAAGTTGGTATCGATACCAATTTTGGGGTGGTGGTGTT
AACTTAGCTCAAAAGGTCAAAAGTCAGGTTTTTGGGCTATGGGTTGGTAT
TATAAATGTTGACCCCCCCCTGATCAAAAAAGAAGTAAAAGCATACTAGC
CGTCCCAGCGTCATCTGAGACAACTTTTCTCCTTGAGCTTTGCTTGCAGT
CATTCTTGATGAATTAGATGTATTTTTACTTTTGTGAGAAATGAGTAAGC
AACATTTCTTTTGACTGTTCAGTTATGACTAAGTTTATATTCTCAATTAT
AATCAATAAGCATTCCATGCAACAGGTCGAAAGCCACAGACCAGAAATCA
TCTAGTTAGCAAATTATGAAATCATAAAAGTGCGAATTACACGTTTTTTT
TTTATAAGAACGTCAAAAATTTTCGAAGTCTTCGGATGTTCTTAGTTTTT
TGGATTTGAAGCCTAACAAGAGCCGCAAAGATGCGGATAAATATTTCCTT
TACAAATGTTAAAATAATAATTGATGTCCTAAAAAGATTTCAAAGTGCTT
TAAATCTCAGATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATTTCAC
AGTAAGAAAACCAAAGAAAATTTTATATATTTTCAAAATGAGATGAAATA
TTTTGCATTATACTTTCATATAAAATATTGTAAAAAATGTAAAAGTAACT
TTCGGAGTTTTTTGAAATAATGTACGTGCTAAAAAGTAAAAATCTTTCAA
AACAGGGAAAACAATTTCATGTTTTCCACGTTTTGAATGCACGTGTAACA
AAATCTCCAAATTTATCACAAAAGTTTCCACGTTTTATTAAATGTACATA
CAGTACATACCGCCAACTGCTTTAACTTGGGACGATTGGTCGAAACATGG
GANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNACTGTTTGATATCTGGTCTGTA
TTTTCACTAACTTGTTAAATCTCTTTGACAACAAATTTGTTTTGATAACT
CCACCAAATTTATCAATCATACTTCCTTTCATAACATGTCACGATAACTT
TCACTGATAGCGCCGATTGGAAAATTAGAGAACGCCCGCTGCCTAACCGC
CTATCGCCTGATGGGATTAACAAAATAACGCGTGTGTAACTTGCCGCGCT
CCATCGTTTTGCCATTTTTTAATACGCCGTTCATTAACTCAAATCAAATG
ACTTTGGAGGTTTCGGTGAAATGGTGGCCAAATTGCCGTCCCATGTTTTG
TCAGTTAGTCCCAAGTTAGAGCAGTTGACGGTAAGAAAATCTCCAAATTC
ACGACAAAAGTTTCCACGTTTAAAACACAAGTTGCAAAAGATCTCTAAAT
TCACAANNNNCAACTACGCAGCTCCGCTCGCAGCTCTACTCTACCATTTT
TGTATTTTAATGACCAGCTGGGTCTTTCATTTGAGAGCTATGCATGCTAG
CCTCCAATGATGCAAGTTACCCTTTTTCACGGTAAAGTTGTCCACGTTTT
AACAAAATGCAAGCAGAGAGAAAATCTCCAAGTTCAAGAAAAATTTTAAG
TGTACATGTGAGGTGATATCAAATTATTTACATCAATATTCAATGCAATA
AACCTTTTAAGGGGGCCGTGGTGTTCCGGATCCGGTATTATCAGCTTTAA
AATTTGAAATTTATAACCGCAACGAGTTTTCACTAACTGTCACTAACCCC
AGCAGTTAATCAGTTAATTCATTGTTGTAGATAAAAAATCCAAGGGAAAC
TCGATCAATAACCAGTCAATTTTGCTCCATTAGAGTTAAATTTTTAACTA
AAATCAGTTCATCAACCATTCCCATTGTTGCATTGTCGGCATTTGCATTC
GTTGGGTGCAAACTCATATTGCAAGTATGTAATTTTTCAGGTAGTCTATA
ACATGGTCAGATTCATTAACAGTCACTTGCCTTCGTACGATTTATGTAAA
TATACAAACAAAATTGAAGTTATTTTGTTGTGAAAGTTGATAAAATGTCC
TGTTTNAGTATGGTCCGATCAACAATACGCTTCTGAAACGGCCGACGTTG
CCCGATCGACAAGGAGAATAGAGGGCCGTACGGATATTTACCACAGACCT
