|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061035 ID=TCONS_00061035|Name=TCONS_00061035|organism=Clytia hemisphaerica|type=transcript|length=902bp AGGCAAGAAGATATAGATGCAGCGACAACAAGCTGAAAAGTGGAAAAAAG GAAAATCTCAGAAAAAAGTTGGGCGTCCATTTGCATTATCGGAACAAACA GAAAAGTATCTCGCTAGTAGCTTGGTGCAAGAATTGGCAAGATGGCGCTT GCCTTTGGAAACACGAGATTTATCGGGATTGGTCCAGTTTTACGTTCGAC GCCAACGCCTATTGAAATTCAGATTGTGGAAGGCCAGACCTTCAGACAAC TGGGTGAGACGATTTGTTCGGCGCCACAAACTTTCCTTTCGGAAAGCTGA CAAGTTGAAGACCACTAGGGCGTCCGTAACACATGACCAAATTGTAAACT ATTGCAGGAACATAGCAGAAGAGTTATTAGGTGTACCAAACAACTGCATT TTTAACTTTGATGTGACCAATTTTGCCAACAACATTGGGTTATCGTGGTA TGCAGCGAGTAGAGAAAGTTATGAGCACCAGCATACAAAACATATCAGTT ATGTTTTGTGGTGACGCGGATGGCAATTTCCTTCCCCAATGGTAGTATAT AAATCAAAATGTGTTTGGGACAAATGGACGGAAGGCGGTCCTAGAGGTGA AATATGCCATTGCTTATAATAGCTCTTTAACCTTGTCGCTTTTGCATTGT ACTGATAGACAGAAGGTATTACCATTGTGTTGCTCTAATGGCAAGTCTGA CATTCCACCTGTTTGCTCGGAGGTTAGGCAGAATTTCCGGAAATGTAACC CTTTTTTGATGTACTTGGACGGGCCAGGGGCCACTCCACAAGAGGCTGGT TCGAGACCCGGACGTTGGTCCTGCTGCCACACTTACAAAAGTTACCACcc ggaaaaaaagtaaacattggCGACAATCTAGGATGTATTTTTTCAGCTGA GG Run BLAST on NCBI protein sequence of TCONS_00061035-protein >TCONS_00061035-protein ID=TCONS_00061035-protein|Name=TCONS_00061035-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
MQRQQAEKWKKGKSQKKVGRPFALSEQTEKYLASSLVQELARWRLPLETR DLSGLVQFYVRRQRLLKFRLWKARPSDNWVRRFVRRHKLSFRKADKLKTT RASVTHDQIVNYCRNIAEELLGVPNNCIFNFDVTNFANNIGLSWYAASRE SYEHQHTKHISYVLW Run BLAST on NCBI transcript from alignment at scaffold_354:12408..18474+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061035 ID=TCONS_00061035|Name=TCONS_00061035|organism=Clytia hemisphaerica|type=transcript|length=6067bp|location=Sequence derived from alignment at scaffold_354:12408..18474+ (Clytia hemisphaerica) AGGCAAGAAGATATAGATGCAGCGACAACAAGCTGAAAAGTGGAAAAAAG
GTAAGTGGAtcgggtttttacgtttctTTGACATTCTGCTGTCTCAGTGA
CATGGAGAGACTCGTTTAGCAAGTGTAGTATTGAGCAATTTGAAAAAGCT
TAATGTTATTGTGAATGTTATTGCNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcaaaactaaa
aatttcgtaactgagaaaaaataccgcgcaaacatacccttataaagaga
tttctatccacgcatcagattttgagaaactgtttttacgaCTAATAATC
ACTTTACAAAGGGAATCTGAATAGATGATGAAGTAGCCAAAGTGATATAT
TATTCGATCTGATAACAGTTCACTGACCAAACACTGCATGGAAAGTCGTC
TTCTCTAACGCAAGATATAGGACAAAAATGTTAACCtttctctcaatttt
cttgttttgaaatcattgaattttCTTCTGTGCGAAAACAAGTAACAGTG