TTCTCGAAGAAATGACGTCTTCCGCCTCAAAAAAAGAACATTCTACTGTT
TTTACCACCGGAGCTTGATTTAAAAAGAGACTCATGTACAAACTCACGAA
ATTGACCAAAACCGAGCGTTAGACTTGAAGAAGGAGAAGGAGAAAAATTA
CCGTTTTAACAAATATTTCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCT
TAAAATGTTCTTATTTTTAGCATTTTTTGAGCATTTTGATGTAATTTCTT
AAGAAAATGCATGTTTTTAAGTCTCCAAAGCCTTAAAATGTTCTTAGAAT
GTTCTTAAATTTTTGGGCCTCGAAGCCTTATGTTCTTATATAGTTTGTTC
TTATAAAAAAAAAACGTGTATGGCGTCACTCAGCTCCAACTTGATTTCTG
ACTTTCCTTTTTCAAGTTAGAGTTAAATAATTTTTTTTTTCACAAAAAGT
TCTTTGAGTTATTAACTCAGGCTTTTTGTAGAAAAAAAGTTTAAGAGTTT
GGTAACACCCTGAATTTTGATCTTTCTTTTACGGGCTGCATCGTTTGAGG
CGTGTGATAGCACGCGCACACCTCCACACACACCTAAAATCTTTGAGGAG
AGTGATTAATCACACGCCATAAATTTGGATTTTACTACTTAAAGTTATGC
ATAGCACTCCTTATCACACGCCTAAAGTACTTTTTAGGAGTAGTGCGATT
GACCACACGCCTGAAATTTTCAAATGACAAAGCCTGCTTTTACACTTAGG
GAAAATCAACAATGAAACCCATTGCAAAAGTTTAATGATTAAAGGATCCT
CACAAGTTTTAACCCAGTTACTATATTTGTCTCTCAAAACACATGTTAAT
TTCTAATTGAAAATTTGTTGACATGTTGGCTGTTCCTGTAAAAGCAGGTA
AAAGATGCTTTTCCCCAGAAACACTGCATTCCACCTGAGACATACCTTGT
GATGATTCTATTTTACCATCTTTCGTTTGAAATATTTATGTAACCAGAAT
TCTTTAACTGAAGGTAATGTCTCAGTCGGATTATAATAGGCTCCACTGAA
AAGTAACAAATTTCATGAAATTCATGCAAATTTGGAACAAAGCATCGAAT
ATGGACCAGACTTGCCTAATACCCTATGGATTGAGATTAAAAGGAATTGC
CTAGAATTTAAGGCATAGTCCCTATTTCTGGACATATAGTGCACAGCCTA
TAGGTCAAATGTTTAAGAAAATTTCAAACTCCTTTTAGGCCAAAACCAAT
CATAGTATCTAAAATCTTGCGCAAAAACTGTATAGGTACTGACTGAGAGT
TATTTGAGTGTCAATTCATGACCTTTTTATTATCAAAATAGAGAAAATCA
CCACTTAAACATCATTAAATAAATCCCTGCTCAGTACAGAAATTGGCGAT
ACTGCTTAATAATCTTCGATGTACTAATTTAAGACTAAGAGCTTTCAGAT
CCTATAATTGGTTTTGGCTTGAGATAGTTCGAAATTTCCACATAATTTGG
GCTCTTGGTATTTAGCCTAGGTCTTCAATAAATATGGAGTTAGAAAACAA
TTCTAGTTGAGAAGTTGCTAGTTGCTACTTTCGAGTTTCAGTTGGGAAGT
TGAATAATTACCGGCTACCGAAAAAGAATAAACATACATCAAAAGTACGA
TTTTGAAAAGTAAATGTAATATGAGAGTAATATATAACACCTATCATATG
CTCATTTCCCTTAAACACGTGGGCTGAGAGCATGAAAAGCCATTTCCACC
GTCAATTCAGATCCATTTATACTTCCTGCATCATATTGAGTATAAATATA
ATTCTTGTTGTATTTTTGTAATGTCATCAAAATTTTTATTAAAAAGTGTC
AATTCCAATGATAAAATGACAAAAGAAAGTGTTATTATTTTTCTAGTTCT
ATAAACCATCTCTACGAATTTTTTCGAGGCTAAAATGACCCTCAAATCAT
ATCCTTTTATACAATAAGCATCACTTGCAGTATCAATATTTTTTTGGGAA
TCTGTTTGACAATCGTTGTATTTAAAGGTTTTGTCAATATTTTACAAAAA
CGTGTCATGTTGTCAGCCAATGCCGATGGCTTCCCATATCAATCCACAGG
GTATTAGTCATGTCTGGTGTTTGTTTCAAATATGTACGATTTTTACCCTG
ACTGTAATCAGTAATTGTCATTAAGGTCGGTCAACTTGAGAATTTGAAAG
CTCTCAAGGTTTTCTTAGTTTTCCAGACTGATAAGTGTTCAAAGAAAATT
TGAGTTAGCTGATTGTGACACAATCTCTTTTTTTTATTTTTAGTCTCCGT
GTCCGTGGTCAACACACAAAAACAACTGGACGTAAAGGAAGAACTGTTGG
TGTATCCAAGAAAAAGAATTAATTTCTTTTTGCAATATAAAAAAATCGAA
AAAAAATCACAAATGTCTCTTTTTTTGTGTTTTAGACAGTCAAGAACACC
ATCAAATTATACCACAAAATATCAATTGCTGACGGGATAACAACAGTCGC
GCTTTCTTTAAATAATA

Coding sequence (CDS) from alignment at scaffold_353:22744..32810-

>TCONS_00061029 ID=TCONS_00061029|Name=TCONS_00061029|organism=Clytia hemisphaerica|type=CDS|length=2220bp|location=Sequence derived from alignment at scaffold_353:22744..32810- (Clytia hemisphaerica)
TCTCCGTGTCCGTGGTCAACACACAAAAACAACTGGACGTAAAGGAAGAA
CTGTTGGTGTATCCAAGAAAAAGAATTAAGTATTGGCTAATGGATTGGAC
AACAAACTTCGTGAGGATCTTGAACGATTGAAGAAAATTCGTGCCCACAG
AGGTTTAAGACATTACTGGGGTCTCTCGTACTTCCCGAAAAGTTCCAACA
CATCCTTCGTGTTATGAACACGAATATCGATGGCAAAACCAAAATTATGT
ATGCCATGACAAGCATCAAAGGTGTTGGTCGACGTTTCTCAAATATCTGC
TTGAAGAAAGCTGATATTGACATGAACAAGAGAGCTGGAGAATTATCCGA
TGAAGAGGTTGAAAGACTCATCACCATTATGCAGAACCCACGTCAATACA
AAATCCCAGATTATTTCTTGAACAGAAAGAAGGATATCAAAGATGGAAAA
TACTCTCAAAATATCGCTTTCACGATTCCGTATAATGGCGGAATAATTCC
TTCCACTTTCTTTTTAGTAGTTGGGTCAATTTTGTACGAAAAAGGAGCAA
CCATGTCTCCGTGTCCGTGGTCAACACACAAAAACAACTGGACGTAAAGG
AAGAACTGTTGGTGTATCCAAGAAAAAGAATTAAGTATTGGCTAATGGAT
TGGACAACAAACTTCGTGAGGATCTTGAACGATTGAAGAAAATTCGTGCC
CACAGAGGTTTAAGACATTACTGGGGTCTCTCGTACTTCCCGAAAAGTTC
CAACACATCCTTCGTGTTATGAACACGAATATCGATGGCAAAACCAAAAT
TATGTATGCCATGACAAGCATCAAAGGTGTTGGTCGACGTTTCTCAAATA
TCTGCTTGAAGAAAGCTGATATTGACATGAACAAGAGAGCTGGAGAATTA
TCCGATGAAGAGGTTGAAAGACTCATCACCATTATGCAGAACCCACGTCA
ATACAAAATCCCAGATTATTTCTTGAACAGAAAGAAGGATATCAAAGATG
GAAAATACTCTCAAAATATCGCTTTCACGATTCCGTATAATGGCGGAATA
ATTCCTTCCACTTTCTTTTTAGTAGTTGGGTCAATTTTGTACGAAAAAGG
AGCAACCATGTCTCCGTGTCCGTGGTCAACACACAAAAACAACTGGACGT
AAAGGAAGAACTGTTGGTGTATCCAAGAAAAAGAATTAAGTATTGGCTAA
TGGATTGGACAACAAACTTCGTGAGGATCTTGAACGATTGAAGAAAATTC
GTGCCCACAGAGGTTTAAGACATTACTGGGGTCTCTCGTACTTCCCGAAA
AGTTCCAACACATCCTTCGTGTTATGAACACGAATATCGATGGCAAAACC
AAAATTATGTATGCCATGACAAGCATCAAAGGTGTTGGTCGACGTTTCTC
AAATATCTGCTTGAAGAAAGCTGATATTGACATGAACAAGAGAGCTGGAG