AATCTTCACTGTCTCTcgaaaagcttaaattttctaaaatcgaaaaaatt
aactttttgttGCACAAAATGATCATATTTTTAGCCACGAAAAGTACCAC
TTTtctctgaaaagaaaatataagaatatttccatgcagtgaagattcac
ttttacttattttcttgtttatggaaatattaaattcaaaatagaGAAAA
GGCGCacctttttttgtgaaaaaattacGAAATCTTTTATATTAAAAGAA
AGattaacaatttattatttacgCATTTTCGAAAAGATGCAGATTTCTaa
accaaaaaaacttttgcttATTGGGAATATATATTCTaggtaaaaaaaaa
tacttgatcCGTCTCATTTCTTaacaacacccctgtgtcacagacccggt
ggacccccaaCCCCgctggaaaaataggccaaaaaatattgtccccggtg
gaaaaaataccctacatttttaaccccactgagaaattgccctatgattc
tatccccattgaaaattgaatagaaaaaattgcactccaaaaccatcccc
actggaatttttgagctggaaacaacagattttctatccccattgggatt
tcgatagaaattttcatccccattgtGGGAAAAGGTttcaccggggcact
gagacaggggtgtttaacaTTGAAACAGTCATAAAACGTCTGgtatggaa
acattaaatttcagGTTACTGTAGCGAAAATATTTCATTCTGAAAGTGAT
TATTTTAAATACGAAGTTTCCATCAACCGACATTGCTGCCATTTAATGAA
ATTAGACGCTAGATTAAATTCGATAAgatattgaatgaaaatattcttgg
atgattttcttctttaaaatttaaGTCAATATATTAAGTAACTTCATTAT
ATATACTCATAATTCTTGTGCTAAAAATCTTATACCTTAAAAAAAGTATA
CCTTATTTACACAAAATGACTTTaattaataaaataatgaattactagcc
ggtacccggcgtcgcacgccggttaagctgtagctgaacgcaataaaagt
cctttggatggagacgaatttttttgtttaagtcaaaagttatcaggaag
agcatcgtttactgtaccagtgtcgtcTGAAACAACTCTGAATATGCCGT
CCAgttgaaatgacaattcttcaggaaaaagtgggaaagtctcaaagaat
agtgcaactttttgtttttatcagattgaaaaaataagataaTTCTaagt
tactttttttaaaacccttgtcataactcttcgaatttaaacatgtaaaa
tgacgtacacactttttgacaGTAGCGActacttgaatgtttttatatga
agaaagagattgactaattttccctttttgctttttatcgcctTTTGAAT
GCTGTCTTTGTTTGGTTTGACaacagtagcggcctggcttaattttcttg
gtNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgtcaatca
aaacaaacttatcgagaacaaaacattgcttgtgaaatcgaaagtgacac
acagacagaaaacaaaatgacatacgcgttatactaataatatatagata
atatctcattttttaaaaaaatgacaaaaattgatgTGGTATAATACGAG
TTTCGGTATAGGGTTAGGGGGGGGctatttctgacaaaatttgacattgt
aaagcattattcgaatttaagaaATGAGAAACTGGGTGTGTAGCGCTCAC
AAAAGCACCACCTTTGTCCATCAGTAATATCAAAAAATGATACTCTGACT
ACGCGATTGTGGGATTTCTAGCGTGAACTATCATTTCTTACATTTAGTTG
TTTAAAAAGACAAGCCTTTGATATACCTTCTATACCCAACGCCCTATTTA
ATAACACGTAAATAAAGTTTACTTTTTTGGTTTCAGGAAAATCTCAGAAA
AAAGTTGGGCGTCCATTTGCATTATCGGAACAAACAGAAAAGTATCTCGC
TAGTAGCTTGGTGCAAGAATTGGCAAGATGGCGCTTGCCTTTGGAAACAC
GAGATTTATCGGGATTGGTCCAGTTTTACGTTCGACGCCAACGCCTATTG
GTAAATACAGTAAACTTTCTTGATGCGAACTGACCATAGTTGAAAGATGT
GAAAGGACTGGTGGTATTTCATATTAGTTTTTGAGGCGCTTGAAACTAGG
GGGTGGCGGGGCTTTTCCTGGATCACTTTTTTTGAATGCattttggcaca