AATTATCCGATGAAGAGGTTGAAAGACTCATCACCATTATGCAGAACCCA
CGTCAATACAAAATCCCAGATTATTTCTTGAACAGAAAGAAGGATATCAA
AGATGGAAAATACTCTCAAAATATCGCTTTCACGATTCCGTATAATGGCG
GAATAATTCCTTCCACTTTCTTTTTAGTAGTTGGGTCAATTTTGTACGAA
AAAGGAGCAACCATGTCTCCGTGTCCGTGGTCAACACACAAAAACAACTG
GACGTAAAGGAAGAACTGTTGGTGTATCCAAGAAAAAGAATTAAGTATTG
GCTAATGGATTGGACAACAAACTTCGTGAGGATCTTGAACGATTGAAGAA
AATTCGTGCCCACAGAGGTTTAAGACATTACTGGGGTCTCTCGTACTTCC
CGAAAAGTTCCAACACATCCTTCGTGTTATGAACACGAATATCGATGGCA
AAACCAAAATTATGTATGCCATGACAAGCATCAAAGGTGTTGGTCGACGT
TTCTCAAATATCTGCTTGAAGAAAGCTGATATTGACATGAACAAGAGAGC
TGGAGAATTATCCGATGAAGAGGTTGAAAGACTCATCACCATTATGCAGA
ACCCACGTCAATACAAAATCCCAGATTATTTCTTGAACAGAAAGAAGGAT
ATCAAAGATGGAAAATACTCTCAAAATATCGCTTTCACGATTCCGTATAA
TGGCGGAATAATTCCTTCCACTTTCTTTTTAGTAGTTGGGTCAATTTTGT
ACGAAAAAGGAGCAACCATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038312XLOC_038312Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061029-exon-scaffold_353-1575043694:32713..32810TCONS_00061029-exon-scaffold_353-1575043694:32713..32810Clytia hemisphaericaexon
TCONS_00061029-exon-scaffold_353-1575043694:32256..32543TCONS_00061029-exon-scaffold_353-1575043694:32256..32543Clytia hemisphaericaexon
TCONS_00061029-exon-scaffold_353-1575043694:29139..29230TCONS_00061029-exon-scaffold_353-1575043694:29139..29230Clytia hemisphaericaexon
TCONS_00061029-exon-scaffold_353-1575043694:22744..22967TCONS_00061029-exon-scaffold_353-1575043694:22744..22967Clytia hemisphaericaexon
TCONS_00061029-exon-scaffold_353-1510915933:32713..32810TCONS_00061029-exon-scaffold_353-1510915933:32713..32810Clytia hemisphaericaexon
TCONS_00061029-exon-scaffold_353-1510915933:32256..32543TCONS_00061029-exon-scaffold_353-1510915933:32256..32543Clytia hemisphaericaexon
TCONS_00061029-exon-scaffold_353-1510915933:29139..29230TCONS_00061029-exon-scaffold_353-1510915933:29139..29230Clytia hemisphaericaexon
TCONS_00061029-exon-scaffold_353-1510915933:22744..22967TCONS_00061029-exon-scaffold_353-1510915933:22744..22967Clytia hemisphaericaexon
TCONS_00061029-exon-scaffold_353-1491911889:32713..32810TCONS_00061029-exon-scaffold_353-1491911889:32713..32810Clytia hemisphaericaexon