caagatccttgtcatataaggtaacttttcaccaaaaacatttttcaatg
aACGATTTAGGAGAGGGCATTGTCTATTGTTACATAGCTGATTTTTTTAC
TCTTGAATGTAACACTGATATGAAATACGGGAATCTcatatttattaatt
tttacttTATAGAAATTCAGATTGTGGAAGGCCAGACCTTCAGACAACTG
GGTGAGACGATTTGTTCGGCGCCACAAACTTTCCTTTCGGAAAGCTGACA
AGTTGAAGACCACTAGGGCGTCCGTAACACATGACCAAATTGTAAACTAT
TGCAGGAACATAGCAGAAGAGTTATTAGGTAAGACAATTGCTCCTCTTTA
CGGCGACTGTTACATTTAAAGTACcgcatttttatttattcagtctgaaa
ttcttgaaaatacgCACATTCGCTTCTCGATTCATGATTTTATTGCCAAA
GATTCCCTGGTCAttgtagactatgctatagtctaagacgaattcgaaaa
ataaagaataccCTCAAACACGCAAATTAGCAGTCAGGCGAAAATTTTGT
CCGCGCGGGCGAAAAATAGTCGGAGGGGCTCAATgtcgtaaacacagact
cttTTTTTCCGCCATGcgacatattacgttttataatatacaactaTTTA
CAGGTGTACCAAACAACTGCATTTTTAACTTTGATGTGACCAATTTTGCC
AACAACATTGGGTAGGTATATGTTAAaattacgtttttttttttttattt
tgatggcGAAACTGTGCGCAATGGAGGGGTAGCACAAACCTGCGTACAAT
GAATATAGCTAGACCCTAAGTTCGTAATTTTAAACGTTGCCGAAAATTTA
TGTTAATCCACACGAACAGACGTTGTTTCtaaatttgtttgatttcaTGG
GGGTTTTAACACCGAGCTTTATATGGACCCTAGGGAGGCAGTAATTATTT
CGGTCAACTTCTGTCAAGTcttttatcagattttttttgTGTGGTGCTCT
AAGCACCACTGAATACCGGTGTAGATGCAATTTAAGCACTAGGTCAagtt
tttcttgaatatttGTGATGACCTTGCGCCCGTTGACGTTAATTTTCACA
AAGATATTGCTTTTTCTGTGAGTTTGAAATATAACTCACTCACGGTGAAT
CTCGTGCTTAAATATGGGTTAATAACTTGCAGCTTTCTCTTTTATAATGT
AAGGTTATCGTGGTATGCAGCGAGTAGAGAAAGTTATGAGCACCAGCATA
CAAAACATATCAGTTATGTTTTGTGGTGACGCGGATGGCAATTTCCTTCC
CCAATGGTAGTATATAAATCAAAATGTGTTTGGGACAAATGGACGGAAGG
CGGTCCTAGAGGTGAAATATGCCATTGCTTATAATAGCTCTTTAACCTTG
TCGCTTTTGCATTGTACTGATAGACAGAAGGTATTACCATTGTGTTGCTC
TAATGGCAAGTCTGACATTCCACCTGTTTGCTCGGAGGTTAGGCAGAATT
TCCGGAAATGTAACCCTTTTTTGATGTACTTGGACGGGCCAGGGGCCACT
CCACAAGAGGCTGGTTCGAGACCCGGACGTTGGTCCTGCTGCCACACTTA
CAAAAGTTACCACccggaaaaaaagtaaacattggCGACAATCTAGGATG
TATTTTTTCAGCTGAGG Coding sequence (CDS) from alignment at scaffold_354:12408..18474+ >TCONS_00061035 ID=TCONS_00061035|Name=TCONS_00061035|organism=Clytia hemisphaerica|type=CDS|length=2490bp|location=Sequence derived from alignment at scaffold_354:12408..18474+ (Clytia hemisphaerica) ATGCAGCGACAACAAGCTGAAAAGTGGAAAAAAGGAAAATCTCAGAAAAA AGTTGGGCGTCCATTTGCATTATCGGAACAAACAGAAAAGTATCTCGCTA GTAGCTTGGTGCAAGAATTGGCAAGATGGCGCTTGCCTTTGGAAACACGA GATTTATCGGGATTGGTCCAGTTTTACGTTCGACGCCAACGCCTATTGAA ATTCAGATTGTGGAAGGCCAGACCTTCAGACAACTGGGTGAGACGATTTG TTCGGCGCCACAAACTTTCCTTTCGGAAAGCTGACAAGTTGAAGACCACT AGGGCGTCCGTAACACATGACCAAATTGTAAACTATTGCAGGAACATAGC AGAAGAGTTATTAGGTGTACCAAACAACTGCATTTTTAACTTTGATGTGA CCAATTTTGCCAACAACATTGGGTTATCGTGGTATGCAGCGAGTAGAGAA AGTTATGAGCACCAGCATACAAAACATATCAGTTATGTTTTGTGGTGAAT GCAGCGACAACAAGCTGAAAAGTGGAAAAAAGGAAAATCTCAGAAAAAAG TTGGGCGTCCATTTGCATTATCGGAACAAACAGAAAAGTATCTCGCTAGT AGCTTGGTGCAAGAATTGGCAAGATGGCGCTTGCCTTTGGAAACACGAGA TTTATCGGGATTGGTCCAGTTTTACGTTCGACGCCAACGCCTATTGAAAT TCAGATTGTGGAAGGCCAGACCTTCAGACAACTGGGTGAGACGATTTGTT CGGCGCCACAAACTTTCCTTTCGGAAAGCTGACAAGTTGAAGACCACTAG GGCGTCCGTAACACATGACCAAATTGTAAACTATTGCAGGAACATAGCAG AAGAGTTATTAGGTGTACCAAACAACTGCATTTTTAACTTTGATGTGACC AATTTTGCCAACAACATTGGGTTATCGTGGTATGCAGCGAGTAGAGAAAG TTATGAGCACCAGCATACAAAACATATCAGTTATGTTTTGTGGTGAATGC AGCGACAACAAGCTGAAAAGTGGAAAAAAGGAAAATCTCAGAAAAAAGTT GGGCGTCCATTTGCATTATCGGAACAAACAGAAAAGTATCTCGCTAGTAG CTTGGTGCAAGAATTGGCAAGATGGCGCTTGCCTTTGGAAACACGAGATT TATCGGGATTGGTCCAGTTTTACGTTCGACGCCAACGCCTATTGAAATTC AGATTGTGGAAGGCCAGACCTTCAGACAACTGGGTGAGACGATTTGTTCG GCGCCACAAACTTTCCTTTCGGAAAGCTGACAAGTTGAAGACCACTAGGG CGTCCGTAACACATGACCAAATTGTAAACTATTGCAGGAACATAGCAGAA GAGTTATTAGGTGTACCAAACAACTGCATTTTTAACTTTGATGTGACCAA TTTTGCCAACAACATTGGGTTATCGTGGTATGCAGCGAGTAGAGAAAGTT ATGAGCACCAGCATACAAAACATATCAGTTATGTTTTGTGGTGAATGCAG CGACAACAAGCTGAAAAGTGGAAAAAAGGAAAATCTCAGAAAAAAGTTGG GCGTCCATTTGCATTATCGGAACAAACAGAAAAGTATCTCGCTAGTAGCT TGGTGCAAGAATTGGCAAGATGGCGCTTGCCTTTGGAAACACGAGATTTA TCGGGATTGGTCCAGTTTTACGTTCGACGCCAACGCCTATTGAAATTCAG ATTGTGGAAGGCCAGACCTTCAGACAACTGGGTGAGACGATTTGTTCGGC GCCACAAACTTTCCTTTCGGAAAGCTGACAAGTTGAAGACCACTAGGGCG TCCGTAACACATGACCAAATTGTAAACTATTGCAGGAACATAGCAGAAGA GTTATTAGGTGTACCAAACAACTGCATTTTTAACTTTGATGTGACCAATT TTGCCAACAACATTGGGTTATCGTGGTATGCAGCGAGTAGAGAAAGTTAT GAGCACCAGCATACAAAACATATCAGTTATGTTTTGTGGTGAATGCAGCG ACAACAAGCTGAAAAGTGGAAAAAAGGAAAATCTCAGAAAAAAGTTGGGC GTCCATTTGCATTATCGGAACAAACAGAAAAGTATCTCGCTAGTAGCTTG GTGCAAGAATTGGCAAGATGGCGCTTGCCTTTGGAAACACGAGATTTATC GGGATTGGTCCAGTTTTACGTTCGACGCCAACGCCTATTGAAATTCAGAT TGTGGAAGGCCAGACCTTCAGACAACTGGGTGAGACGATTTGTTCGGCGC CACAAACTTTCCTTTCGGAAAGCTGACAAGTTGAAGACCACTAGGGCGTC CGTAACACATGACCAAATTGTAAACTATTGCAGGAACATAGCAGAAGAGT TATTAGGTGTACCAAACAACTGCATTTTTAACTTTGATGTGACCAATTTT GCCAACAACATTGGGTTATCGTGGTATGCAGCGAGTAGAGAAAGTTATGA GCACCAGCATACAAAACATATCAGTTATGTTTTGTGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00061035-exon-scaffold_354-1491911889:12408..12457 | TCONS_00061035-exon-scaffold_354-1491911889:12408..12457 | Clytia hemisphaerica | exon |