TCONS_00061029-exon-scaffold_353-1491911889:32256..32543TCONS_00061029-exon-scaffold_353-1491911889:32256..32543Clytia hemisphaericaexon
TCONS_00061029-exon-scaffold_353-1491911889:29139..29230TCONS_00061029-exon-scaffold_353-1491911889:29139..29230Clytia hemisphaericaexon
TCONS_00061029-exon-scaffold_353-1491911889:22744..22967TCONS_00061029-exon-scaffold_353-1491911889:22744..22967Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061029-proteinTCONS_00061029-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_353supercontigscaffold_353:22744..32810 -
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1776.7	1674.88	1963.79	2027.56	1659.34	1277.11	1791.76	1865.89	2336.95	1879.56	2218.06	2914.95	3195.86	3054.06	2868.93	2736.5	2902.51	3207.16	1567.23	1863.9	3332.49	3041.98	2598.19	2464.69	2454.86	2441.83	2794.38	2777.57	2048	2105.38
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR02743730s_Rbsml_prot_S13_C
IPR001892Ribosomal_S13
IPR018269Ribosomal_S13_CS
IPR010979Ribosomal_S13-like_H2TH
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
GO:0003676nucleic acid binding
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
Blast
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BLAST of TCONS_00061029 vs. Swiss-Prot (Human)
Match: RS18 (40S ribosomal protein S18 OS=Homo sapiens GN=RPS18 PE=1 SV=3)

HSP 1 Score: 246.899 bits (629), Expect = 1.657e-82
Identity = 127/152 (83.55%), Postives = 148/152 (97.37%), Query Frame = 3 
Query:   96 MSLVLPEKFQHILRVMNTNIDGKTKIMYAMTSIKGVGRRFSNICLKKADIDMNKRAGELSDEEVERLITIMQNPRQYKIPDYFLNRKKDIKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHYWGLRVRGQHXXXXXXXXXXXXXSKKK 551
            MSLV+PEKFQHILRV+NTNIDG+ KI +A+T+IKGVGRR++++ L+KADID+ KRAGEL+++EVER+ITIMQNPRQYKIPD+FLNR+KD+KDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRH+WGLRVRGQHTKTTGR+GRTVGVSKKK
Sbjct:    1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152
The following BLAST results are available for this feature:
BLAST of TCONS_00061029 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RS181.657e-8283.5540S ribosomal protein S18 OS=Homo sapiens GN=RPS18... [more]
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