TCONS_00061035-exon-scaffold_354-1510915933:12408..12457 | TCONS_00061035-exon-scaffold_354-1510915933:12408..12457 | Clytia hemisphaerica | exon |
TCONS_00061035-exon-scaffold_354-1575043694:12408..12457 | TCONS_00061035-exon-scaffold_354-1575043694:12408..12457 | Clytia hemisphaerica | exon |
TCONS_00061035-exon-scaffold_354-1491911889:16494..16657 | TCONS_00061035-exon-scaffold_354-1491911889:16494..16657 | Clytia hemisphaerica | exon |
TCONS_00061035-exon-scaffold_354-1510915933:16494..16657 | TCONS_00061035-exon-scaffold_354-1510915933:16494..16657 | Clytia hemisphaerica | exon |
TCONS_00061035-exon-scaffold_354-1575043694:16494..16657 | TCONS_00061035-exon-scaffold_354-1575043694:16494..16657 | Clytia hemisphaerica | exon |
TCONS_00061035-exon-scaffold_354-1491911889:16970..17135 | TCONS_00061035-exon-scaffold_354-1491911889:16970..17135 | Clytia hemisphaerica | exon |
TCONS_00061035-exon-scaffold_354-1510915933:16970..17135 | TCONS_00061035-exon-scaffold_354-1510915933:16970..17135 | Clytia hemisphaerica | exon |
TCONS_00061035-exon-scaffold_354-1575043694:16970..17135 | TCONS_00061035-exon-scaffold_354-1575043694:16970..17135 | Clytia hemisphaerica | exon |
TCONS_00061035-exon-scaffold_354-1491911889:17461..17518 | TCONS_00061035-exon-scaffold_354-1491911889:17461..17518 | Clytia hemisphaerica | exon |
TCONS_00061035-exon-scaffold_354-1510915933:17461..17518 | TCONS_00061035-exon-scaffold_354-1510915933:17461..17518 | Clytia hemisphaerica | exon |
TCONS_00061035-exon-scaffold_354-1575043694:17461..17518 | TCONS_00061035-exon-scaffold_354-1575043694:17461..17518 | Clytia hemisphaerica | exon |
TCONS_00061035-exon-scaffold_354-1491911889:18011..18474 | TCONS_00061035-exon-scaffold_354-1491911889:18011..18474 | Clytia hemisphaerica | exon |
TCONS_00061035-exon-scaffold_354-1510915933:18011..18474 | TCONS_00061035-exon-scaffold_354-1510915933:18011..18474 | Clytia hemisphaerica | exon |
TCONS_00061035-exon-scaffold_354-1575043694:18011..18474 | TCONS_00061035-exon-scaffold_354-1575043694:18011..18474 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_354 | supercontig | scaffold_354:12408..18474 + |
Blast
The following BLAST results are available for this feature:
|